<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Dylan Aïssi pushed to branch master at <a href="https://salsa.debian.org/med-team/plink2">Debian Med / plink2</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/e4ead495444b937871fd2ab9f74533b7b3a113f4">e4ead495</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:39:08+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update string in watch file
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/57775e208990a350853fb0c42af643e2ef2cbd79">57775e20</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:41:06+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.00~a6.9-250129+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/527f655aab9979d41994b1dc14fa45f24e3738b4">527f655a</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:41:09+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.00_a6.9-250129+dfsg'

Update to upstream version '2.00~a6.9-250129+dfsg'
with Debian dir 597c17f5ed24fd5cba81622244883136a846270c</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/01e1d943f8055544a675d8c98d06ea109ed91262">01e1d943</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:41:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update string in watch file
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/a824a08e3f974caa243115eb1fa9d656ade5a8ab">a824a08e</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:42:08+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Bump debian/changelog
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/e098f73600b73311a48a8b2157d308d4698a141e">e098f736</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:48:39+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/plink2/-/commit/9d42768bc398f2550df4664f228c5003c8a3f86e">9d42768b</a></strong>
<div>
<span> by Dylan Aïssi </span> <i> at 2025-02-07T15:56:59+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream changelog
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#38cc88fc0f6f1d13fc1f3ba9501e086f78fd5c7b">
Makefile.src
</a>
</li>
<li class="file-stats">
<a href="#b8806a52914247c7b6ddd3557d8f6dc83c3a1844">
Python/MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#50ad72aa8c85303949a7ebd10d7f9f93cb418022">
Python/README.md
</a>
</li>
<li class="file-stats">
<a href="#ed821e12800ee8f4d589cfebbd0a2e3def2dfc71">
Python/pyproject.toml
</a>
</li>
<li class="file-stats">
<a href="#0c7900fbc4302b2845757e0514ca069c78398ce9">
Python/python_api.txt
</a>
</li>
<li class="file-stats">
<a href="#b43b93cac30179c003057d2e68a314c13d2a399b">
Python/setup.py
</a>
</li>
<li class="file-stats">
<a href="#33ccab169ef5e854db2876edeba1dc5c3c17cc56">
Python/src/pgenlib/pgenlib.pyx
</a>
</li>
<li class="file-stats">
<a href="#86053daaa9b2f224111db4a1d43709afbd40e380">
Python/tests/test_pgenlib.py
</a>
</li>
<li class="file-stats">
<a href="#f26b975d987089576c26f76bc055fc90dcf82442">
<span class="new-file">
+
Tests/TEST_DOSAGE_ROUND_TRIP/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#6bc723445744c87a4f634041734a11c352658302">
<span class="new-file">
+
Tests/TEST_DOSAGE_ROUND_TRIP/run_tests.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#d9957b7b77b64dee4acbed79f724d4bb87904fd8">
<span class="new-file">
+
Tests/TEST_EXTRACT_CHR/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#fc7857957a2dd058e152b13fde33a9ddde66b278">
<span class="new-file">
+
Tests/TEST_EXTRACT_CHR/run_tests.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ffe242fa32e4aff69a7d94a0f5fa3947e745e88">
<span class="new-file">
+
Tests/TEST_EXTRACT_CHR/simulate.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#0477e4af874e705b85ada735a5bf9f75b7850de4">
<span class="new-file">
+
Tests/TEST_MAF_FILTER/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#9629a3c1fb16d5a52b6f4388e56facaa0fbda003">
<span class="new-file">
+
Tests/TEST_MAF_FILTER/run_tests.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#086da766edd9ccb930a69238b8839feebc44c2bc">
<span class="new-file">
+
Tests/TEST_MAF_FILTER/simulate.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#39f3a419600070183bebc0ffa330ed8d6fd99a0c">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#7752e8a7b040a413ff91c61a19926c17828d30ec">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/all_ploidy.pgen
</span>
</a>
</li>
<li class="file-stats">
<a href="#ada1f3fce476c5cda510a0283d2ec4fce34903b4">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/all_ploidy.psam
</span>
</a>
</li>
<li class="file-stats">
<a href="#99fba44056af97d2575b1d0e9ecc64c898f0c29d">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/all_ploidy.pvar.zst
</span>
</a>
</li>
<li class="file-stats">
<a href="#4fa7a9cfce8f5b4d14e45cad753183bcec7320eb">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/plink2_test.phased.phy.want.zst
</span>
</a>
</li>
<li class="file-stats">
<a href="#4dab167cbe394a6fac06f343852fc6997c50336f">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/plink2_test.phy.want.zst
</span>
</a>
</li>
<li class="file-stats">
<a href="#cfe0b55bc01f9ec6745045bbefe2a6401e7ae2db">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/plink2_test.raw.want.zst
</span>
</a>
</li>
<li class="file-stats">
<a href="#8f9b1497d231b7d9297ac8e617d9c4b342efc30c">
<span class="new-file">
+
Tests/TEST_ONE_WAY_EXPORT/run_tests.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#999e93c123f3588f1433c733e3cf235a483aab60">
<span class="new-file">
+
Tests/TEST_PGEN_FREQ/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#b6d5bc7e1ab3fdd67736c6ce25aa02588c0c0fc8">
<span class="new-file">
+
Tests/TEST_PGEN_FREQ/run_tests.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#1aeaeb905f8ce35dd0433a41ec350bc7008efc83">
<span class="new-file">
+
Tests/TEST_PGEN_FREQ/simulate.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#c543bce75221790005e325bdfa3d85bc7d0f32cc">
<span class="new-file">
+
Tests/TEST_PHASED_VCF/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#4bbfd446417459f8f0ac217be5646a4e21ce5cdb">
<span class="new-file">
+
Tests/TEST_PHASED_VCF/1kg_phase3_chr21_start.vcf.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#31aca55ff83bdf610c683e222a25a4b2f24ce283">
<span class="new-file">
+
Tests/TEST_PHASED_VCF/glm_compare.py
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #737278;">

<br>
<a href="https://salsa.debian.org/med-team/plink2/-/compare/cb824780fc361a996ad13b6fdd0607716b65fdf4...9d42768bc398f2550df4664f228c5003c8a3f86e">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>



</p>
</div>
</body>
</html>