<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=US-ASCII" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Aaron M. Ucko pushed to branch upstream at <a href="https://salsa.debian.org/med-team/sra-sdk">Debian Med / sra-sdk</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/c6a3fefad7f327dfc8759be316c5d7f51558d14e">c6a3fefa</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-04-02T21:09:42-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.2.1+dfsg</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
747 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#8aff1fb8da0999d8ee716133633d0de7f173339b">
build/Makefile.env
</a>
</li>
<li class="file-stats">
<a href="#c9512c0b1798e84b5d6a945ad880784dab140a53">
build/Makefile.vers
</a>
</li>
<li class="file-stats">
<a href="#cd955c00d82a1def36f646e10192576271cf214a">
<span class="new-file">
+
build/docker/Dockerfile.build_with_loaders-alpine
</span>
</a>
</li>
<li class="file-stats">
<a href="#1781271ab3cce0bace72226785eefc9b2143f133">
build/docker/Makefile
</a>
</li>
<li class="file-stats">
<a href="#33bef0793f84ec056d0e28f2ca0da4cb2973030c">
<span class="new-file">
+
build/docker/build-and-test-debian-12.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#f5aa8741e30275380fa236444586ca03b6a58fb4">
build/env.cmake
</a>
</li>
<li class="file-stats">
<a href="#2f7454632997703adde95b6c4cb11d707e1b1360">
libs/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#b4e0efa4fcdb69e6ccaa038c3b35bb1df05d3345">
libs/ascp/linux/ascp-path.c
</a>
</li>
<li class="file-stats">
<a href="#4337861b4a675fe6fa269a9cc87b7394d3905411">
libs/general-writer/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#431846c4a542b700764ec36f89e6f0096e2650c0">
libs/general-writer/general-writer.cpp
</a>
</li>
<li class="file-stats">
<a href="#e0dbbc0be5733b107011f61b3c97d813ed4c798e">
libs/general-writer/gw-dumper.cpp
</a>
</li>
<li class="file-stats">
<a href="#1e7a2481a533a9c8cf1263ca347eaea27760ad26">
<span class="new-file">
+
libs/general-writer/test/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#318418fcfa7bbbdd4afb711bc0ff9a0cc3277ecf">
libs/general-writer/test/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#429a3ffd4e2601bb483df6de3abcb4ae22dd0311">
<span class="new-file">
+
libs/general-writer/test/expected/test-general-writer.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#b1bd935059dd18eafd5a0de5271bd46d26157390">
libs/general-writer/test/test-general-writer.cpp
</a>
</li>
<li class="file-stats">
<a href="#8348a2f261de264b85b4b11454a846326b89b0d1">
tools/test-tools/qa-stats/output.hpp
→
libs/inc/JSON_ostream.hpp
</a>
</li>
<li class="file-stats">
<a href="#2463254d81815912b7f1d8c5de59017dfe03aea7">
<span class="new-file">
+
libs/inc/fingerprint.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f2203bfb8833bdd89a1e8f223579dec83cd6a86d">
libs/inc/general-writer/general-writer.h
</a>
</li>
<li class="file-stats">
<a href="#52168114423fb53ae887f89ab260557885f6bae6">
libs/inc/general-writer/general-writer.hpp
</a>
</li>
<li class="file-stats">
<a href="#beda1c2f311690a51b07e6932ca7b9a87fa34ce9">
<span class="new-file">
+
libs/inc/hashing.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f32104fb7fa61649c1f01694f1682c368fa15bdc">
<span class="new-file">
+
libs/inc/kfile_stream/kfile_interface.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#6c0c177f15f09fcef85a39c1b8208534ec1ffcc2">
<span class="new-file">
+
libs/inc/kfile_stream/kfile_stream.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#52d2ddadf6a332b2d62c78d1582b5fead2644b97">
<span class="new-file">
+
libs/inc/schema/transform-functions.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#f92e492faf72d49b8130df9a40e7708411c9d2a1">
<span class="new-file">
+
libs/inc/search/extern.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1f438e73bfe9c03b4a264650c3f1415db16ee566">
<span class="new-file">
+
libs/inc/search/grep.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#38aa5861a76630637a21480f98d340a6d1e40bd7">
<span class="new-file">
+
libs/inc/search/nucstrstr.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1fff744cdeb98c96fd772d525856e619b32326de">
<span class="new-file">
+
libs/inc/search/ref-variation.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#b4da8767488bd7240b7298217969aacdd1a93eee">
tools/loaders/general-loader/test/test-gw-dumper.cpp
→
libs/inc/search/smith-waterman.h
</a>
</li>
<li class="file-stats">
<a href="#01fa8ec47c36dec504be60e1d71817ec69709310">
tools/loaders/bam-loader/spdlog/async.h
→
libs/inc/spdlog/async.h
</a>
</li>
<li class="file-stats">
<a href="#3bd5d55a031ba1c0fbafa07d1a4dbbfbb48eea78">
tools/loaders/bam-loader/spdlog/async_logger-inl.h
→
libs/inc/spdlog/async_logger-inl.h
</a>
</li>
<li class="file-stats">
<a href="#991d1b8c83bb42fb5d6ee63d322cd6511d4366db">
tools/loaders/sharq/spdlog/async_logger.h
→
libs/inc/spdlog/async_logger.h
</a>
</li>
<li class="file-stats">
<a href="#e3f1c939a46d3d1bc9a931891592c9e174569908">
tools/loaders/sharq/spdlog/cfg/argv.h
→
libs/inc/spdlog/cfg/argv.h
</a>
</li>
<li class="file-stats">
<a href="#2d76c7b9a5414295fbc13035853786e49ffaf127">
tools/loaders/sharq/spdlog/cfg/env.h
→
libs/inc/spdlog/cfg/env.h
</a>
</li>
<li class="file-stats">
<a href="#2768ea6241b096fabbadb63b75d9dbf707d0018b">
tools/loaders/sharq/spdlog/cfg/helpers-inl.h
→
libs/inc/spdlog/cfg/helpers-inl.h
</a>
</li>
<li class="file-stats">
<a href="#6e9a20114d2c7a190d65ed59af1aa36e9b1912b6">
tools/loaders/sharq/spdlog/cfg/helpers.h
→
libs/inc/spdlog/cfg/helpers.h
</a>
</li>
<li class="file-stats">
<a href="#1fb54527b3c40633506b963e6f975c2998170ad8">
tools/loaders/bam-loader/spdlog/common-inl.h
→
libs/inc/spdlog/common-inl.h
</a>
</li>
<li class="file-stats">
<a href="#6afaa07e44eb2a8f160361384b8fa3de99d69a56">
tools/loaders/bam-loader/spdlog/common.h
→
libs/inc/spdlog/common.h
</a>
</li>
<li class="file-stats">
<a href="#974e244a0535518736af6bce960448702580cc6d">
tools/loaders/sharq/spdlog/details/backtracer-inl.h
→
libs/inc/spdlog/details/backtracer-inl.h
</a>
</li>
<li class="file-stats">
<a href="#2ecb37e537f065ff3c6de671e2698300e0c28e00">
tools/loaders/sharq/spdlog/details/backtracer.h
→
libs/inc/spdlog/details/backtracer.h
</a>
</li>
<li class="file-stats">
<a href="#ac99571de65153cc513978c013745369a3fe2bcc">
tools/loaders/sharq/spdlog/details/circular_q.h
→
libs/inc/spdlog/details/circular_q.h
</a>
</li>
<li class="file-stats">
<a href="#c3bdc967b8483835f166d61384c62da5cc846af8">
tools/loaders/sharq/spdlog/details/console_globals.h
→
libs/inc/spdlog/details/console_globals.h
</a>
</li>
<li class="file-stats">
<a href="#e74cffd31a95d908803f0859a9f6d034d9fb3891">
tools/loaders/bam-loader/spdlog/details/file_helper-inl.h
→
libs/inc/spdlog/details/file_helper-inl.h
</a>
</li>
<li class="file-stats">
<a href="#64fa175854008f26bb24458b5f5dd20937c71bf4">
tools/loaders/bam-loader/spdlog/details/file_helper.h
→
libs/inc/spdlog/details/file_helper.h
</a>
</li>
<li class="file-stats">
<a href="#13f0673891ed4d1f369fc41b4aa0e85e9fd9965f">
tools/loaders/bam-loader/spdlog/details/fmt_helper.h
→
libs/inc/spdlog/details/fmt_helper.h
</a>
</li>
<li class="file-stats">
<a href="#2de5f2aa679d601163ecd272a0c33cbb6f865b4f">
tools/loaders/sharq/spdlog/details/log_msg-inl.h
→
libs/inc/spdlog/details/log_msg-inl.h
</a>
</li>
<li class="file-stats">
<a href="#e3acc1f9947538e99cff1f14c16cbcb8a9abecd7">
tools/loaders/sharq/spdlog/details/log_msg.h
→
libs/inc/spdlog/details/log_msg.h
</a>
</li>
<li class="file-stats">
<a href="#9e28fddd43f2abdaa8310ac9ad4e74c2b2e91fcb">
tools/loaders/sharq/spdlog/details/log_msg_buffer-inl.h
→
libs/inc/spdlog/details/log_msg_buffer-inl.h
</a>
</li>
<li class="file-stats">
<a href="#10225724b808578225bd1f1ee24e4b340a6a0698">
tools/loaders/sharq/spdlog/details/log_msg_buffer.h
→
libs/inc/spdlog/details/log_msg_buffer.h
</a>
</li>
<li class="file-stats">
<a href="#013e58be3987ffe902a0ab3142f18d823775fbe7">
tools/loaders/bam-loader/spdlog/details/mpmc_blocking_q.h
→
libs/inc/spdlog/details/mpmc_blocking_q.h
</a>
</li>
<li class="file-stats">
<a href="#7d4468d664a6329644a9f7121b7d33f39a4f6c4c">
tools/loaders/bam-loader/spdlog/details/null_mutex.h
→
libs/inc/spdlog/details/null_mutex.h
</a>
</li>
<li class="file-stats">
<a href="#3395921e78e1c76fecabe8c77cc4346a51623eaa">
tools/loaders/bam-loader/spdlog/details/os-inl.h
→
libs/inc/spdlog/details/os-inl.h
</a>
</li>
<li class="file-stats">
<a href="#ccb0e22e262c867e133f0710874e4155c5c52797">
tools/loaders/bam-loader/spdlog/details/os.h
→
libs/inc/spdlog/details/os.h
</a>
</li>
<li class="file-stats">
<a href="#4447eb41376eac19b9186c09f38f98a1e20a7aec">
tools/loaders/sharq/spdlog/details/periodic_worker-inl.h
→
libs/inc/spdlog/details/periodic_worker-inl.h
</a>
</li>
<li class="file-stats">
<a href="#1d0fce8317e3ca60ccf7ab85a06e9e2d7e365b15">
tools/loaders/sharq/spdlog/details/periodic_worker.h
→
libs/inc/spdlog/details/periodic_worker.h
</a>
</li>
<li class="file-stats">
<a href="#27cc700a8858e552131a0fe38c1d34564d3849f2">
tools/loaders/sharq/spdlog/details/registry-inl.h
→
libs/inc/spdlog/details/registry-inl.h
</a>
</li>
<li class="file-stats">
<a href="#668ca0cc6e32c04e27908175dc37d5eba18b389e">
tools/loaders/bam-loader/spdlog/details/registry.h
→
libs/inc/spdlog/details/registry.h
</a>
</li>
<li class="file-stats">
<a href="#48831beea58b927af7d99640b886ba471b29f568">
tools/loaders/sharq/spdlog/details/synchronous_factory.h
→
libs/inc/spdlog/details/synchronous_factory.h
</a>
</li>
<li class="file-stats">
<a href="#60064d2f67422192d9c89b63bc383d04d02a47b0">
tools/loaders/bam-loader/spdlog/details/tcp_client-windows.h
→
libs/inc/spdlog/details/tcp_client-windows.h
</a>
</li>
<li class="file-stats">
<a href="#4d062766201292c553bbd15da1126ba04f9fa603">
tools/loaders/bam-loader/spdlog/details/tcp_client.h
→
libs/inc/spdlog/details/tcp_client.h
</a>
</li>
<li class="file-stats">
<a href="#36867649afb7480dd79718b18d794ca47a1d6d41">
tools/loaders/bam-loader/spdlog/details/thread_pool-inl.h
→
libs/inc/spdlog/details/thread_pool-inl.h
</a>
</li>
<li class="file-stats">
<a href="#0aa009d9fa345b8ee3ace27ec4c7a97733cba869">
tools/loaders/bam-loader/spdlog/details/thread_pool.h
→
libs/inc/spdlog/details/thread_pool.h
</a>
</li>
<li class="file-stats">
<a href="#8cba92756a1135855b970e689f281d994940ea8f">
tools/loaders/bam-loader/spdlog/details/udp_client-windows.h
→
libs/inc/spdlog/details/udp_client-windows.h
</a>
</li>
<li class="file-stats">
<a href="#83b0dfc05c20964768290e67ac4770ee4bfadca2">
tools/loaders/bam-loader/spdlog/details/udp_client.h
→
libs/inc/spdlog/details/udp_client.h
</a>
</li>
<li class="file-stats">
<a href="#6d898a62093a7d3354b4f1de3362d9eb5b2f3710">
tools/loaders/sharq/spdlog/details/windows_include.h
→
libs/inc/spdlog/details/windows_include.h
</a>
</li>
<li class="file-stats">
<a href="#dc48a7b4b1e55d366d6577777a97f9c0422023a7">
tools/loaders/bam-loader/spdlog/fmt/bin_to_hex.h
→
libs/inc/spdlog/fmt/bin_to_hex.h
</a>
</li>
<li class="file-stats">
<a href="#36cb59430d8092cad59525798247bad60f003d15">
tools/loaders/sharq/spdlog/fmt/bundled/args.h
→
libs/inc/spdlog/fmt/bundled/args.h
</a>
</li>
<li class="file-stats">
<a href="#448d5db1d2adcd082267147bb653c429ca554181">
tools/loaders/bam-loader/spdlog/fmt/bundled/chrono.h
→
libs/inc/spdlog/fmt/bundled/chrono.h
</a>
</li>
<li class="file-stats">
<a href="#224d4a7a799d5ce3bec8b9559699f762f9ecf454">
tools/loaders/bam-loader/spdlog/fmt/bundled/color.h
→
libs/inc/spdlog/fmt/bundled/color.h
</a>
</li>
<li class="file-stats">
<a href="#104437928d2ece208d3643da4231e8aa20f85dc8">
tools/loaders/sharq/spdlog/fmt/bundled/compile.h
→
libs/inc/spdlog/fmt/bundled/compile.h
</a>
</li>
<li class="file-stats">
<a href="#860ac3f05bb875c02c15096e12b30e51cac4b813">
tools/loaders/sharq/spdlog/fmt/bundled/core.h
→
libs/inc/spdlog/fmt/bundled/core.h
</a>
</li>
<li class="file-stats">
<a href="#dcb8aaceed6334c0c276ffedea7ad544e8357c9f">
tools/loaders/bam-loader/spdlog/fmt/bundled/fmt.license.rst
→
libs/inc/spdlog/fmt/bundled/fmt.license.rst
</a>
</li>
<li class="file-stats">
<a href="#4c067cd57b4b92b1ae6ef9e54981e0685fd47eb1">
tools/loaders/sharq/spdlog/fmt/bundled/format-inl.h
→
libs/inc/spdlog/fmt/bundled/format-inl.h
</a>
</li>
<li class="file-stats">
<a href="#9df7a2ca62f7e93bb27f4b2b7a9c9478c87cdddb">
tools/loaders/bam-loader/spdlog/fmt/bundled/format.h
→
libs/inc/spdlog/fmt/bundled/format.h
</a>
</li>
<li class="file-stats">
<a href="#8dd73c1b82e105aa5593ff1e4d84bc973f60c819">
tools/loaders/sharq/spdlog/fmt/bundled/locale.h
→
libs/inc/spdlog/fmt/bundled/locale.h
</a>
</li>
<li class="file-stats">
<a href="#3ff955408846a8a7c07c8abb3ed9d5dedaed7563">
tools/loaders/bam-loader/spdlog/fmt/bundled/os.h
→
libs/inc/spdlog/fmt/bundled/os.h
</a>
</li>
<li class="file-stats">
<a href="#c238a5b3fb9de325b498b4f21906e594c90eb7ba">
<span class="new-file">
+
libs/inc/spdlog/fmt/bundled/ostream.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#57d494d0f9a9c5ef7ec20316b9a0b8935b8f97de">
tools/loaders/bam-loader/spdlog/fmt/bundled/printf.h
→
libs/inc/spdlog/fmt/bundled/printf.h
</a>
</li>
<li class="file-stats">
<a href="#75902ba1c57c81abc346cced401a2e2ba5a9d1a7">
tools/loaders/sharq/spdlog/fmt/bundled/ranges.h
→
libs/inc/spdlog/fmt/bundled/ranges.h
</a>
</li>
<li class="file-stats">
<a href="#fed9052053217a8f08d01527a2475ad31e8233f5">
<span class="new-file">
+
libs/inc/spdlog/fmt/bundled/std.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#2a7dbcdc91608387298548f903016e3b055edfa8">
tools/loaders/bam-loader/spdlog/fmt/bundled/xchar.h
→
libs/inc/spdlog/fmt/bundled/xchar.h
</a>
</li>
<li class="file-stats">
<a href="#826d6d2e011674495a5e658d8148e64c29fe59ac">
tools/loaders/bam-loader/spdlog/fmt/chrono.h
→
libs/inc/spdlog/fmt/chrono.h
</a>
</li>
<li class="file-stats">
<a href="#d733c9a01c2b336832399cc3e5e4f198646ba9c8">
tools/loaders/bam-loader/spdlog/fmt/compile.h
→
libs/inc/spdlog/fmt/compile.h
</a>
</li>
<li class="file-stats">
<a href="#97bbf4c7e688296da3f93f7cccfe0e3805d070bb">
tools/loaders/bam-loader/spdlog/fmt/fmt.h
→
libs/inc/spdlog/fmt/fmt.h
</a>
</li>
<li class="file-stats">
<a href="#098d33ae93d3bfcc0d968e6e5fec596824f9bc65">
tools/loaders/bam-loader/spdlog/fmt/ostr.h
→
libs/inc/spdlog/fmt/ostr.h
</a>
</li>
<li class="file-stats">
<a href="#2636083ff690ffa705ff3b1a9fa8b04313fa3c07">
tools/loaders/sharq/spdlog/fmt/ostr.h
→
libs/inc/spdlog/fmt/ranges.h
</a>
</li>
<li class="file-stats">
<a href="#64811330c89d7ccd636787cf2fb7812d2699da61">
<span class="new-file">
+
libs/inc/spdlog/fmt/std.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1be010024bd9864f8b8c9f29b1c01e0a5d2122d8">
tools/loaders/bam-loader/spdlog/fmt/xchar.h
→
libs/inc/spdlog/fmt/xchar.h
</a>
</li>
<li class="file-stats">
<a href="#cbb5eb75563db429f45507979ed0394a863b34cb">
tools/loaders/sharq/spdlog/formatter.h
→
libs/inc/spdlog/formatter.h
</a>
</li>
<li class="file-stats">
<a href="#9713b815d37eecb4264ee3e9cead5425b738b225">
tools/loaders/bam-loader/spdlog/fwd.h
→
libs/inc/spdlog/fwd.h
</a>
</li>
<li class="file-stats">
<a href="#e46e30344a568c55427235b25520e6399f989c88">
tools/loaders/bam-loader/spdlog/logger-inl.h
→
libs/inc/spdlog/logger-inl.h
</a>
</li>
<li class="file-stats">
<a href="#67e1ba4140a91a443ee3b85f3230bbe5b5827a44">
tools/loaders/bam-loader/spdlog/logger.h
→
libs/inc/spdlog/logger.h
</a>
</li>
<li class="file-stats">
<a href="#b12ecdcc360c926797722d88f77d7bfe576c5dcd">
tools/loaders/bam-loader/spdlog/pattern_formatter-inl.h
→
libs/inc/spdlog/pattern_formatter-inl.h
</a>
</li>
<li class="file-stats">
<a href="#000aafb67bcef0e53a1e205a84a8060edcd15c30">
tools/loaders/sharq/spdlog/pattern_formatter.h
→
libs/inc/spdlog/pattern_formatter.h
</a>
</li>
<li class="file-stats">
<a href="#38b9762504439cc3437f9b8833f1a229af875c19">
tools/loaders/sharq/spdlog/sinks/android_sink.h
→
libs/inc/spdlog/sinks/android_sink.h
</a>
</li>
<li class="file-stats">
<a href="#e1efb3dd4658df5e8a7fc38e8f17a2b779bcc4df">
tools/loaders/sharq/spdlog/sinks/ansicolor_sink-inl.h
→
libs/inc/spdlog/sinks/ansicolor_sink-inl.h
</a>
</li>
<li class="file-stats">
<a href="#572708f8f619afab101fdd8decb42783a5115a92">
tools/loaders/sharq/spdlog/sinks/ansicolor_sink.h
→
libs/inc/spdlog/sinks/ansicolor_sink.h
</a>
</li>
<li class="file-stats">
<a href="#323ad238a94432c356dd4a3cdab1cd9a7adaff74">
tools/loaders/sharq/spdlog/sinks/base_sink-inl.h
→
libs/inc/spdlog/sinks/base_sink-inl.h
</a>
</li>
<li class="file-stats">
<a href="#4b74fc795e965bf762f7b6e5b490abb5ee2db58b">
tools/loaders/bam-loader/spdlog/sinks/base_sink.h
→
libs/inc/spdlog/sinks/base_sink.h
</a>
</li>
<li class="file-stats">
<a href="#b65914c249fc21abb3cbafecf900acf748650524">
tools/loaders/bam-loader/spdlog/sinks/basic_file_sink-inl.h
→
libs/inc/spdlog/sinks/basic_file_sink-inl.h
</a>
</li>
<li class="file-stats">
<a href="#494fb190ae95b2d2bb008a801ce5c3ddcc4ccddf">
tools/loaders/bam-loader/spdlog/sinks/basic_file_sink.h
→
libs/inc/spdlog/sinks/basic_file_sink.h
</a>
</li>
<li class="file-stats">
<a href="#e76bce0a78ba352855fca727ba1b29f8c9222e43">
tools/loaders/sharq/spdlog/sinks/basic_file_sink.h
→
libs/inc/spdlog/sinks/callback_sink.h
</a>
</li>
<li class="file-stats">
<a href="#1ccb455f5d2496866f5a8d5adb7130ec087b40ee">
tools/loaders/bam-loader/spdlog/sinks/daily_file_sink.h
→
libs/inc/spdlog/sinks/daily_file_sink.h
</a>
</li>
<li class="file-stats">
<a href="#d0c79c92a59b7960d68ed39e941358ad2d6ba546">
tools/loaders/sharq/spdlog/sinks/dist_sink.h
→
libs/inc/spdlog/sinks/dist_sink.h
</a>
</li>
<li class="file-stats">
<a href="#0bc374ec463b2842df3b266cb1a6c6c2da25a363">
tools/loaders/bam-loader/spdlog/sinks/dup_filter_sink.h
→
libs/inc/spdlog/sinks/dup_filter_sink.h
</a>
</li>
<li class="file-stats">
<a href="#80857dca7a1a77f5fc3953aa2744ebdb79ed2443">
tools/loaders/bam-loader/spdlog/sinks/hourly_file_sink.h
→
libs/inc/spdlog/sinks/hourly_file_sink.h
</a>
</li>
<li class="file-stats">
<a href="#01a26b472fabbfcb043c595c470fd6d5ba08b02d">
<span class="new-file">
+
libs/inc/spdlog/sinks/kafka_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#fef9d4448fcf3d8c7f7989ee7c7148fd1c854eeb">
tools/loaders/bam-loader/spdlog/sinks/mongo_sink.h
→
libs/inc/spdlog/sinks/mongo_sink.h
</a>
</li>
<li class="file-stats">
<a href="#4371e7751cfe35363c0ef3608e1ceedc738531b5">
tools/loaders/bam-loader/spdlog/sinks/msvc_sink.h
→
libs/inc/spdlog/sinks/msvc_sink.h
</a>
</li>
<li class="file-stats">
<a href="#500ee4ef67bb64d8fc1470173eac0ecc2ea36040">
tools/loaders/sharq/spdlog/sinks/null_sink.h
→
libs/inc/spdlog/sinks/null_sink.h
</a>
</li>
<li class="file-stats">
<a href="#22bd63edd300313529c5c1e4cb73dea790ac52cb">
tools/loaders/sharq/spdlog/sinks/ostream_sink.h
→
libs/inc/spdlog/sinks/ostream_sink.h
</a>
</li>
<li class="file-stats">
<a href="#c4c820fa3d442d73d397a89f1b01e637a013e980">
tools/loaders/bam-loader/spdlog/sinks/qt_sinks.h
→
libs/inc/spdlog/sinks/qt_sinks.h
</a>
</li>
<li class="file-stats">
<a href="#d62d1e4386d87d0736c7dbcee2fd296e7df33456">
tools/loaders/sharq/spdlog/sinks/ringbuffer_sink.h
→
libs/inc/spdlog/sinks/ringbuffer_sink.h
</a>
</li>
<li class="file-stats">
<a href="#c30e3d8f7190ac7e6de62f67de060a6e408bfba9">
tools/loaders/bam-loader/spdlog/sinks/rotating_file_sink-inl.h
→
libs/inc/spdlog/sinks/rotating_file_sink-inl.h
</a>
</li>
<li class="file-stats">
<a href="#12b1db44b8e5bbbbe3fb5345e2ff6ba3fc938f1b">
tools/loaders/bam-loader/spdlog/sinks/rotating_file_sink.h
→
libs/inc/spdlog/sinks/rotating_file_sink.h
</a>
</li>
<li class="file-stats">
<a href="#17d40e1a092f4a5c8b51f066041d0e44f64e1980">
tools/loaders/sharq/spdlog/sinks/sink-inl.h
→
libs/inc/spdlog/sinks/sink-inl.h
</a>
</li>
<li class="file-stats">
<a href="#eb0520ac3878f8362a63698375751ff7919f5da7">
tools/loaders/sharq/spdlog/sinks/sink.h
→
libs/inc/spdlog/sinks/sink.h
</a>
</li>
<li class="file-stats">
<a href="#1767d99241de69c9876e7a0c5064a5a8466abf31">
tools/loaders/sharq/spdlog/sinks/stdout_color_sinks-inl.h
→
libs/inc/spdlog/sinks/stdout_color_sinks-inl.h
</a>
</li>
<li class="file-stats">
<a href="#bbb1c0a2ab7bc17dee2ea0d1124ddd62621b727a">
tools/loaders/sharq/spdlog/sinks/stdout_color_sinks.h
→
libs/inc/spdlog/sinks/stdout_color_sinks.h
</a>
</li>
<li class="file-stats">
<a href="#6bb0c570b3f85e36db2e696cb495a0f7f24b8642">
tools/loaders/bam-loader/spdlog/sinks/stdout_sinks-inl.h
→
libs/inc/spdlog/sinks/stdout_sinks-inl.h
</a>
</li>
<li class="file-stats">
<a href="#5c5974b687b7addb309fdf09b2ba737af091551e">
tools/loaders/sharq/spdlog/sinks/stdout_sinks.h
→
libs/inc/spdlog/sinks/stdout_sinks.h
</a>
</li>
<li class="file-stats">
<a href="#a9809d6bdb4d3288f2d5c40ef0bb29c28d062de9">
tools/loaders/sharq/spdlog/sinks/syslog_sink.h
→
libs/inc/spdlog/sinks/syslog_sink.h
</a>
</li>
<li class="file-stats">
<a href="#abfe96d65249a7d56cf0cdd2ae85fd707e9a5199">
tools/loaders/sharq/spdlog/sinks/systemd_sink.h
→
libs/inc/spdlog/sinks/systemd_sink.h
</a>
</li>
<li class="file-stats">
<a href="#662745eb32d0ef635a93499cff6fd7387bf95789">
tools/loaders/sharq/spdlog/sinks/tcp_sink.h
→
libs/inc/spdlog/sinks/tcp_sink.h
</a>
</li>
<li class="file-stats">
<a href="#0233f3443d819ec5abc49a1a354a02fa53f3320d">
tools/loaders/bam-loader/spdlog/sinks/udp_sink.h
→
libs/inc/spdlog/sinks/udp_sink.h
</a>
</li>
<li class="file-stats">
<a href="#7c29b9093e414bc356cb18545778b4e774bcc459">
tools/loaders/bam-loader/spdlog/sinks/win_eventlog_sink.h
→
libs/inc/spdlog/sinks/win_eventlog_sink.h
</a>
</li>
<li class="file-stats">
<a href="#337828db9fd6e3a824c146288db9d4c2728a79a2">
tools/loaders/sharq/spdlog/sinks/wincolor_sink-inl.h
→
libs/inc/spdlog/sinks/wincolor_sink-inl.h
</a>
</li>
<li class="file-stats">
<a href="#1f3fd3acfff5a72ca0a6172b496221adbec857c4">
tools/loaders/sharq/spdlog/sinks/wincolor_sink.h
→
libs/inc/spdlog/sinks/wincolor_sink.h
</a>
</li>
<li class="file-stats">
<a href="#aeaa5f29e84dd47ca1c4010fdd65750d1d523910">
tools/loaders/bam-loader/spdlog/spdlog-inl.h
→
libs/inc/spdlog/spdlog-inl.h
</a>
</li>
<li class="file-stats">
<a href="#666c135bba92cc6950397c15b30471a7d8626c21">
tools/loaders/bam-loader/spdlog/spdlog.h
→
libs/inc/spdlog/spdlog.h
</a>
</li>
<li class="file-stats">
<a href="#548f7955dc32045f0171eecd3b8cfffe51a8f34a">
tools/loaders/bam-loader/spdlog/stopwatch.h
→
libs/inc/spdlog/stopwatch.h
</a>
</li>
<li class="file-stats">
<a href="#e5e9b7c1cc79ab99ac0a47a9aa3fc6d2f99be644">
tools/loaders/bam-loader/spdlog/tweakme.h
→
libs/inc/spdlog/tweakme.h
</a>
</li>
<li class="file-stats">
<a href="#6dfaa9c89890e6ce902022a6231bf7fc496c35d8">
tools/loaders/bam-loader/spdlog/version.h
→
libs/inc/spdlog/version.h
</a>
</li>
<li class="file-stats">
<a href="#657f051be27cb212de43e00592cd8efe23e7ecaa">
<span class="new-file">
+
libs/inc/update-spdlog.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#348f9568ecf267fbb6afc3a51851cde4efa0ff22">
libs/inc/vdb.hpp
</a>
</li>
<li class="file-stats">
<a href="#4cf1f7c5b4345b02f5d995833ba534304b8ef04a">
<span class="new-file">
+
libs/schema/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#dad73c136720f2773b24dba6fb0898364f666a9b">
<span class="new-file">
+
libs/schema/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#b0087304dc5db703f4f780a4f4a9351d9edf6b33">
<span class="new-file">
+
libs/schema/SraSchema.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#2c77decd47b18b513586a4fe8c8a363a0a057357">
<span class="new-file">
+
libs/schema/align/align.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#777ae1d6e224c59740d87e6d4d0a5c3528859373">
<span class="new-file">
+
libs/schema/align/mate-cache.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#f3e1693e2d199b1f3e8f4932f5a4410e15aca7f8">
<span class="new-file">
+
libs/schema/align/pileup-stats.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#69b92b96e999c444d143141976ae709344ae0ed7">
<span class="new-file">
+
libs/schema/align/qstat.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#da20ec47002be7de085e246443f5a7c229632435">
<span class="new-file">
+
libs/schema/align/refseq.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#faf5291af35c93a443a4c525325c2e9c14a32d26">
<span class="new-file">
+
libs/schema/align/seq.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#83d64f5415e639e2d2d1f5216f37fe4e01974fc9">
<span class="new-file">
+
libs/schema/insdc/insdc.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#89edeee5a32c4db254111232b6db0a543b3e936b">
<span class="new-file">
+
libs/schema/insdc/seq.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#b43570de677a781bb3e37214df0ea496bd79a042">
<span class="new-file">
+
libs/schema/insdc/sra.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#fa459600223e0c98e6b42822a2c0692627590079">
<span class="new-file">
+
libs/schema/ncbi/clip.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#105f665cde7f9f8a641599b8a48a8d01fd788ef0">
<span class="new-file">
+
libs/schema/ncbi/ncbi.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#82392f844867115b89754fa0c86952a247a45803">
<span class="new-file">
+
libs/schema/ncbi/pnbrdb.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#15d3df3ae9b2d3d9329943926e2b6cefeb3d0901">
<span class="new-file">
+
libs/schema/ncbi/seq-graph.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#59a390e5a569c33750e1574a671b36580a5a16b9">
<span class="new-file">
+
libs/schema/ncbi/seq.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#20bebf15c55663245e6366e9d4573220ac638b39">
<span class="new-file">
+
libs/schema/ncbi/spotname.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5027b058b4abf1088282ff73db2e5ccbbe1418b">
<span class="new-file">
+
libs/schema/ncbi/sra.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#c752770d030b913d2fb55fa20215ce12e393e04b">
<span class="new-file">
+
libs/schema/ncbi/stats.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#e460547240cb667677d3dcdf9f1405986a85b4ef">
<span class="new-file">
+
libs/schema/ncbi/trace.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#40823cd7504d4922fde8b9a70024442e9dbc00f0">
<span class="new-file">
+
libs/schema/ncbi/varloc.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#60ed12bf5ed84de66cde999c6194e65d284b3651">
<span class="new-file">
+
libs/schema/ncbi/wgs-contig.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#6bb4824f2f8a35d34847ab16f6308124fd2a1606">
<span class="new-file">
+
libs/schema/sra/454.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#13744e3f274a6636f51017bcf7fd0d70f3a77d94">
<span class="new-file">
+
libs/schema/sra/abi.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#14e88f2f9422f7887e552f06a9e73853d45e4d92">
<span class="new-file">
+
libs/schema/sra/generic-fastq.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#487e1d7a805a140e2d44e4199431b8816e93a267">
<span class="new-file">
+
libs/schema/sra/helicos.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#d1246341546d469abed4348464576c6c2e6c0ebf">
<span class="new-file">
+
libs/schema/sra/illumina.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#6d01d241fd10f2a9887dc26e9c1430c22d320d27">
<span class="new-file">
+
libs/schema/sra/ion-torrent.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#63b9c5be267e314069d1a7ebe385563c579ba193">
<span class="new-file">
+
libs/schema/sra/nanopore.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#30a7693bc7be8067de3e3ace4c1b2a12db5b5fff">
<span class="new-file">
+
libs/schema/sra/pacbio.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#3571ae77a208113adcacb3342d3d89c38a8e33a4">
<span class="new-file">
+
libs/schema/sra/pevents.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#e5bd5b9591e251309b16f796dcaca2c92ae000cb">
<span class="new-file">
+
libs/schema/sraxf/dynamic-454-read-descriptor.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#191983ab38c65e979b5ef1bc143013c3d66dacd2">
<span class="new-file">
+
libs/search/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#308685f3e72729c7f5f6118697b3ae299eaf3626">
<span class="new-file">
+
libs/search/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#a6e97ea1aac26d48bb4180edf69d3e9f21e6ea10">
<span class="new-file">
+
libs/search/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#53c498753503a1461def4e84b41ed2814bc0f75f">
<span class="new-file">
+
libs/search/agrep-dp.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#32f67a677aa1338f5e09da08e4e5f2ce1ae42c34">
<span class="new-file">
+
libs/search/agrep-myers.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#9be1414b23e4ac74dcf1d31168bcdebc40dccfeb">
<span class="new-file">
+
libs/search/agrep-myersunltd.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#5510a121b7343cf6c1abe050f9a36f2325e44365">
<span class="new-file">
+
libs/search/agrep-wumanber.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#4ef6fcd2b2748949164f03c1d9f987d5a7f1b7bd">
<span class="new-file">
+
libs/search/debug.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#5b0303ea070555c6315430a6bf423d96faa82f1a">
<span class="new-file">
+
libs/search/fgrep-aho.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#fbfd5263265635e49ddde722b01bc43c1779d666">
<span class="new-file">
+
libs/search/fgrep-boyermoore.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#178c1f030494c912b313e9cc9d973596b8d42794">
<span class="new-file">
+
libs/search/fgrep-dumb.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#14d86067001b696e17ec0b54ae98daaf4c609e80">
<span class="new-file">
+
libs/search/nucstrstr.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#e801e33f5f74169d85458a19f3ce5930b79506ae">
<span class="new-file">
+
libs/search/search-priv.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c408f774534638b47c1385e9f2e9874e807c633">
<span class="new-file">
+
libs/search/search.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3fb8c6c59c8e8bf3e2789d0a62f0a37ba1e574b">
<span class="new-file">
+
libs/search/sw-search.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#adc389bf797ae0f85a45fc53e3d0f748622af1d3">
ngs/CHANGES.md
</a>
</li>
<li class="file-stats">
<a href="#63f79ceedbd5559183ecaf771e555cd98d9f08ca">
ngs/ncbi/ngs-c++/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#b5d1030c8c4115992b319dfa316c9502d9c72bfd">
ngs/ncbi/ngs-jni/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#c3cf7b856a20c54b90c108c1f216abde804c303f">
ngs/ncbi/ngs/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#dd69274a949e5ca9cf865fa97dee0018b1a9d3db">
ngs/ncbi/ngs/NGS_FragmentBlob.c
</a>
</li>
<li class="file-stats">
<a href="#38783ec37c6e86c3a56459de7ba76d9275d8d809">
ngs/ncbi/ngs/NGS_ReferenceBlob.c
</a>
</li>
<li class="file-stats">
<a href="#34534a116e76e87cd59be5e5ee5bfbcd4c603e26">
ngs/ncbi/ngs/VByteBlob.c
</a>
</li>
<li class="file-stats">
<a href="#b5c66c62c07c9f95821dfc1ebc49cb930127a553">
ngs/ngs-bam/Makefile.vers
</a>
</li>
<li class="file-stats">
<a href="#4452ffc1666dc5cbe59f6cf41b274f85540c9f35">
ngs/ngs-java/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#53cca74a60e7f90122c3297cd023f28e7d3c1eb5">
ngs/ngs-java/Makefile.vers
</a>
</li>
<li class="file-stats">
<a href="#a1a03b2c7069d1697ded4d6bfa25a712a22a7780">
ngs/ngs-java/examples/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#d3e841b0ff9236d60f175d87534b7b076cd734ce">
ngs/ngs-java/gov/nih/nlm/ncbi/ngs/LibDependencies.java
</a>
</li>
<li class="file-stats">
<a href="#2cee05121006964246033a3646f45c2a7c646ca5">
ngs/ngs-java/gov/nih/nlm/ncbi/ngs/Makefile
</a>
</li>
<li class="file-stats">
<a href="#4e31582c889982cac583982ef120d9b9289ca8fb">
ngs/ngs-python/Makefile.vers
</a>
</li>
<li class="file-stats">
<a href="#4f738d7beeeeed6e421d88cef118120b97efb8e1">
ngs/ngs-python/examples/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#2afffc4ce43763096a150509c292219b53ea0d81">
ngs/ngs-sdk/Makefile.vers
</a>
</li>
<li class="file-stats">
<a href="#1a26f87f2bdbe8c29e06a8de6fd379f228f8a6f5">
ngs/ngs-sdk/dispatch/version.h
</a>
</li>
<li class="file-stats">
<a href="#d0f127ba09776fafb240aed0bfc89f382f917f91">
ngs/ngs-sdk/examples/run_and_diff.sh
</a>
</li>
<li class="file-stats">
<a href="#ce64b048876754a43398b3d7fe57bd5727c370c2">
<span class="new-file">
+
shared/python/GeneralWriter.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#40f41b8acb1c7dccd6115a82b53e7fa90f0fe8c2">
<span class="new-file">
+
shared/python/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#4705a68e02a22c6bfea0273af010dd42e1861b4a">
shared/toolkit.vers
</a>
</li>
<li class="file-stats">
<a href="#5cd76f234790117309267153be422c6d4e826541">
shared/toolkit.vers.h
</a>
</li>
<li class="file-stats">
<a href="#d9577b84b013e0c4f6dcf8189bbe83b18f2948db">
test/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#ece78a032e8effb46b4cccead2e1d42469704a62">
test/Makefile
</a>
</li>
<li class="file-stats">
<a href="#1bdf569316de798725dc25ca011fd8c934059ca8">
test/external/align-info/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#c1e028de45803e90a096780749fdd333e396621e">
<span class="new-file">
+
test/external/align-info/test-refseq-404.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#30e40935731ae70dcc2c26b3cc9040847177c319">
test/external/driver-tool/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#1b14887dc1419d9d7132e389ce7d799771d4b85e">
test/external/driver-tool/expected/NO_SDL.stderr
</a>
</li>
<li class="file-stats">
<a href="#36cd73fbe46deee986c4e9d39d03f5a8133af27d">
<span class="new-file">
+
test/external/driver-tool/expected/bitmap.stderr
</span>
</a>
</li>
<li class="file-stats">
<a href="#fc492ff8a05adc30cb9f1d7f5a8b3c7ba48944d6">
test/external/driver-tool/expected/vdbcache.stderr
</a>
</li>
<li class="file-stats">
<a href="#fc27a32f10c849eeb948ff97b3fca7233e3647f5">
test/external/driver-tool/test-json-parse.cpp
</a>
</li>
<li class="file-stats">
<a href="#8b954f25ea2b9cb58a3af83ae71914e124ab865b">
<span class="new-file">
+
test/external/driver-tool/test-opt-bitmap-Debug.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#f50af8e38fafff2376ae599e76f745c2667de489">
<span class="new-file">
+
test/external/driver-tool/test-opt-bitmap.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#85ef49d62bc06c07e3cf88ddbd92b29ab3f15e53">
test/external/fasterq-dump/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#74b2cbe06b8f0c54c17d0a69dd9423ff23220005">
<span class="new-file">
+
test/external/fasterq-dump/simple_test.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#f07cc3e36ea82abdb6532ca4f466634352dd7b49">
<span class="new-file">
+
test/external/fasterq-dump/slowtest-fasterq-dump-dot-in-output-path.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#80f2d846fe7628d58f5ee99fa334b1c21252fab0">
test/external/fasterq-dump/test_for_read_id_cSRA.sh
</a>
</li>
<li class="file-stats">
<a href="#6158fbc5f0602ef163690fcbddcc59624f6ddd47">
test/external/fasterq-dump/test_for_read_id_flat.sh
</a>
</li>
<li class="file-stats">
<a href="#55f0cce75a458553aa6377aed9a681b32af948d2">
test/external/kdbmeta/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#a6cc6be5d0ceef66cfa49c392cfc5f93970a1499">
test/external/ngs-pileup/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#5bdad96ba52ebdd0aae71ebaa5f8ff51ced642a2">
test/external/ngs/testy-the-bear/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#99fac08b4759f0cfbef7dc3ef60fe7747f249ded">
test/external/prefetch/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#a9bfa42a71b57c45eb249306ef41ba1c95f0a93b">
<span class="new-file">
+
test/external/prefetch/data/bad-kart.krt
</span>
</a>
</li>
<li class="file-stats">
<a href="#ab29d7b10f2bd51bd3aa868bdaf41eb031a9126f">
<span class="new-file">
+
test/external/prefetch/expected/err
</span>
</a>
</li>
<li class="file-stats">
<a href="#278ebfdda4d1d9423e539b912ccc8b381374c922">
<span class="new-file">
+
test/external/prefetch/expected/out
</span>
</a>
</li>
<li class="file-stats">
<a href="#29edfd7c6fc5e4fbdd3d44f2a18ebdcc8f55a0b7">
test/external/prefetch/runtests.sh
</a>
</li>
<li class="file-stats">
<a href="#00fa1aa3389f28f0d174a793a84d049497593b37">
<span class="new-file">
+
test/external/prefetch/test-bad-kart.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#26c5bfd24eb1bde1b261eab4a6f14ca6279dc662">
test/external/prefetch/urls_and_accs.pl
</a>
</li>
<li class="file-stats">
<a href="#5ac23d4143902adc4164491cd4c93046a3d453da">
test/external/sam-dump/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#c6147ce8522af91949e0f78dac0deb37b7335254">
test/external/sra-info/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#f773864fac88ac6b65cfbf9012223b633efbed3a">
test/external/sra-info/expected/1.2.stdout
</a>
</li>
<li class="file-stats">
<a href="#4ebe065bf92ba11d816ece7253a89c3de9c45598">
<span class="new-file">
+
test/external/sra-info/expected/11.0-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#33e01dc7ae07a16975c05200a961597378453ac4">
<span class="new-file">
+
test/external/sra-info/expected/11.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#644a79dde40c999798eff69e9a27d786f2143374">
<span class="new-file">
+
test/external/sra-info/expected/11.1-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#27cacacdbc1df924277ccd42c6f354b07e4b81e0">
<span class="new-file">
+
test/external/sra-info/expected/11.1.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#41f27dfb0b8c3d640565fc2761408ce880eb2a6a">
<span class="new-file">
+
test/external/sra-info/expected/11.2-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#f6ab5e4e21326e315d895ad5d695494eaed4164d">
<span class="new-file">
+
test/external/sra-info/expected/11.2.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#fe8029a7a75df6765780fdcc8d527c285ed38eee">
<span class="new-file">
+
test/external/sra-info/expected/12.0-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#5290f6d215a48b5ba2bc2a39d1cb00f8e98805d7">
<span class="new-file">
+
test/external/sra-info/expected/12.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#8821d72405889d1f5fddf593e6683271a9389245">
<span class="new-file">
+
test/external/sra-info/expected/12.1-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#993a5425d0ab22863821207fc1dc2476981555ee">
<span class="new-file">
+
test/external/sra-info/expected/12.1.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#1bd6bdb70bda1dbae1ec3168aed2d7dfee5c6c43">
<span class="new-file">
+
test/external/sra-info/expected/12.2-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#1f6faf16bb7d51ed6cf56eb15e631bb2e51d5033">
<span class="new-file">
+
test/external/sra-info/expected/12.2.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#87aa0250b93dfe6a5be86e5a6dd236de57e2182a">
<span class="new-file">
+
test/external/sra-info/expected/12.3-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#a9a11ad96d73351e8e57035211d7119955d4850a">
<span class="new-file">
+
test/external/sra-info/expected/12.3.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#de6bbc6577cf790d18fe19c572604d172de4bfd9">
<span class="new-file">
+
test/external/sra-info/expected/12.4-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d531e6cced9a17b332936f12fd76a2406c9d2a0">
<span class="new-file">
+
test/external/sra-info/expected/12.4.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#cc2a2f43f501348d0dd78c74a99ef036535c21ad">
<span class="new-file">
+
test/external/sra-info/expected/12.5-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#485a5fa3e25b9164f8524a7f598121b78321e528">
<span class="new-file">
+
test/external/sra-info/expected/12.5.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5da432fbc164dd51db57718239ece75a297b87f">
test/external/sra-info/expected/2.0.stdout
</a>
</li>
<li class="file-stats">
<a href="#4bf063cfc6ebd61d114355a9777621acc4c36638">
<span class="new-file">
+
test/external/sra-info/expected/4.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#9dfc9561df2330dbcb7e39d57630837fbd125a8c">
test/external/sra-info/expected/6.2.stdout
</a>
</li>
<li class="file-stats">
<a href="#2a685d0c311d1a85710fa59025a2b90760c64278">
<span class="new-file">
+
test/external/sra-info/expected/6.3-alt.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#fe7ff46958b901c694103105f1b84b8eb557c244">
<span class="new-file">
+
test/external/sra-info/expected/6.3.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#3e11d70d7c466bd1d38208dae7d65ac2fadadba4">
test/external/sra-info/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#8ce7daaa7d419f1a8ad10d996b9a3f5b9fd45d46">
test/external/sra-info/test-sra-info.cpp
</a>
</li>
<li class="file-stats">
<a href="#b2fd8e8a3f4db75de46d43676ad3aa3534a38c1e">
test/external/sra-pileup/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#534e504c8dde836190bb604078de2c276f77a277">
test/external/sra-pileup/runtests-slow.sh
</a>
</li>
<li class="file-stats">
<a href="#0ecdbcb13ed493b31cf2ed066d1a52c4257b7b9e">
test/external/sra-stat/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#f39cfaa03f16dfccb8eb8e5852be4664218d03ba">
test/external/sra-stat/expected/SRR053325-meta
</a>
</li>
<li class="file-stats">
<a href="#bbe60742fa8ef982b2a716fb2c020ecc3aad3f5d">
test/external/sra-stat/expected/SRR19599626-meta
</a>
</li>
<li class="file-stats">
<a href="#2f504ccd78f70ac06cb2aadb60156fffe594fd3a">
test/external/sra-stat/test-sra-stat-local.sh
</a>
</li>
<li class="file-stats">
<a href="#f4a09bfcd52b0c5908746c4bc92fb7005d9d7777">
test/external/sra-stat/test-sra-stat-slow.sh
</a>
</li>
<li class="file-stats">
<a href="#1be2923dc72db98254df17a2c76846b2f1fc0bf3">
test/external/sra-stat/test-sra-stat-unaligned-bam.sh
</a>
</li>
<li class="file-stats">
<a href="#422f2ae90fbe2d78e8f9898080ed8e11a318b17d">
test/external/srapath/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#38377288391cd2ae16df134acab31610b3805b5f">
test/external/srapath/test-srapath.sh
</a>
</li>
<li class="file-stats">
<a href="#933b242d3eab569e85537ba6ec603fd643fa577f">
test/external/vdb-config/test-vdb-config.pl
</a>
</li>
<li class="file-stats">
<a href="#0d38778304178c33e565feb729f2ac2fd7cb96b1">
test/external/vdb-dump/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#16bcbff0ea3b85b77e43682ec46a7bae2ce7f78e">
test/external/vdb-dump/expected/7.0.stdout
</a>
</li>
<li class="file-stats">
<a href="#03565028bba5dfd8e00302b7c61af98cf3b50b71">
test/external/vdb-dump/vdb_dump.sh
</a>
</li>
<li class="file-stats">
<a href="#d15b42b97c31a35a6f579c6a486936ecea6be0c2">
test/external/vdb-validate/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#b92cd506fb728ed45f538214e12ff73cf360f6c3">
test/external/vdb-validate/expected/CONSISTENCY
</a>
</li>
<li class="file-stats">
<a href="#482c901acf97fc500443b73ac7bc0d9d5b6d6c26">
<span class="new-file">
+
test/external/vdb-validate/expected/CONSISTENCY_and_CRC
</span>
</a>
</li>
<li class="file-stats">
<a href="#df11b9918e8a51dafa9df7321a83f60c538e9521">
test/external/vdb-validate/expected/READ_LEN
</a>
</li>
<li class="file-stats">
<a href="#26d4d426ce45e56b0c12ee4e5576b9cd5eafccad">
test/external/vdb-validate/expected/ROW_GAP
</a>
</li>
<li class="file-stats">
<a href="#f34275b8505cb48be6cb0374056ff19adfff46e6">
<span class="new-file">
+
test/external/vdb-validate/expected/no_crc
</span>
</a>
</li>
<li class="file-stats">
<a href="#fbb008828c53caaebfb6edd1ae709824a9bf588f">
test/external/vdb-validate/expected/no_sdc_checks
</a>
</li>
<li class="file-stats">
<a href="#1620c79ea0fafdff2e1d0d27d156363180c9244e">
test/external/vdb-validate/expected/sdc_len_mismatch_1
</a>
</li>
<li class="file-stats">
<a href="#a0ebce17dc182deaac30d23c7f5b80b543271bda">
test/external/vdb-validate/expected/sdc_len_mismatch_2
</a>
</li>
<li class="file-stats">
<a href="#9adae98b0a3cbf78ea9801d9b08d77168a34b99a">
test/external/vdb-validate/expected/sdc_pa_longer_1
</a>
</li>
<li class="file-stats">
<a href="#b4067f47eae9855ccb13e351f1d3cc9ac8834c4c">
test/external/vdb-validate/expected/sdc_pa_longer_2
</a>
</li>
<li class="file-stats">
<a href="#f143baa88e47d83d669268aebd5bec29648a00e2">
test/external/vdb-validate/expected/sdc_pa_longer_3
</a>
</li>
<li class="file-stats">
<a href="#7020d23cab8995f90c374dedf017906c5f96271d">
test/external/vdb-validate/expected/sdc_seq_cmp_read_len_corrupt
</a>
</li>
<li class="file-stats">
<a href="#210f5b88d53702cea165ab4ef3b147f3871afd85">
test/external/vdb-validate/expected/sdc_seq_cmp_read_len_fixed
</a>
</li>
<li class="file-stats">
<a href="#f826777a68e280804c9f147e056664f2eb7624dd">
test/external/vdb-validate/expected/sdc_tmp_mismatch
</a>
</li>
<li class="file-stats">
<a href="#c098b58b41a9df54a7d2fc1d3dba983fd75ee4fd">
test/external/vdb-validate/generate-test-data-with-unredacted-reads.py
</a>
</li>
<li class="file-stats">
<a href="#c1f847dda845cce27fd269333b5cac33f4959717">
test/external/vdb-validate/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#c330335effc8cc819f4c131172437323d6ea5cdb">
test/external/vdb-validate/vdb_validate.sh
</a>
</li>
<li class="file-stats">
<a href="#4b2102a2764f406c63a0904a5017bf6ca4c84988">
test/external/vdb-validate/vdb_validate_redact.sh
</a>
</li>
<li class="file-stats">
<a href="#f1183a2b81167b061a0c3082950fe9e86c9ed499">
test/internal/align-cache/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#10ceeeb361d38ecf602b039bd986e7cc6247f7e1">
test/internal/align-cache/runtest.sh
</a>
</li>
<li class="file-stats">
<a href="#97604b8079de47c755714f98e751f2f51506b594">
test/internal/copycat/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#c91c86727320c38594ff9ef0ce5997381546a93c">
test/internal/make-read-filter/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#ff76418aecb434f4d85f9c00d173905567ae0fe8">
test/internal/read-filter-redact/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#45631b32e7315f1e8f63e612594698d7e63d9049">
test/internal/test_sanitizers/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#05520d1a961e114124ac964cc6970f508449b929">
test/internal/vdb-copy/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#612e604c1a7c7b454e0757139e6e5b0aea6255ac">
test/internal/vdb-copy/redact-test/generate-test-data.py
</a>
</li>
<li class="file-stats">
<a href="#013c20295f571e8941e61823f350e5dd817d5c6f">
test/internal/vdb-copy/test-redaction.sh
</a>
</li>
<li class="file-stats">
<a href="#4fbd1a31455531be7c713fdf7a58a22179305f30">
test/internal/vdb-diff/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#788fe4b932a7f7bb87c88d1836d3c48a4a1e1371">
<span class="new-file">
+
test/libs/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#d0803426fd8e7a3188308f300266a4ddb34dde92">
<span class="new-file">
+
test/libs/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#6950a795d9f0e1d030513db863ca5bdbd20650b2">
<span class="new-file">
+
test/libs/kfile_stream/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#aa6100bb02631a30d752b26cfbe341cf7f56b702">
<span class="new-file">
+
test/libs/kfile_stream/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#7e6af4ac2537968c870855f9e697248fc6fe94b6">
<span class="new-file">
+
test/libs/kfile_stream/custom_stream.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4963b1adee080b177902aa48721b379928f0377">
test/loaders/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#ec641c812e69a069a8bc24e6ce9fb330f9edac9b">
test/loaders/Makefile
</a>
</li>
<li class="file-stats">
<a href="#81ed0d83df4501ad8693a89ff7eeb84eb68b3a81">
test/loaders/bam-load/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#037c11390a61f65b0b9e5a94652827b917f10c11">
test/loaders/bam-load/Makefile
</a>
</li>
<li class="file-stats">
<a href="#db4611fe46671759c7d29bf324888676c0a8d359">
test/loaders/fastq-loader/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#ad127bcfdea5dc3891f68a98fe4d159184c530b0">
test/loaders/fastq-loader/Makefile
</a>
</li>
<li class="file-stats">
<a href="#74278cd65b8fc2d1092d8ddfb2ef6c35967f11cb">
test/loaders/fastq-loader/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#8bf79085d5f2e9d8a81e6cec6b47a8abcf541709">
test/loaders/kar/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#c95af7f89d428a0be393b192a7ef1839b6988405">
test/loaders/kar/Makefile
</a>
</li>
<li class="file-stats">
<a href="#b06e8ff4f1e8fa37f0157f2d2af35109a32d9363">
test/loaders/loader/Makefile
</a>
</li>
<li class="file-stats">
<a href="#6b9bc5c43ac7528c7a180ee8898c0a86f1e44bb8">
test/loaders/sharq/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#00eabad152b890c7d3469ff87e4f2c24adfe896c">
test/loaders/sharq/Makefile
</a>
</li>
<li class="file-stats">
<a href="#f637c4c870034ff2d6f3733980742a954517ba9e">
<span class="new-file">
+
test/loaders/sharq/expected/DbMetaMultipleFiles.meta
</span>
</a>
</li>
<li class="file-stats">
<a href="#0169b9577ce346cf8871f5baad494dd9292d3c85">
<span class="new-file">
+
test/loaders/sharq/expected/DbMetaMultipleFiles.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#429775b9096bddc86b5a11013df67633811d5d3f">
<span class="new-file">
+
test/loaders/sharq/expected/DbMetaSingleFile.meta
</span>
</a>
</li>
<li class="file-stats">
<a href="#463fcff0efbe1a7190066a3f09de83bdfe5adac0">
<span class="new-file">
+
test/loaders/sharq/expected/DbMetaSingleFile.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#f9b4514bb0feca643c55e6961adb15484f09f32e">
<span class="new-file">
+
test/loaders/sharq/expected/MetaMultipleFiles.meta
</span>
</a>
</li>
<li class="file-stats">
<a href="#afd4f48b22f55df86387a7263bc2fb9282d5978c">
<span class="new-file">
+
test/loaders/sharq/expected/MetaMultipleFiles.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#75abd38e4525d06bf7f8014c75d7de329d559400">
<span class="new-file">
+
test/loaders/sharq/expected/MetaSingleFile.meta
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4b289b994ed5da82f6a1c1519b897b8e8d7c541">
<span class="new-file">
+
test/loaders/sharq/expected/MetaSingleFile.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#035955b2007103e40d3f4728b37fb5d090f89811">
<span class="new-file">
+
test/loaders/sharq/input/r1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce1b676826c1c0d80d06eb6850d971c34bddf8ec">
<span class="new-file">
+
test/loaders/sharq/input/r2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#5da5ae2637842675eff4ccd65bdb4578aa65b0cd">
<span class="new-file">
+
test/loaders/sharq/runtestcase-meta.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#59413afff533b82c1c28fe96da6c144603337bfd">
test/loaders/sharq/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#f919419d773db7498b06e1e26742c6af49904c6e">
test/loaders/sharq/test-sharq-parser.cpp
</a>
</li>
<li class="file-stats">
<a href="#0b8b7fc8856459c93c6f512ab9a68dc828bd240c">
<span class="new-file">
+
test/loaders/sharq/test-sharq-reader.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#808a49e6d4e5691159239e9e66c18c61b265698b">
test/loaders/sharq/test-sharq-writer.cpp
</a>
</li>
<li class="file-stats">
<a href="#4d446bde73807d120c7d8b51edda9621e6d84774">
test/loaders/sra-sort/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#3ed0415fd1157551cf3ce204f60057637ecb2a30">
test/loaders/sra-sort/Makefile
</a>
</li>
<li class="file-stats">
<a href="#f1322e7f4cedea913d4abddfd7739583c285d8c3">
<span class="new-file">
+
test/python/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#09a83ef8ca1eec15605e6f1e2e9bdbbe44d595a4">
<span class="new-file">
+
test/python/AdditionalSchemaIncludePaths_Multiple.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#8fb0dae9e9283902f27a9d805064c4a57c4f7b43">
<span class="new-file">
+
test/python/AdditionalSchemaIncludePaths_Single.vschema
</span>
</a>
</li>
<li class="file-stats">
<a href="#dda192fa587098fbb5322bac8223bfb318fb1070">
<span class="new-file">
+
test/python/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#dd79e4ac022d34e72dbef6c02e4d516b038d215a">
<span class="new-file">
+
test/python/GeneralWriter_Test.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#a06a6abf5c5e6f5655a4a0d37aec6bdad555b4de">
<span class="new-file">
+
test/python/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6aac14875f6c3f542e5835e43d1e7908eb12a3d">
<span class="new-file">
+
test/python/expected/Test_GeneralWriterPy.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b4144d1e321b306348e9a19f93251b1b02e5052">
test/samline/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#e1ab0eaed33c510b36dbc3d723d03595c3171ab3">
<span class="new-file">
+
test/schema/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#8b399ad9b6ec00bc2594776f3e384e9e0d994ad1">
<span class="new-file">
+
test/schema/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a34a486cf8b2e59724b6ae871cfeb1d3ca7390a">
<span class="new-file">
+
test/schema/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#40c890efc883505cb7f9a3b79d21f6ef897c34f8">
<span class="new-file">
+
test/schema/db/db/md/cur
</span>
</a>
</li>
<li class="file-stats">
<a href="#83211a60df1c2da7899b8384611ec768b0079eae">
<span class="new-file">
+
test/schema/db/db/md5
</span>
</a>
</li>
<li class="file-stats">
<a href="#53029c27927eda4d23e9663ab0dd832263b4b8ab">
<span class="new-file">
+
test/schema/db/db/tbl/tbl/md/cur
</span>
</a>
</li>
<li class="file-stats">
<a href="#e64922514e2fec357665a2cf9c61187bd46fdc70">
<span class="new-file">
+
test/schema/db/db/tbl/tbl/md5
</span>
</a>
</li>
<li class="file-stats">
<a href="#c9e342c87a214abacb93d80506e0875e74ba7f0a">
<span class="new-file">
+
test/schema/test-schema.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#75a66ef5352abf3f3b6fd04f589786e142109f28">
<span class="new-file">
+
test/schema/test_VDB-5250.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e21133207a02d3617d7ef21f0fcf8879cc66a034">
<span class="new-file">
+
test/schema/test_VDB-5251.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#b65cd0c76378892c8a676de38e9a5223db47f6e3">
<span class="new-file">
+
test/search/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#27219644e2a32f0c4dcd3adf2331b8b55c9f3b11">
<span class="new-file">
+
test/search/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#e965fb117cd05a64dfdd0c71083e8b4986ca2ce5">
<span class="new-file">
+
test/search/PerfCounter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3f16ae2fa5d593634552a540fc3c5b18d317fc41">
<span class="new-file">
+
test/search/agrep-main.c
</span>
</a>
</li>
<li class="file-stats">
<a href="#beb2f92d941312f8c1fbb83fc8cd6043fecd492c">
<span class="new-file">
+
test/search/search-vdb.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#48a32c3d14c3c23e47207a14ec87c2a9a85db820">
<span class="new-file">
+
test/search/search-vdb.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#5be614122db846bed7a2e36a28f38af96595529f">
<span class="new-file">
+
test/search/test-agrep.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#12a92f6c551e96d8ad24198463e8464c456f5c02">
test/tarballs/smoke-test-ngs.sh
</a>
</li>
<li class="file-stats">
<a href="#ba4ccc8d1b76e5f26fa9af0b6369beb661347ce9">
test/test-tools/qa-stats/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#1dbc9e3a296384a1166205a88484bc271bd205e7">
test/test-tools/qa-stats/Makefile
</a>
</li>
<li class="file-stats">
<a href="#57abe34d9bb5f82786abd75194e6d5825689b12e">
<span class="new-file">
+
test/test-tools/qa-stats/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#93013e75463bb3e4de85d231a2ce19a4273ad6ab">
<span class="new-file">
+
test/test-tools/qa-stats/expected/Test_qa_stats_Finger_1.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#6bdd1d253f4af3fc5286d6687a6b164ab9f9951d">
<span class="new-file">
+
test/test-tools/qa-stats/expected/Test_qa_stats_Finger_2.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#c6599bca494bdd26d846ec64ea5fb8fdbfc746d2">
<span class="new-file">
+
test/test-tools/qa-stats/input/001.R1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#604075d595d7625f00a5e87833fc2f582a757b9b">
<span class="new-file">
+
test/test-tools/qa-stats/input/003.R1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#43395df9d6e84a7633e6300d9330c04a4298cc9d">
<span class="new-file">
+
test/test-tools/qa-stats/input/003.R2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#730117fdc1dbd8fa84c34b0dd5d5eb1de44ff4bb">
<span class="new-file">
+
test/test-tools/qa-stats/input/003._I1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#ecaccdaacd2880982f692ff75d35450091b3984e">
<span class="new-file">
+
test/test-tools/qa-stats/input/003.t_I1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#5580d5183e1beefacd2b3bc01b2aa75b6bb332d8">
<span class="new-file">
+
test/test-tools/qa-stats/input/003.t_R1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#ed1b7b5ad465a6808c53c3b5c0f5a77589c3c038">
<span class="new-file">
+
test/test-tools/qa-stats/input/003.t_R2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c73c20899df9a736297fd7101b03bb73c48fe52">
<span class="new-file">
+
test/test-tools/qa-stats/input/009.test_I1_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#85e5d6a1a4631b07a2ce4f11c67538d67dfcce3c">
<span class="new-file">
+
test/test-tools/qa-stats/input/009.test_R1_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#fd66081dda2315bfe0a92353521af840a3185699">
<span class="new-file">
+
test/test-tools/qa-stats/input/009.test_R2_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b0a71ab3bb3c897b434b010529d23e0494d8ddf5">
<span class="new-file">
+
test/test-tools/qa-stats/input/009.test_R3_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#55b47014f2dca34ab8e24a7da48ebc29f2a8937f">
<span class="new-file">
+
test/test-tools/qa-stats/input/012.test2_I1_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ff5314b7d9f028e6c36f250a8fbc0b53b564325">
<span class="new-file">
+
test/test-tools/qa-stats/input/012.test2_R1_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#a7fd1c4ba2e6a75d63bcf13df799da7c6be76b2e">
<span class="new-file">
+
test/test-tools/qa-stats/input/012.test2_R2_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#14c8ccd2d67cb23cb5dba2c68598effa31d740c2">
<span class="new-file">
+
test/test-tools/qa-stats/input/012.test_I1_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb480a8dbb24afb73d3aaff9f5b17809ea67c240">
<span class="new-file">
+
test/test-tools/qa-stats/input/012.test_R1_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#5d612b769c7c195ec8d4a32a3c78d9d02cc0d202">
<span class="new-file">
+
test/test-tools/qa-stats/input/012.test_R2_001.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d3c5d1738b26745bdd2d6776ff73b84452b2ef1">
<span class="new-file">
+
test/test-tools/qa-stats/input/013.t_I1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3792e5cde9545dd1c71570c662a6c75da460b8d">
<span class="new-file">
+
test/test-tools/qa-stats/input/013.t_I2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b0d8020f4ce3747f2de3b87897085b22466f00e8">
<span class="new-file">
+
test/test-tools/qa-stats/input/013.t_R1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#4e335a69b172a28870e0b457000c77b7561f1c88">
<span class="new-file">
+
test/test-tools/qa-stats/input/013.t_R2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#404326fdc52a05548b46e6633f32ad7f1147780a">
<span class="new-file">
+
test/test-tools/qa-stats/input/014.R1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#db5940e3fa3c0a06fa6c85475730479a91b74bb7">
<span class="new-file">
+
test/test-tools/qa-stats/input/014.R2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#24caa586c0fd2b407119ca731431ce5e77a3d4d5">
<span class="new-file">
+
test/test-tools/qa-stats/input/1.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#7d2d518ef6df11e1ff6e0c57a1c9280c55e375e3">
<span class="new-file">
+
test/test-tools/qa-stats/input/1.2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b93645b00a090c9ff8dbdbb409729a8a72b2ba6d">
<span class="new-file">
+
test/test-tools/qa-stats/input/1.3.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#fd594f6468919f3a8e1ace8414c8f15f12e6417a">
<span class="new-file">
+
test/test-tools/qa-stats/input/1.4.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#295b16cc4d98ed47f3833e65da16578a6cc31167">
<span class="new-file">
+
test/test-tools/qa-stats/input/10.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ac259bd41fdf2fef454cd105ab1afe712941106">
<span class="new-file">
+
test/test-tools/qa-stats/input/11.0.1.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#d5a91554f4333a55e2d3905587e646c3155176d3">
<span class="new-file">
+
test/test-tools/qa-stats/input/11.0.2.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#59e5cf1f927059506a852564f2aa101e3ee48ec1">
<span class="new-file">
+
test/test-tools/qa-stats/input/11.1.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#c36295e13e4f5ba257034ca1ef8746b24b9e8c66">
<span class="new-file">
+
test/test-tools/qa-stats/input/11.1.2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#56d80a9b66bf1889f736c2f8aff0c1aa4620fe31">
<span class="new-file">
+
test/test-tools/qa-stats/input/12.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#26716c9babf8b99bbb7f56e28df8ee9333e5ee8d">
<span class="new-file">
+
test/test-tools/qa-stats/input/12.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#c9899c694b95644404b9af6e7016c42f8499db0b">
<span class="new-file">
+
test/test-tools/qa-stats/input/12.2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#ed037a731fe5043558aaf91aaac04957927f3e62">
<span class="new-file">
+
test/test-tools/qa-stats/input/13.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#1c2e85af340ab46a5b46e0fc50cd47a57a1b5076">
<span class="new-file">
+
test/test-tools/qa-stats/input/13.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#3840e8d6e191a13e4596bcbeb1d06688ec20432a">
<span class="new-file">
+
test/test-tools/qa-stats/input/14.0.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#f26a23698b7f776f0e3b451bd8f3ef1ae0bf0c84">
<span class="new-file">
+
test/test-tools/qa-stats/input/15.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#049ba16cafaa7973c54116dde120a4db688ae283">
<span class="new-file">
+
test/test-tools/qa-stats/input/16.0.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#d6bb71e8898908650bace53d77acbd24128133cd">
<span class="new-file">
+
test/test-tools/qa-stats/input/16.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#09664d5e84f167fbdcb0b1cd4b73ad44754bab06">
<span class="new-file">
+
test/test-tools/qa-stats/input/17.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#2c723cbb58f6d0baeea57479e483b41fbfea26ed">
<span class="new-file">
+
test/test-tools/qa-stats/input/18.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#73890c42af43f6af496e4c3a5869f3dfb2798e3c">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.1.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#0365f878200a8400bc0dd4fb3296ae76620a4f5b">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#11eb291024c49029e14c590e91b641ff6d7cd705">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#53022e7ac03716a3e403ed7e9d7fbcbc84886ed1">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.3.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#bd419b8ef7c5b1207005cc2f18128b9f161a0984">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.4.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#941ffba4bae2dfd8bd5f94114d721e58dfdde6e1">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.5.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#29a84525f4432bd51bc84e9d6c8d7f1bd280eede">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.6.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#587e5e3d7584a3629f361ded85cc497d6ad40173">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.7.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#0bf43d98027343d2d3e60e900ce1666faff018e0">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.8.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#6ded26180f085b1de7a7878f72003ccea0822890">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.8.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e0068d3e8b014ee63abfd369459ffda4aa90e14">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.9.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#6040d3cb58f485899f4be008657108b2c0ec218d">
<span class="new-file">
+
test/test-tools/qa-stats/input/2.9.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#d9a5ab51161c64103c2b11bddf82dca6000736df">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.1a.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#26ab5df823f1473fb4bd96918ba1e33ae2c82b37">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.1b.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#029042e46c11c67f593406b46150e7c1161ec58d">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.2a.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#e0a504bff4e72160993646826d84b18a2ea0b8ca">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.2b.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#7314e054113c5052a0d305ea61f807d12771e5c4">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.3a.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#0bbdc04e02de9a9abe9e95ef228f8c460d02f88f">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.3b.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#f20f16ed49429ddf51f2885d38e839b890ce0293">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.4a.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#5fa8899e5079e8315f11617a4186b18ed7b70daf">
<span class="new-file">
+
test/test-tools/qa-stats/input/3.4b.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b4f214a78ceaecc51e90251b790316b2d2570471">
<span class="new-file">
+
test/test-tools/qa-stats/input/4.4.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#5b42bfedb9b29c9fbc2e6fff4359f580b0c1f382">
<span class="new-file">
+
test/test-tools/qa-stats/input/4.5.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#82df0cbfdcaaed0b8799704bdc1d5630609b8b5c">
<span class="new-file">
+
test/test-tools/qa-stats/input/4.5.2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#09fde074d9131ce72dbc41c4e3218d280dfedeab">
<span class="new-file">
+
test/test-tools/qa-stats/input/4.5.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#b6aa67a83beeb0167a1f8ca978bdc4a5f5be86af">
<span class="new-file">
+
test/test-tools/qa-stats/input/4.8.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#a4973203d0b0a21ed037f466added13d378f769c">
<span class="new-file">
+
test/test-tools/qa-stats/input/4.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#a2095ec39975c193f76c17e6534d9f81de06c88c">
<span class="new-file">
+
test/test-tools/qa-stats/input/6.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#0d02c5ab629cd4d148eb391ad370ced95d426b9d">
<span class="new-file">
+
test/test-tools/qa-stats/input/7.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#330fa5043eca68b92282a6d7a405e16f8e6c9f27">
<span class="new-file">
+
test/test-tools/qa-stats/input/7.2.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#39c17864da53b1bdb4a848e85e71737ffb1b4cba">
<span class="new-file">
+
test/test-tools/qa-stats/input/7.3.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#afaf9a25b508df512deac0871481fa6b2af12947">
<span class="new-file">
+
test/test-tools/qa-stats/input/8.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#f71d84e6e08c57126f124b5a172be98dda552e24">
<span class="new-file">
+
test/test-tools/qa-stats/input/8.1.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#51e8d7bf7fcf423dee7a6aa59977c8432d000dfe">
<span class="new-file">
+
test/test-tools/qa-stats/input/9.0.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#0f2e218e94b20437a45ca68813bc1eaeac569b59">
<span class="new-file">
+
test/test-tools/qa-stats/input/ERR3487613.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#b6d78754a1164bc0f5705bd096cb84888af2b49b">
<span class="new-file">
+
test/test-tools/qa-stats/input/unaligned.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#7515f228a9eba81627fb202cab7a6ea53e254280">
test/test-tools/qa-stats/make-test-input.pl
</a>
</li>
<li class="file-stats">
<a href="#9f6c76b9dfa0558b57ec8a47ce2e902bddca4596">
<span class="new-file">
+
test/test-tools/qa-stats/runtestcase.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#5fbaddc20f5186af60ac8e46ad1370eb9415f9cd">
test/test-tools/qa-stats/runtests.sh
</a>
</li>
<li class="file-stats">
<a href="#5d9871df829c2cffdde001617a03a81d0683ba8d">
<span class="new-file">
+
test/test-tools/qa-stats/test-finger.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#255abd5b3b5a2fe50bf5b6eed8f0c3ee3444f5db">
<span class="new-file">
+
test/test-tools/qa-stats/test-hashing.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f719cb2b91b46c349f2ffc6d794248ed54932443">
<span class="new-file">
+
test/test-tools/qa-stats/test-input.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#efce72d40c1ddd116cfd12d0bdcb8e7e0ee09f87">
<span class="new-file">
+
test/test-tools/qa-stats/test-output.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#edef31f5df4dbf9b5604b44918ed743883fa00d7">
<span class="new-file">
+
test/vdb/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#b7462764332d5a287c44d307073c5f856774bfc6">
test/vdb/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#7e4104dcbc25542562a16e06e61f21db2dbe32b9">
test/vdb/test-vdb.cpp
</a>
</li>
<li class="file-stats">
<a href="#bc76845b430d4ad4e2a2ee9ca23abd0e33cc50e7">
<span class="new-file">
+
test/vdb/test-wvdb.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#bcdc8f8e8af5d5b2d2de689c8dc6a3c33f6e073a">
tools/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#d2c0534c9d8c6268b6b49a483b189993121e02e1">
tools/external/driver-tool/debug.hpp
</a>
</li>
<li class="file-stats">
<a href="#dda2c7b3cea4cec512d8dde072ff1d64a72bbb5d">
tools/external/driver-tool/json-parse.hpp
</a>
</li>
<li class="file-stats">
<a href="#511d5a9671d218ca927e4feb3dd457542e8e4177">
tools/external/driver-tool/run-source.cpp
</a>
</li>
<li class="file-stats">
<a href="#4a9b45cfecb3ca4d5e488b77c42058cf3e3979d7">
tools/external/driver-tool/run-source.hpp
</a>
</li>
<li class="file-stats">
<a href="#4b13b96e64b5636fdaf60109b06eb35e56008b98">
tools/external/driver-tool/sratools.cpp
</a>
</li>
<li class="file-stats">
<a href="#373b3074e78401d430a42946f006a7fb79db95aa">
tools/external/driver-tool/tool-args.cpp
</a>
</li>
<li class="file-stats">
<a href="#a12cc438c87256f3f39f6884c1f9d8af811baf98">
tools/external/driver-tool/util.hpp
</a>
</li>
<li class="file-stats">
<a href="#59b013e48c27e701eebcaee5bec0dd0161dc4f63">
tools/external/fasterq-dump/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#9591f3257435994539236d8e6396acf609bdc575">
tools/external/fasterq-dump/cleanup_task.c
</a>
</li>
<li class="file-stats">
<a href="#511489a0ec8aa4e4d79a71bd8be17ca431ceff5d">
tools/external/fasterq-dump/copy_machine.c
</a>
</li>
<li class="file-stats">
<a href="#24b684e71ff3c687d660945f81e64491bb58ad9b">
tools/external/fasterq-dump/fasterq-dump.c
</a>
</li>
<li class="file-stats">
<a href="#81bdb8025df3624d7a8e85b8b2792588cbbe0d3e">
tools/external/fasterq-dump/helper.c
</a>
</li>
<li class="file-stats">
<a href="#fd7ee3f79eee8f1dd70095d6176e06e9b2470eb7">
tools/external/fasterq-dump/helper.h
</a>
</li>
<li class="file-stats">
<a href="#57aee87243b77471b1dc594e2b2c14638df27b54">
tools/external/fasterq-dump/inspector.c
</a>
</li>
<li class="file-stats">
<a href="#e7189a69ef6f4cea40e1c7b896f2b1dbbc27e3ca">
tools/external/fasterq-dump/locked_file_list.c
</a>
</li>
<li class="file-stats">
<a href="#34e4185120a9c5c27403e4e92abc7f725dbd18de">
tools/external/fasterq-dump/merge_sorter.c
</a>
</li>
<li class="file-stats">
<a href="#8661edad67968d26903ac619af521d322cb2a2f8">
tools/external/fasterq-dump/sbuffer.c
</a>
</li>
<li class="file-stats">
<a href="#629aa051b970d7ad52d27e1a4c589ecbb2832dff">
tools/external/fasterq-dump/tool_ctx.c
</a>
</li>
<li class="file-stats">
<a href="#a0cba73eb86bdca4517570f655c785f3e3f65b71">
tools/external/kdbmeta/kdbmeta.c
</a>
</li>
<li class="file-stats">
<a href="#cc8b994fbff3ffed71f2e62ef825e9e76d328085">
tools/external/prefetch/PrfMain.c
</a>
</li>
<li class="file-stats">
<a href="#6a0f407f3afefd14d64998ce8faef82981116d9b">
tools/external/prefetch/PrfMain.h
</a>
</li>
<li class="file-stats">
<a href="#3079a8560af28272b7718aa70606470e08a674bc">
tools/external/prefetch/prefetch.c
</a>
</li>
<li class="file-stats">
<a href="#1138084a91d027fe5ab132373e8d822b2528cc4d">
tools/external/ref-variation/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#70a1ef2024b031a46334793c1df179ce344b9096">
tools/external/sra-info/formatter.cpp
</a>
</li>
<li class="file-stats">
<a href="#e5a9c1ef499273ca279935de8ebd93851f765e6e">
tools/external/sra-info/formatter.hpp
</a>
</li>
<li class="file-stats">
<a href="#815ae3552821183a6c6b17ee30928e1c9f88ce7c">
tools/external/sra-info/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#f017175e00a6dfe451315f8e7188fd66e68c7593">
tools/external/sra-info/sra-info.cpp
</a>
</li>
<li class="file-stats">
<a href="#a5a2c91e7b7f72697ae9b02b23b1222e6e1ee850">
tools/external/sra-info/sra-info.hpp
</a>
</li>
<li class="file-stats">
<a href="#e4141494e5ab85cc6a18d0623b483fd67dc98d27">
tools/external/sra-pileup/reref.c
</a>
</li>
<li class="file-stats">
<a href="#9f6f1e8a5e851f41f73a08ccfa6d5792929bbde4">
tools/external/sra-search/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#fe90c14f9b2a89d5eaba8721dd5b726c3f241e0c">
tools/external/sra-search/test/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#65e020166a29382bab7cf326d79b3e091d2393ce">
tools/external/sra-search/test/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#7cd1d0ceffc9df699fc1a8de72c42c102ce34414">
tools/external/sra-stat/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#4048f3fb406f2487eb05d0d619a00cddfbac3ab6">
tools/external/sra-stat/sra-stat.c
</a>
</li>
<li class="file-stats">
<a href="#a71d606ba534782d3d381182bd20b7a231d73f9d">
tools/external/vdb-config/interactive2.cpp
</a>
</li>
<li class="file-stats">
<a href="#74a9c9930005cfcb4a3ceffc566bd31ed2a713a0">
tools/external/vdb-dump/vdb-dump-helper.c
</a>
</li>
<li class="file-stats">
<a href="#d4cdbe5d4d8a8697c9e4e721b52ab9629537b0a9">
tools/external/vdb-dump/vdb-dump-helper.h
</a>
</li>
<li class="file-stats">
<a href="#2961404c6b1b6495272f98886638e78a36972f6e">
tools/external/vdb-dump/vdb_info.c
</a>
</li>
<li class="file-stats">
<a href="#161e0e79272f1008d0bebb1b5355fe1a21ca99bc">
tools/external/vdb-validate/main.c
</a>
</li>
<li class="file-stats">
<a href="#a2123140f836edec723f863dcdcd51287d547deb">
tools/external/vdb-validate/vdb-validate.c
</a>
</li>
<li class="file-stats">
<a href="#96e7c86ad891e759f49422ed3a1c1fae2e33fb6a">
tools/internal/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#03522f1254f6eda2ae0f756ef8650dc51ae42c3d">
<span class="new-file">
+
tools/internal/compute-coverage/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#58426b0cbd9d1698829e7b3291ff46be86545a91">
<span class="new-file">
+
tools/internal/compute-coverage/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#6f1052b73cda1b5cc8e2610392f48bdc17f22071">
<span class="new-file">
+
tools/internal/compute-coverage/compute-coverage-ngs.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#5f17490a333667e11572954484238440dcafbda7">
<span class="new-file">
+
tools/internal/compute-coverage/compute-coverage.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#c8e2aa0088327a187cc749a1552e95b064ce8db2">
<span class="new-file">
+
tools/internal/compute-coverage/compute_cov.pl
</span>
</a>
</li>
<li class="file-stats">
<a href="#a5bc4e1f131ca1cf817f4ff82b918d7ed1e44703">
<span class="new-file">
+
tools/internal/dump_ref_fasta/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8a830e4abe5e82b93bab6f25323ebd5632171d29">
<span class="new-file">
+
tools/internal/dump_ref_fasta/DumpReferenceFASTA.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#eeece5a78cde1758bd107778f933f4452d8017d8">
<span class="new-file">
+
tools/internal/dump_ref_fasta/Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#3cf0fd36652ae69ad84e0c65e93f1ca79544345b">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#1a7dffbb5031ad61bf2f5829eb996140410ec95f">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/execandgrep.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#aa3fd8cccffb3302da2fbb045f197a4be5b95541">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/1.0-h.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#c38879bade9a6ea1980e6b35d1f38b10a790a944">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/1.1-help.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#3c5045d4080a676b83d90f8567bc264b237248e5">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/2.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#170bff4123ce9140906b20e8d8556b60e5fe16d6">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/3.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#d9918ba701e69de2443b747675785a102ccc5b80">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/3.1.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#a06b1598b5013a6e06cde16275dce7c12704e3cb">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/3.2.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#fb4ced0771e9a4004c99c146a802460141964db7">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/3.3.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#acd26004127223d98739d2ddfca22fa44d66ced2">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/4.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#705e283654524c879a732e73e812903d051a0aff">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/expected/4.1.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#91a55675b298d8c7ce80faf31a285956b51a91fa">
<span class="new-file">
+
tools/internal/dump_ref_fasta/test/runtestcase.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#303671e8faf61308c49fa31c02c4341e67bac054">
tools/internal/make-read-filter/make-read-filter.h
</a>
</li>
<li class="file-stats">
<a href="#ce0be392b953e8a1426ecff4a6ba60a864dafe23">
tools/internal/vdb-copy/.gitignore
</a>
</li>
<li class="file-stats">
<a href="#edfd51bb0525b8cfcf38626de087ea2392ff8300">
<span class="new-file">
+
tools/internal/vdb-copy/user-settings.mkfg
</span>
</a>
</li>
<li class="file-stats">
<a href="#57c131bfd90b699a4f9a3f3c94fe8cf4f5a165a7">
tools/loaders/bam-loader/bam-loader.c
</a>
</li>
<li class="file-stats">
<a href="#e29296b5ab4096da35d584094f46a1927faa5127">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#924bdd9cec0447af42e2229c5bcf6bcc6ea4ae5c">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/async_logger.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#14bd0c872af0e5c07449218fe0de2d8148ee9268">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/cfg/argv.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#91f47715578c50fb956b5c49fc0b1a96c5d248f8">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/cfg/env.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#930789f2d2698cbe304c96be0433e2d25818565d">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/cfg/helpers-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d6a7b390afd2d747d152d046ac548f44a9f6d4b8">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/cfg/helpers.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ce09772cc1b59b2a9644421a46efe312ff19306">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/backtracer-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#20b0a3bf82e4bed666b9062ee64acfd1f60cc450">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/backtracer.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#29f4d0eec7480ca3b730a3d5890c1c6d651ca572">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/circular_q.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8a52c7deb5d76f111c886e4562382be229f34792">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/console_globals.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#2d0863f2c4c562c213a1eab52f9a472195ad18e3">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/log_msg-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e9e73a6ceec96bc34d8c4be04032016e2aa72362">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/log_msg.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4a063e7fc4dcb4228d5c60490631de4b0fb1d75d">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/log_msg_buffer-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#96e895873f98151bfafab2d70072bf72c168cc2b">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/log_msg_buffer.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#582c7f7bc2865cfbab3e0444164fae0012450fac">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/periodic_worker-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#839e1e59d5e6ce2922edb2e3e4f87c60f88f3096">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/periodic_worker.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e9933d6b7051458ad1b327c16e588cc38cda137d">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/registry-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#9eb29f946ee305895347ed2b2056f2eeb123ad0c">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/synchronous_factory.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#7775867523bef024c553c2aaab96c51ce2e44df2">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/details/windows_include.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#257db7e2f73581d780dfc2ab7e9751eecb59f2ee">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/args.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8f3e7799ddc0fe49515cd5a2ee165136f86c1c34">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/compile.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d83dffcd5295a058703f7da78ea4f35a4596367b">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/core.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#568a44ad73f57003d09fa412f52ca01983664047">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/format-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#a0ec31c9f8576e7402d594661c686d2a6042175e">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/locale.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#75500d3515c48ee712efe891aef842b6049ebe41">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/ostream.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#f9166fdd2ab32f6be9cabfa4d4e40a88ff50062a">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/fmt/bundled/ranges.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#b1cf2618eb7533f70af7778407e2c24f7d0f26a8">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/formatter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3269b6be75be773f61b179fdbb60fb4932029b77">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/pattern_formatter.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#20d56cecf3eeedad385c1dc8c6ffafa6483b0d39">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/android_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#2902377298ac65abad08b65e8d654783ab8c188d">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/ansicolor_sink-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8db9f3f332c6fd0f4307a62035d206799667b859">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/ansicolor_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#fb0ccd4adb5f267dc27cfa6be6512f40640e571e">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/base_sink-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#dbc24e98e228b18dc95a89b9928cf41ea169b88e">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/dist_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4355230a6c40a49ac6c0c1fa17adf6f40f42819">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/null_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3680c608f1b9c13bab287d609a71ffa80cc117a7">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/ostream_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#435cfb8d70274441182b56a30f09899cf1865d17">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/ringbuffer_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#889225332447de70c41110b7b98297cd8d13ab71">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/sink-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#ce318f4a1119010e622d4c5918ada1d491e3932e">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#af1ff45aa5be1df254d94dc18a73bbd6d33b8528">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/stdout_color_sinks-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#35721707501a1cc02f2b6ae319909bbbd76df17d">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/stdout_color_sinks.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#776df71ee3426366c244e276d711e2b7f87a2855">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/stdout_sinks.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#eec2bd2b4e2ec09819c2d766fef12065a8968eaf">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/syslog_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#7329f677c8229579b6386a7350a97548485f41cb">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/systemd_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#71742bf15b96927bea765aa8364619f98a9f07b9">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/tcp_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#c7c333550f9fb5dd056f644498e5976c10bfdfe5">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/wincolor_sink-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#43e76b6f4e84b6c78f8a13197eecbb9733897401">
<span class="deleted-file">
−
tools/loaders/bam-loader/spdlog/sinks/wincolor_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e1789693f7c18605ac941ea09c6dc52cb4c6c50a">
tools/loaders/fastq-loader/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#49312487a0072fb3e70d71ef6d946ff73d2558f4">
tools/loaders/general-loader/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#51139a86cd426795b0f4e3d1e3908874b51de05f">
tools/loaders/general-loader/database-loader.cpp
</a>
</li>
<li class="file-stats">
<a href="#036096a0a7d27f0fd44e5469e81724ace130a4a0">
tools/loaders/general-loader/general-loader.cpp
</a>
</li>
<li class="file-stats">
<a href="#879f10c0a6b8de43dcf47147d16831be9ffb4336">
tools/loaders/general-loader/general-loader.hpp
</a>
</li>
<li class="file-stats">
<a href="#792434f0510a048dd2a91e35e76e7510d59a3a2c">
tools/loaders/general-loader/protocol-parser.cpp
</a>
</li>
<li class="file-stats">
<a href="#640d80d0a2471dc521ae1a981d2549d917c1124d">
tools/loaders/general-loader/test/.gitignore
</a>
</li>
<li class="file-stats">
<a href="#becb73ca83094df9338b8701d79b5c7b8d6c9379">
tools/loaders/general-loader/test/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#fe8f83c2367b54ce1d6447ab32bd36f2a2c3bc12">
tools/loaders/general-loader/test/Makefile
</a>
</li>
<li class="file-stats">
<a href="#1a77fd51cc5d4b973a09262aa016bfd1f598ff72">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/7.0.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#3f7f3bfec091796fadc665bb700e39ca741f613b">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/7.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#ec32211a6937f896e2b8562bcd577e2f27412837">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/7packed.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#1aca63e09579fa3dec40e05806af533151a0da24">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/8.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#40d9bfbfa990f1febd161c7a4b177f93d638c010">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/8packed.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#42c908f15258cf4bbbcdcc2fa6f85464c4298986">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/9.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#64305e124939995336e844ff45216cb978f8184e">
<span class="new-file">
+
tools/loaders/general-loader/test/expected/9packed.stdout
</span>
</a>
</li>
<li class="file-stats">
<a href="#6258abb5dbc7822ae7249808502f5ced7a285110">
tools/loaders/general-loader/test/makeinputs.cpp
</a>
</li>
<li class="file-stats">
<a href="#fcaa1c1eb12931942eb22752589cacb3615c2af4">
tools/loaders/general-loader/test/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#5116dc03b215004e76e169b39e45c76615645ff4">
tools/loaders/general-loader/test/test-general-loader.cpp
</a>
</li>
<li class="file-stats">
<a href="#9c297548c29e9011016941d3d694f27516f7ff6f">
<span class="deleted-file">
−
tools/loaders/general-loader/test/test-general-writer.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#b4281379efb14d848c06da282f137c2f3262f0af">
<span class="deleted-file">
−
tools/loaders/general-loader/test/test-gw-dumper.gw
</span>
</a>
</li>
<li class="file-stats">
<a href="#5805a16f2f97c39ea94369e368157a89113fcf6f">
tools/loaders/general-loader/test/testsource.cpp
</a>
</li>
<li class="file-stats">
<a href="#2dc6485083a64a3158b874b1f9acd1e14277a664">
tools/loaders/general-loader/test/testsource.hpp
</a>
</li>
<li class="file-stats">
<a href="#db29822c0aff284e9b581d64ce2a98a0e786dc27">
tools/loaders/general-loader/test/vschema/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#4925bd80373883805e2c87781921a303f8d1109d">
tools/loaders/general-loader/test/vschema/runtestcase.sh
</a>
</li>
<li class="file-stats">
<a href="#48a5146cb9773399899314ecac71ed53a45fdc90">
tools/loaders/kar/kar-path.c
</a>
</li>
<li class="file-stats">
<a href="#fca0b86435938dc176bc80e7b44a46ba54558aab">
tools/loaders/kar/kar.c
</a>
</li>
<li class="file-stats">
<a href="#a9bb60551c4718574c7021ee28681ef7f2c9796b">
tools/loaders/pacbio-load/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#b1f4880c1f50e28ef93b6135697b1441b83324cc">
<span class="new-file">
+
tools/loaders/pacbio-load/test_using_docker_and_hdf5_submission.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#f4947d30efb6ac7b2f621e891407a11f05509ed4">
<span class="new-file">
+
tools/loaders/pacbio-load/test_using_docker_and_hdf5_submission.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#8d0d95083652ac5307b880705122f0107a86c160">
<span class="new-file">
+
tools/loaders/python/fastq-load/R1.10.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#99ffc073b7a97514c10d8ac65adbcbc5f48a061d">
<span class="new-file">
+
tools/loaders/python/fastq-load/R2.10.fastq
</span>
</a>
</li>
<li class="file-stats">
<a href="#5c3571ef3dffda7193c2a1f33217d04800c3cbb3">
<span class="new-file">
+
tools/loaders/python/fastq-load/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#5ea547bae0f06425ae43dcb8cfb115a3343dd0b4">
<span class="new-file">
+
tools/loaders/python/fastq-load/fastq-load.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#ee0bec51e358dae320b662b06319a2e070ace68c">
<span class="new-file">
+
tools/loaders/python/fastq-load/test.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b9c1f942bdf733591f70f7efb3ce0a7c010c468">
<span class="new-file">
+
tools/loaders/python/pore-load/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc8d4cccc4d2a32bca3893d6798a567b44736228">
<span class="new-file">
+
tools/loaders/python/pore-load/pore-load.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f49d90466bc0fafc7ba2889d48a4db1efadc2ce4">
tools/loaders/sharq/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#5d77bed7ea85ca9f70eb9b56e0c94247988ac728">
tools/loaders/sharq/fastq_parse.cpp
</a>
</li>
<li class="file-stats">
<a href="#aa5af4a3dc1de06aa11b03aeffdc5e953054740f">
tools/loaders/sharq/fastq_parser.hpp
</a>
</li>
<li class="file-stats">
<a href="#edddb031fa96f77fc45a504fcbac782ef38cfef5">
tools/loaders/sharq/fastq_writer.hpp
</a>
</li>
<li class="file-stats">
<a href="#32b44cf980dfdfb3af5fcc3edf455534dab5b222">
tools/loaders/sharq/hashing.hpp
</a>
</li>
<li class="file-stats">
<a href="#cf0068b3b0ab6ead974c4f391e1a44649567ea89">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#361b6909c3a590a09025537bb5aa1db50baa2eed">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/async.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#9090045bdd674cd17678be2dd8e38459bf071bc7">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/async_logger-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1b3c7747bc0c94b28fe30d54bcc04500e056faa1">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/common-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#0884c1ac2d6fdc22daf22f70317755b18234c4ba">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/common.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#f8e535d5a5d79b7d99bca620374a83060a6a9f0d">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/file_helper-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#01bba6eaa5fdc0afa6a0d7788c73bcb70779fb05">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/file_helper.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#92b291efd6d54c0f87c9b7f35dafad6903e9fe48">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/fmt_helper.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#6600d7fb0d117170c035f936d3c62bc1856ad5f0">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/mpmc_blocking_q.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#397baeb82a75af1d4a5ed2e982cb0c9ab9ca08e3">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/null_mutex.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#281c09804c5a60c5dd41bbeb50eca524d9574309">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/os-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8b748e0e3dbffe0d40ecc0789a5797543825950c">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/os.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4851021407aec87e26dc7ca5dbfa4c0abee0314a">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/registry.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3138289ff4ef74278733657be81b30771185acc0">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/tcp_client-windows.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c757b0e6d104b38ca158b14433965cb49b917f1">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/tcp_client.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4e10756fd674982e648e229bf60ea02f4d8dddc2">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/thread_pool-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#c2d82cacba8c572a38132b3fb7ad3c633ab2a16c">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/thread_pool.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#59b22b133c702cb739da0a776a89880f6dd900db">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/udp_client-windows.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#af1275fb1774d9542a2dbf7090e0b3f1b4a10d23">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/details/udp_client.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#34ccfeba7ae764ed4c78d16a76d1ad157835c34f">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bin_to_hex.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#2b0264c8b22bbdf38ce960455df2835eed6b9ad2">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/chrono.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4898ef355024d4bf32a7ff0f4e7c9c3767508206">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/color.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e7e56ae65879c950a4584c40236fcb8fe7664851">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/format.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1ff80b5ca7a3d724def3da833cadba55b8001b3a">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/os.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#b04635734079c87dc7112af97cf00c9ad677fb14">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/ostream.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#eb8f3379cec6f2aeeb61c9efbc294a0aa55e27df">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/printf.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#fa1072f6261e88f157b603a072891adfa1d52572">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/bundled/xchar.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#75c4b9e8d236662d3afb9fee7b49a2dd6a615623">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/chrono.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8271fbb8fa5d0f90cbffc75ecc17e6a935c680e0">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/compile.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#b76b5836213c315082d301ae11fdbf63a2925c1c">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/fmt.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#cedc7ba20ba0550777ba51c019c61f32ce2df03e">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fmt/xchar.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6859a2f3604ffd40f221111bed3d6f8c24cedc5">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/fwd.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#b41daa0a45aa6036cf9eb4abf93b34282c5ac605">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/logger-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#13c2dc95c96c67117d51f5e4197af0b5fbff9498">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/logger.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#57c9017cdc50127651017f9b23f25831fc980f70">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/pattern_formatter-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4eb36ec5b4b4aef1217a0319d6be100f48a35ab7">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/base_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d6b29ae8320a65a86d99b18e40664ff16719f401">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/basic_file_sink-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#c3630a73c04e3f95f9b28b2de694b7f6e53c7f74">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/daily_file_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#2f5e97f04a2bfb99dbfc3a0e4b7a1dce7797f08b">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/dup_filter_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a5b74ce225e3ecb831426800d48d6aecc8ddea0">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/hourly_file_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#a1afb34bcf0ffa0070bf8cf56b0d752dd7a2bcf0">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/mongo_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#d3fb5008fc8572e4e0b24ae58369c8cf055cc286">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/msvc_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#eb48386ebfc2173418bd7cf75c001a8c8e845169">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/qt_sinks.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#771a810c64a8679d597f19fdf71a63f290fccccd">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/rotating_file_sink-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#f10d7298afc937ce7939d2225d3278cef4c39343">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/rotating_file_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#34c8e2b006a7bff52ca3003014c20b5b9ba5c2b4">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/stdout_sinks-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#c7d5d2504523bf7c4aee4ba06a0b91e210fe2336">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/udp_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#24ac7134c8736275ac33e109c16ef51452ddc073">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/sinks/win_eventlog_sink.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#8d5d86020368b37746058a94b4944bc6739c7c6a">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/spdlog-inl.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#96071a14a107d5ce29f9e3aa217f951fc4eb3f4b">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/spdlog.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#4738caaee416261fb26dfd75ab9192878d8f58b9">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/stopwatch.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#73a9c18a8672d500cfbf8c2c13f07b49fbb5dc6e">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/tweakme.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#da20901a9a64a87c8f7ab252277e07e02aff6f1c">
<span class="deleted-file">
−
tools/loaders/sharq/spdlog/version.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#3e455c5d614c24033c36296ebd975049c9e0cf30">
tools/loaders/sharq/sra-tools/writer.hpp
</a>
</li>
<li class="file-stats">
<a href="#a3890bb36904cef8194468bddc1d746f72bf1d1f">
tools/loaders/sharq/version.h
</a>
</li>
<li class="file-stats">
<a href="#cda627d49fc0717451afdc7de300b2ee05760005">
tools/loaders/sra-load/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#955c7ee2ce7961f4983d10a8c3745ef73fca6def">
tools/test-tools/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#fffb0eb17b6d357a144fc49b00134bccd758d36c">
tools/test-tools/pileup-stats/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#295cebb8bfce958f9ff8b2dbdc79dcee159f4dbb">
tools/test-tools/pileup-stats/test/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#f50ccbbe3e4cb6c17f8554681f8a794930b11f4e">
tools/test-tools/qa-stats/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#4a4e0d645f1046c49b1e2d29edbdf91474ca4592">
tools/test-tools/qa-stats/README.md
</a>
</li>
<li class="file-stats">
<a href="#5aff3621899d4e5f8052aa4840c4307e833e6f68">
<span class="deleted-file">
−
tools/test-tools/qa-stats/hashing.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#961e27a4b044536dd6f40d56befd030b9e53197b">
tools/test-tools/qa-stats/input.cpp
</a>
</li>
<li class="file-stats">
<a href="#60009cf3f6fc100736069f599b1725516536058d">
tools/test-tools/qa-stats/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#953e2c6c6dfea8bd8ac3d68f363be091cc2beeef">
<span class="deleted-file">
−
tools/test-tools/qa-stats/output.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4dc598d24101927f51cd5573169cadfddbee760b">
<span class="new-file">
+
tools/test-tools/qa-stats/stats.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#efbeb8ac932bdc1a1267cac87fb9c4565ebf78c7">
<span class="new-file">
+
tools/test-tools/rnd2sra/CMakeLists.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#563dca5f7a7cd430beb4aa6c426d3efbba1712d7">
<span class="new-file">
+
tools/test-tools/rnd2sra/README.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d2cfc359568926be22ab98b63a2418917432b7f">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/csra.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#19094999d4bc334fcd6c7efe77ea7eb04592f445">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/csra_1rd.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#7dd6fc194a02ae46a6fb68300abadddccc5a7227">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/csra_cmp.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#09a3e53d27ea5988924c1db6707d38f006ad90d0">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/csra_large.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#0dd3c63449b96186b5077638221666977457b4ac">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/db_large_reads.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#64f4a2b85f3eb04c55f76c1868d017b49bd7abce">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/db_with_name.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#94825a5ad75f40e153f5717bf33e2bdea2d88909">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/db_without_name.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#cfd83ad788e1bd9e19a8261fdf8f5149005a688d">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/flat_large_reads.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#9231a07bd6259af17c13697a2dabcc7a89ca24e2">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/flat_with_name.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ee933571e208895894fb45394745bfdf972f1fd">
<span class="new-file">
+
tools/test-tools/rnd2sra/examples/flat_without_name.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#016d25d834a03017e659fd2d9a76d3b7ef3a4013">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/RdFilter.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#2724db8d19ea1aa7557e0f87dba21b031ccaf7c5">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/bio_or_tech.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#9d67af8e087d4f03588ff8705bf7c071427af85d">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/csra_prim_cols.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#06f2cfd246a27bf941aa617645c7d4e53345b251">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/csra_read.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#80aa52e8b69ba8c758b1983ba79f3ad0207608e9">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/csra_seq_cols.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ebaaa7521631d662cdf129495f305536880204a">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/csra_seq_rec.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4b0e10078070812490e66d7bfdc78a3fcbdad71d">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/csra_spot.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#b55ab4df0116e5092fad1634a13fd34b0e5d84d6">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/csra_spot_list.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#0b33d141d74fe00c43da1ce2802784cda163649e">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/fwd_or_rev.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#cbff910cfa1a6b4d31811e1998845af7c54a1ec0">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/main_params.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#e853cb26cc492624641260410a0b54760d229762">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/normalizer.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#b1e871aa50d793197dddc51c78f148e3915ba119">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/product.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#92e89b9fb10486b8e637c703d8e3c5cb3df8a6b0">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/rnd2sra.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#d5df0db6d3504fc10a91ad1af725ef8fbd3a2f24">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/rnd2sra_ini.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4da5be8ae35f653f4b03b02f57b184a9dd1f7dd8">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/rnd2sra_main.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4e173dff796bd71c93048e77bde8ae1a6a0082dd">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/rnd_cmn.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#6e4860788d8cdf3cd1e349c79d76e95029e8bbbb">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/rnd_csra.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#a1d266ebc419afe08e2a4f563d1c66e8f4900739">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/rnd_none_csra.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#7299e56dec1c2c8925a539269a7561e84582f607">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/run.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#0424723f089017d9aa9afe37bec233b5202fbeef">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/runner.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4cf823dc80a05e4d0d4de73df47010a558932e8d">
<span class="new-file">
+
tools/test-tools/rnd2sra/src/runner_ini.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#08948661df821789e69f89106ae56f11f29e7efe">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/batch.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#fe4e7086dc61f5af4f62ebbf1a2aa5892d1c6099">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/errors.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#a253339f1178c44f453a541c8e0f6f01997024e8">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/exec.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#49d433a3e31dc1d6a4c8f58fe485f51768929f56">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/fd_reader.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4db9a0e8c7f511dbfab4cfed481ec44c2bab161e">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/file_deleter.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#872ebc6044bc8a6353ba5ea0d83c370745ebc8ff">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/file_diff.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#5921f092a623deb08640aabcf09cd93e7315bad6">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/file_rename.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#c81ff0c5a51836029ac4dd34f318710abe4816b6">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/file_report.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f9b937e29e454401da138c08865e9d4431b89acb">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/file_tool.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#2c3eaba3600b27fc8935d281332507303fc7a61a">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/ini.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#86b54fee02249b6df306838a558ac82dec3fa52c">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/log.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#e66111633b5e3cd3ecc368b8c80113bb2eef5e32">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/process.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#e1c3c12369dd875b9d22d6e3cbcc4610088aee0c">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/random_toolbox.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#18537c9b9006764c98dea0c2197a812bfd336e2f">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/str_tools.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#66c44eae4c0d589c8532a8eb5d087eeb875fc881">
<span class="new-file">
+
tools/test-tools/rnd2sra/util/values.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f60159cd952290ccbdacbdbf5b1b3d0490ea269a">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/KConfig.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#5031e62c3d16a0efd9dcc0fae2240853a98ea43c">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/KDir.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#dfe15f33b7d772ef15d32a8c376cda500395fd3e">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/MetaData.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#32ac32837eda8fad7bee75679b7c23e0e87e4101">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/NameList.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#6220e5e8b2c95a47096a4d1b6de2c691f9a1cdb1">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/Resolver.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#65ce34fac229230fc6d1630270e6178e3c38ddfb">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/RowRange.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#83b6d94da79030d9f98b1566e42c08d982e37132">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VCursor.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#7a3e706667c11fc86451ede912c6d4b2bc360502">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VFS.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#08d81d95c8912b89f1103bb7698f55a5e1f30429">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VSchema.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ad3affc6af23fc710f09f73cd1f612a7ab8b229">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbColumn.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb4d06c80f8b87428d6c298760db1a0145e4caf2">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbDatabase.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#d46061e61957111ce916924b36181a794292a2bb">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbMgr.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#12767360019a02631176db3a3e02efdf89fc445b">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbObj.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#909246344f15f9cf787cefb5e8807a0f979e7c03">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbProc.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#4daaa7697d815a65abcb3d31a6596363106d0ced">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbString.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#08e93e2f72c3b5c63e5999586174664d930bd745">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/VdbTable.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#f92dc755fdacd332f19a578d7b5361fcadb5ec1d">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/checksum.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#8336407f2b8c32c8f81b09788fd64c27858accb9">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/kapp.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#df94996d81a422c4bc515d73bfcabd7b5403df80">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/vdb.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#ad968269c722e8e358c3e1969f99584bfa77d824">
<span class="new-file">
+
tools/test-tools/rnd2sra/vdb/wvdb.hpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#a08f84d47cf34ac031ade5eb1d9700ff3a749a65">
tools/test-tools/sam-analyze/args.hpp
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">
—
<br>
<a href="https://salsa.debian.org/med-team/sra-sdk/-/commit/c6a3fefad7f327dfc8759be316c5d7f51558d14e">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/sra-sdk/-/commit/c6a3fefad7f327dfc8759be316c5d7f51558d14e"}}</script>
</p>
</div>
</body>
</html>