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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/python-biopython">Debian Med / python-biopython</a>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/7f24a458d80a9df05291d86d7504dfb124a3db57">7f24a458</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T15:21:40+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
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<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/91a38f13e2e7c0bbbc3dcf2d40d2c00305756add">91a38f13</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T15:21:42+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.85+dfsg</pre>
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<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/3ec14cd6bc58f846448fdf0b4e708dc92e7c7016">3ec14cd6</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T15:21:59+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.85+dfsg'
Update to upstream version '1.85+dfsg'
with Debian dir 9e575f8720c664dd5950d45f4b733de01496ad86</pre>
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<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/42a91392afa6b65ae05ac2d35b2c648a2a6576b0">42a91392</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T15:23:39+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshed patches.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/c8d64ce381b52727947f62603dd3e484d18251d0">c8d64ce3</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T15:36:38+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Added python3-igraph as a recommend package and test dependency for use with Bio.Phylo.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/cef31b679b196cf2fb35cfef72dcf956b5db01bb">cef31b67</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T15:54:53+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: resume running the Tutorial tests everywhere.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-biopython/-/commit/3081a30924c7d6037d5f028c7d9365f293399286">3081a309</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-01-29T16:17:26+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>team upload
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
28 changed files:
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.circleci/config.yml
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.github/workflows/ci.yml
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.pre-commit-config.yaml
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Bio/Align/__init__.py
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Bio/Align/_aligncore.c
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Bio/Align/_pairwisealigner.c
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Bio/Align/bigbed.py
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Bio/Align/interfaces.py
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Bio/Align/sam.py
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Bio/Align/stockholm.py
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Bio/Align/substitution_matrices/__init__.py
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Bio/AlignIO/MafIO.py
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Bio/Blast/NCBIWWW.py
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Bio/Blast/__init__.py
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Bio/Blast/_writers.py
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Bio/Cluster/__init__.py
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Bio/Cluster/cluster.c
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Bio/Cluster/clustermodule.c
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Bio/Nexus/Nodes.py
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Bio/PDB/Atom.py
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Bio/PDB/StructureBuilder.py
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The diff was not included because it is too large.
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