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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch master at <a href="https://salsa.debian.org/med-team/bcftools">Debian Med / bcftools</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/d4c70cf9f2fd696d38af10d1594009e453ff9925">d4c70cf9</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-10-14T16:59:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.21</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/8613e0f4957fa5da6a70f1c1c9400254d3731592">8613e0f4</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2024-10-14T16:59:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.21'
Update to upstream version '1.21'
with Debian dir 56b750f4f7d424160e4d3fc416dc6ffc44ab55fe</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/f763a4d9af931a472980f2db655ebc2ebba1f5df">f763a4d9</a></strong>
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<span> by Étienne Mollier </span> <i> at 2025-02-13T21:14:12+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright: update copyright year.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/2abae7d7b445ed68b00b84ea77e1b949ac454950">2abae7d7</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2025-02-13T21:14:40+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>skip_new_test_failing_on_32bit.patch: unfuzz.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/b875def3f4da9fe16fe0840fb02e18cf2c032830">b875def3</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2025-02-13T21:17:38+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>tests-pluginpath.patch: delete: hunk inhibited upstream.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/d2b3e709ed7fc7e02ad6b16136ab7db0aac2ad9c">d2b3e709</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2025-02-13T21:41:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches/*: normalise Last-Update timestamp.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bcftools/-/commit/2965d5e1c211b80697418234df534d6045476294">2965d5e1</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2025-02-13T21:42:39+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: activate hardening.
</pre>
</li>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#ffe48b6682bfba23518b700faea27687cdd61035">
HMM.h
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
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<li class="file-stats">
<a href="#cab3264be7ac8d7f9421a4fc2db77c8dab7789c2">
abuf.c
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<li class="file-stats">
<a href="#43e771a664ca753464c17fc632ecfc6900adea74">
bam2bcf_edlib.c
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<li class="file-stats">
<a href="#55fd211cb88ea0438363e3fdc1174c29ac781f39">
bam2bcf_iaux.c
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<li class="file-stats">
<a href="#641a99f352653ad820a68a93f5671b3ec50e4ef6">
bcftools.h
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<li class="file-stats">
<a href="#b5ff23f6805c7e214151156ce56e18a4ed804010">
consensus.c
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<li class="file-stats">
<a href="#cb9f132eb7ad36b0e293b828436290909d1203e3">
convert.c
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<li class="file-stats">
<a href="#e0008ec0cda6d502580a671cc7660a9d53234e90">
convert.h
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<li class="file-stats">
<a href="#ffca347bb50053be91e2750c17cb4f76fe9ab21c">
csq.c
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</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
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</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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</li>
<li class="file-stats">
<a href="#a6bcfca35e835c1297fe9b2d4cfe4630534f3ea5">
debian/patches/skip_new_test_failing_on_32bit.patch
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</li>
<li class="file-stats">
<a href="#b788ef82e9659c0a0dd0df2a4de49f560c0cc6d3">
<span class="deleted-file">
−
debian/patches/tests-pluginpath.patch
</span>
</a>
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#155bba183d1c525bb29e6a8f0a6f4d5203059fad">
doc/bcftools.1
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<li class="file-stats">
<a href="#10c81da16b14b79039d2fb8ea89464665683576e">
doc/bcftools.html
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<li class="file-stats">
<a href="#9a2b5aa2613ebd6ba3159cd62c01d98d9d354e6a">
doc/bcftools.txt
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<li class="file-stats">
<a href="#812e509851ff5ac944201b4382f8cac531c2eb81">
edlib.h
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</li>
<li class="file-stats">
<a href="#3c41fd34a6f6633d79f03c873c93a1b2fe6e12cd">
filter.c
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<li class="file-stats">
<a href="#84e6c9c4402c828fb5656ef01885adab758a29ca">
filter.h
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<li class="file-stats">
<a href="#57b07d9d9d4be0408a7601113faf3875f4c92f91">
gff.c
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<li class="file-stats">
<a href="#218b1629cda113dedd236d2181c3a1c0e7a61706">
gff.h
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<li class="file-stats">
<a href="#c9658b8851489df9abd6c4fcc77ce4b710868358">
mcall.c
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<li class="file-stats">
<a href="#1dece26b760fbf6cf45c16b644eb681cb509073d">
misc/gff2gff.py
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<a href="#743849d3bc0ef820c17fa7223b7a74b4af94c8c1">
misc/plot-vcfstats
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<li class="file-stats">
<a href="#d1ebbca9682a078e42dd56603975b9b66a897b61">
mpileup.c
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<li class="file-stats">
<a href="#189b30b565bb4d59feac8e0011169847e312dea6">
mpileup_bench/README
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<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
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<a href="https://salsa.debian.org/med-team/bcftools/-/compare/21161956236aa78e389b1aad36fa97d00539530c...2965d5e1c211b80697418234df534d6045476294">View it on GitLab</a>.
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