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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/python-cogent">Debian Med / python-cogent</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/db5d49b73af97cf423c39c17a075822c78ea4ca3">db5d49b7</a></strong>
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<span> by Andreas Tille </span> <i> at 2025-02-15T15:04:42+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2024.12.19a2+dfsg</pre>
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/f2ab90e19a0e018492338dff29704c25a98cd6e6">f2ab90e1</a></strong>
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<span> by Andreas Tille </span> <i> at 2025-02-15T15:04:42+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/9404790e0051b384c5f4ae5792161b3eb234c696">9404790e</a></strong>
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<span> by Andreas Tille </span> <i> at 2025-02-15T15:04:59+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2024.12.19a2+dfsg'
Update to upstream version '2024.12.19a2+dfsg'
with Debian dir 8d0c4e7558e981a56a77bedc412d80b8e983434a</pre>
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-cogent/-/commit/1142ba5ae2b4e27eef63bde743070ab778d090f0">1142ba5a</a></strong>
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<span> by Andreas Tille </span> <i> at 2025-02-15T17:39:56+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono","JetBrains Mono","Menlo","DejaVu Sans Mono","Liberation Mono","Consolas","Ubuntu Mono","Courier New","andale mono","lucida console",monospace; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update patches
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
30 changed files:
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<a href="#693f4e7b076e5a28500ecd05dfc06eb1b7b61ce1">
.github/workflows/linters.yml
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.github/workflows/release.yml
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.github/workflows/testing_develop.yml
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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changelog.md
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debian/changelog
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debian/patches/ignore_tests_accessing_network.patch
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debian/patches/remove-jupyter-sphinx.patch
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debian/patches/skip-parallel-tests-on-single-cpu-systems.patch
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<a href="#df0576cbb783bc50b36e1efa3cbe0564a26c8295">
doc/conf.py
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doc/cookbook/annotation_db.rst
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doc/cookbook/features.rst
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doc/doctest_rsts.py
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doc/examples/demo-mpi-parallel.py
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doc/examples/parallel.rst
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doc/install.rst
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doc/rst2script.py
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noxfile.py
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<a href="#5d07e7d72637aa0d59c89d381fe6dc4cf46e2491">
pyproject.toml
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<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
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src/cogent3/__init__.py
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<a href="#e2d40c6922aab45669a19f787685b949393c32c9">
src/cogent3/_version.py
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src/cogent3/align/align.py
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src/cogent3/align/dp_calculation.py
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<a href="#66c0cddca2670b31fa0c9e66ee3997fd781e7e94">
src/cogent3/align/indel_model.py
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src/cogent3/align/indel_positions.py
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<a href="#df8101e7e91e9c2cb04f52a836717f1662134cdd">
src/cogent3/align/pairwise.py
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<a href="#655beda0be4ef4308e277932a279af57c3e8b798">
src/cogent3/align/pairwise_pogs_numba.py
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<a href="#e780510cc7e53fc09fcf39506977d4959f1a468d">
src/cogent3/align/pairwise_seqs_numba.py
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<a href="#688ae986f425ccd2199f057daf42c33ad399b528">
src/cogent3/align/progressive.py
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The diff was not included because it is too large.
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