<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/macsyfinder">Debian Med / macsyfinder</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/macsyfinder/-/commit/6d984f325c9580af3b57279ec1e98a506090f228">6d984f32</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-08-23T14:09:25+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.1.5</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
174 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#b8baf23d7ed7f2b79b86aeb041867428fb196428">
.github/PULL_REQUEST_TEMPLATE.md
</a>
</li>
<li class="file-stats">
<a href="#3846a50a773557bbc6b62bb9a9ef8b8c30af4c8e">
.github/workflows/ruff.yml
</a>
</li>
<li class="file-stats">
<a href="#ce75854ec9a744f62faf4ef473f64a99029ae864">
.github/workflows/testing.yml
</a>
</li>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#6081e135ffefcee5d837639934dfc501b9b20fe6">
.gitlab/issue_templates/Enhancement

.gitlab/issue_templates/Enhancement.md
</a>
</li>
<li class="file-stats">
<a href="#8b28ba38a2c1b980c9846458130ebd674aea62fa">
.readthedocs.yaml
</a>
</li>
<li class="file-stats">
<a href="#419d52dcfa39c76bbf72833eb6f5f7152f6ec661">
CONTRIBUTORS.md
</a>
</li>
<li class="file-stats">
<a href="#e352fc138c5e488dc34254c3ee2e99e3e9aaf288">
COPYRIGHT
</a>
</li>
<li class="file-stats">
<a href="#a982ffec840a2a1e8ab99944e49f640e7d27cc5d">
Docker/Macsyfinder/Dockerfile.2.1.4
</a>
</li>
<li class="file-stats">
<a href="#94a50102720953356b9004c467f45fa44d9397e0">
macsypy/error.py

Docker/Macsyfinder/Dockerfile.2.1.5
</a>
</li>
<li class="file-stats">
<a href="#4912539cfe04e954f3e032318e9ed181e19d2fc8">
Docker/Macsyfinder/macsyfinder-entrypoint.sh
</a>
</li>
<li class="file-stats">
<a href="#87b30525c48ce13c782cf742163d17e347d542bf">
Docker/coverage/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#8ca8894c9aed8564142f753fdc3d43b313a19e19">
codemeta.json
</a>
</li>
<li class="file-stats">
<a href="#7961cbb315ea52062efb3baf2ab81790857e0448">
<span class="new-file">
+
doc/source/_static/github-banner.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#5703a8851d819c7dcaaadfaf589b7cb80ca651ab">
<span class="deleted-file">

doc/source/_static/macsyfinder_classes.pdf
</span>
</a>
</li>
<li class="file-stats">
<a href="#e78c9b5743e20b77839faf3b953a28ebd9a3a012">
<span class="deleted-file">

doc/source/_static/macsyfinder_classes.svg
</span>
</a>
</li>
<li class="file-stats">
<a href="#875e40b042f191f13af8a873862db71225028c51">
doc/source/_templates/layout.html
</a>
</li>
<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
</a>
</li>
<li class="file-stats">
<a href="#42756d51e1919fccbce3e3db0b1975a1b8d81db4">
<span class="deleted-file">

doc/source/developer_guide/api/cluster.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#5a5368a13f4cf8663d7aa769d0421a8a412ff38b">
<span class="deleted-file">

doc/source/developer_guide/api/config.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#131f9bab16ce0829423ca6202893be5e90489828">
<span class="deleted-file">

doc/source/developer_guide/api/database.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#aa1e8b40047646c1b9e41df547d67a4b2ed9c90c">
<span class="deleted-file">

doc/source/developer_guide/api/definition_parser.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#e70e77ce39090ec8b35bc13c9a90d6290a3158b0">
<span class="deleted-file">

doc/source/developer_guide/api/error.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#7277b36c17b55a584f6b7138e6d2064b7ca02427">
<span class="deleted-file">

doc/source/developer_guide/api/gene.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#de6f7b8a7466effd66a37cb628892d4ba59bfb53">
<span class="deleted-file">

doc/source/developer_guide/api/hit.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#97628abef6fc631aa500b62f38606853a4048e74">
doc/source/developer_guide/api/index.rst
</a>
</li>
<li class="file-stats">
<a href="#28390da64a8ea6086ddf7166a602c017a2a8256e">
<span class="new-file">
+
doc/source/developer_guide/api/io.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#05cf1dc889972483b8ca1800336438aa805d638b">
<span class="deleted-file">

doc/source/developer_guide/api/model.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ce580d8b6109fb7eddf76a033a95de831f4b0b1">
<span class="deleted-file">

doc/source/developer_guide/api/model_conf_parser.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#10c1054751fa645251ee9644002ca1c21a6ed002">
<span class="deleted-file">

doc/source/developer_guide/api/package.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#03a9042ee64eaf05a8803aec89cf7b27f58f0fc8">
<span class="deleted-file">

doc/source/developer_guide/api/profile.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#8074b95599737835960fa37cc6851fa01d4e64e5">
<span class="deleted-file">

doc/source/developer_guide/api/registries.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#d4f3dbdccee0fe3e20220c932444a5102237eddb">
<span class="deleted-file">

doc/source/developer_guide/api/report.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#e686c44552834d1ab5b8d8d55d7177c9f52f06c3">
doc/source/developer_guide/api/scripts.rst
</a>
</li>
<li class="file-stats">
<a href="#cea811f701cf833a8d3f8110e647ad8ba94e168e">
<span class="deleted-file">

doc/source/developer_guide/api/search_genes.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#a95d3c54480a0ff3fe7f8cfebf9e177883f6f325">
<span class="deleted-file">

doc/source/developer_guide/api/serialization.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#1b8fe4b001c2d8ff46b460a8e639509a3ae8f883">
<span class="deleted-file">

doc/source/developer_guide/api/solution.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#73707846c209a78779b3f88573c0ce0e6fc0c8db">
<span class="deleted-file">

doc/source/developer_guide/api/system.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#95205a04fec05ef2a0a62cef89197e0b3f50e610">
<span class="deleted-file">

doc/source/developer_guide/api/utils.rst
</span>
</a>
</li>
<li class="file-stats">
<a href="#a91aab8852e3a0f6ad882c4ec54c14cbc4763dfd">
doc/source/developer_guide/index.rst
</a>
</li>
<li class="file-stats">
<a href="#58e01521459ffb3f12d20b9a3ec5fb852db4462c">
doc/source/developer_guide/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#c0dec5ba0511b35d99c489cf54ac02840afe51c5">
doc/source/developer_guide/overview.rst
</a>
</li>
<li class="file-stats">
<a href="#40ab2307cc3e5eb970b3a70221d81e7e45f4562f">
doc/source/index.rst
</a>
</li>
<li class="file-stats">
<a href="#588fa84af1036558dab6dea7224f0acdfefab018">
doc/source/modeler_guide/FAQ_modeler.rst
</a>
</li>
<li class="file-stats">
<a href="#4fa14baa99368c17923e787051eee475dd172d20">
doc/source/modeler_guide/gallery.rst
</a>
</li>
<li class="file-stats">
<a href="#c073420657b35298d71d06a9224f11ae9503d212">
doc/source/modeler_guide/helper_tools.rst
</a>
</li>
<li class="file-stats">
<a href="#aac64407792d51db2d602c0ae0745ab1c075f250">
doc/source/modeler_guide/index.rst
</a>
</li>
<li class="file-stats">
<a href="#e99631d2905c88aaa01f99a1d5707d16a4f854df">
doc/source/modeler_guide/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#68b718df468222fa978bd6704f137e3a9f7c15ba">
doc/source/modeler_guide/modeling.rst
</a>
</li>
<li class="file-stats">
<a href="#fd5c025c929ac77b85dca830db45c607c79da622">
doc/source/modeler_guide/models_V1ToV2.rst
</a>
</li>
<li class="file-stats">
<a href="#5fe7e18c5a8ad3b411c3a20d751cda671af551b8">
doc/source/modeler_guide/package.rst
</a>
</li>
<li class="file-stats">
<a href="#99fb7e5c060acf8e74a9fdfab98da2b59812e6ec">
doc/source/modeler_guide/publish_package.rst
</a>
</li>
<li class="file-stats">
<a href="#c06c581601f29d9a251206ddaeb028d293c05ee4">
doc/source/user_guide/FAQ.rst
</a>
</li>
<li class="file-stats">
<a href="#053efa40eb8b8a96e5423114151703ce3c037461">
doc/source/user_guide/big_data.rst
</a>
</li>
<li class="file-stats">
<a href="#d181db9d65b418425b08a0a31ea01d7555c4d3f1">
doc/source/user_guide/functioning.rst
</a>
</li>
<li class="file-stats">
<a href="#a8a5bbe2d3142fa889d0f088099f8e0b3cb4cd6a">
doc/source/user_guide/gembase_convention.rst
</a>
</li>
<li class="file-stats">
<a href="#3ae08177f23e529408fa29bd17143327fcf3f008">
doc/source/user_guide/index.rst
</a>
</li>
<li class="file-stats">
<a href="#885a57142051ed7f5891824f47a5c8fa85c691f8">
doc/source/user_guide/input.rst
</a>
</li>
<li class="file-stats">
<a href="#c88a6493164307e30601792aba3e210586e1a4b8">
doc/source/user_guide/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#e64bb5a43af70ca8f36e66764f1c7b4787a9109e">
doc/source/user_guide/model_definition.rst
</a>
</li>
<li class="file-stats">
<a href="#49c54d1ce0f523461948decb7e1e5710dd0d92c7">
doc/source/user_guide/new_v2.rst
</a>
</li>
<li class="file-stats">
<a href="#d31b6cc19921c967add19dc6c73e59fa47cc40de">
doc/source/user_guide/outputs.rst
</a>
</li>
<li class="file-stats">
<a href="#0bda417ce1013d7cc7da3dda2ad5c982097ef9f2">
doc/source/user_guide/quickstart.rst
</a>
</li>
<li class="file-stats">
<a href="#3d3ebd4c6628aa44680968a58ffc320cc05cf17b">
<span class="deleted-file">

macsypy/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a7f8d83e823da3f05a93afbeb5d860f9ff27446">
<span class="deleted-file">

macsypy/cluster.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#49a156fe7fbc4a37e3a75f4faf8eacd2b996612d">
<span class="deleted-file">

macsypy/config.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#837c49949237586e1e5d4dcf08d1fdc57a30c892">
<span class="deleted-file">

macsypy/data/pre-push
</span>
</a>
</li>
<li class="file-stats">
<a href="#4dd9bcfa97420e97966431702e6dc5dbc7ddef05">
<span class="deleted-file">

macsypy/database.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#c469d998735247ac83a653b65234fdaca07a530d">
<span class="deleted-file">

macsypy/definition_parser.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#d176d3e46c7fc777127ae9ede3033204c7469744">
<span class="deleted-file">

macsypy/gene.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a3144e7a7f49742943a3b628c1b9762df0c0969">
<span class="deleted-file">

macsypy/hit.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#4c17b735ecd3e8dd93495a3b737554ce53ba3078">
<span class="deleted-file">

macsypy/metadata.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#87c6b7d901288c8b7ec90beb0e08b20028ab3756">
<span class="deleted-file">

macsypy/model.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#184a9257ca110b579c6c9bc5b2b002746e6edfc8">
<span class="deleted-file">

macsypy/model_conf_parser.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#634a4205bd82feb10592baabc8d257648734ced7">
<span class="deleted-file">

macsypy/package.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3a3deac480895de233bef0e5778f3bb5ca7eec62">
<span class="deleted-file">

macsypy/profile.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#554853b37712d66499bb2359a1888cd930d734d9">
<span class="deleted-file">

macsypy/registries.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#b1b3a9db68339cb55cf02e8ca9e10be64d6b713f">
<span class="deleted-file">

macsypy/report.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#ca695e1b4453bb02ad272cf327edcfc45001387d">
<span class="deleted-file">

macsypy/scripts/macsydata.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#143a218bb1da21586db03dd15ce767994ee227da">
<span class="deleted-file">

macsypy/scripts/macsyprofile.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3d9001ce92d2fc6ed033309018bcbe646e0ced04">
<span class="deleted-file">

macsypy/search_genes.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e10dbdc7b621cf1435879f77f2636fa60939a32a">
<span class="deleted-file">

macsypy/serialization.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#1eb2637ab3f0d03ef583c503c18e827b60b84da4">
<span class="deleted-file">

macsypy/solution.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb5251a2c4b6ace9e3fb5fe9dda31f84e1cfad71">
<span class="deleted-file">

macsypy/system.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#af701c065cb2a429c0893405ee9bcd4da0f66ef3">
<span class="deleted-file">

macsypy/utils.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#183306ea9b8e66da1784ea513a70a541f0a41aff">
nextflow.config
</a>
</li>
<li class="file-stats">
<a href="#2c112a0a5dec632d93c45afb6bc215bc66b66d01">
parallel_macsyfinder.nf
</a>
</li>
<li class="file-stats">
<a href="#5d07e7d72637aa0d59c89d381fe6dc4cf46e2491">
pyproject.toml
</a>
</li>
<li class="file-stats">
<a href="#8c91c0296909b5ea3c496fde69e9dc44a6c6ae5f">
<span class="deleted-file">

setup.cfg
</span>
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#0711abb27931cdb86d962c06c7304ab683f1dbf5">
<span class="new-file">
+
src/macsyfinder/__init__.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#2e501efda2b16e1b66bfc5396309c4525ca8ae0d">
macsypy/licenses.py

src/macsyfinder/io.py
</a>
</li>
<li class="file-stats">
<a href="#8f898277320ad971b994c240681306dc04c38817">
macsypy/scripts/__init__.py

src/macsyfinder/scripts/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#a78f376ada87eff5de754bd4a915882102c4c40a">
macsypy/scripts/macsy_gembase_split.py

src/macsyfinder/scripts/macsy_gembase_split.py
</a>
</li>
<li class="file-stats">
<a href="#9970b96750b7540df462ef37397f6d0245bee98d">
macsypy/scripts/macsy_merge_results.py

src/macsyfinder/scripts/macsy_merge_results.py
</a>
</li>
<li class="file-stats">
<a href="#e6c9e0403e489fbfeef2cc8b72e2a03090bff888">
macsypy/scripts/macsyconfig.py

src/macsyfinder/scripts/macsyconfig.py
</a>
</li>
<li class="file-stats">
<a href="#103f42d5700a9620a4e3ef27fce0594514ff2dd2">
tests/test_ProfileFactory.py

src/macsyfinder/scripts/macsydata.py
</a>
</li>
<li class="file-stats">
<a href="#a167f50c460c68002e024f6de37ea90da664b0d3">
tests/test_ModelBank.py

src/macsyfinder/scripts/macsyprofile.py
</a>
</li>
<li class="file-stats">
<a href="#cb4b46ccb2288e0064bc6ee0b67d56aaddf8a3d7">
macsypy/scripts/macsyfinder.py

src/macsyfinder/scripts/msf.py
</a>
</li>
<li class="file-stats">
<a href="#8e911f6351f3fa0cd30fc10a701473fbb56707e6">
tests/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#6a1d906c0ac8a2ff2bf8557840e5a177f69a5848">
<span class="deleted-file">

tests/data/conf_files/macsy_models.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#4d43483dbcb969e2c84d4c3e5ab00fe19f6c20f5">
<span class="deleted-file">

tests/data/conf_files/macsy_test_bad_conf.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#22b0302cd455ad1c8520996bc405c7f05237a693">
<span class="deleted-file">

tests/data/conf_files/macsy_test_conf.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#e47729bda6202efb0942b595cf7d14f821c70d98">
<span class="deleted-file">

tests/data/conf_files/macsy_virtualenv_test.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#c6afcd79f2959011a7624d38f384f9f6bfb795fa">
<span class="deleted-file">

tests/data/conf_files/macsyfinder-old.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d862c7c4f004ec9fb6fc189e79eb29612096477">
<span class="deleted-file">

tests/data/conf_files/model_conf.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6305690909093a135925e2aa35e07e1e518bcdba">
<span class="deleted-file">

tests/data/conf_files/model_conf_wo_filtering.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#31103ab9fc9bde253423828e34ebdbf921107fd3">
<span class="deleted-file">

tests/data/conf_files/model_conf_wo_weights.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#274a600a4e622d4863a285fb361aab2bfa6ea902">
<span class="deleted-file">

tests/data/conf_files/project.conf
</span>
</a>
</li>
<li class="file-stats">
<a href="#66909750a81ebe4227c95720f5c3bc6cda734c3e">
tests/data/functional_test_unordered/all_systems.tsv
</a>
</li>
<li class="file-stats">
<a href="#54e71fc8ef81003e330c3ddb3b3b139cd81f3f9c">
<span class="new-file">
+
tests/data/hmm/old_profile.hmm
</span>
</a>
</li>
<li class="file-stats">
<a href="#826f03849f17464d5e06d8bb09edf3df8fa41da6">
<span class="new-file">
+
tests/data/hmm/one_profile.hmm
</span>
</a>
</li>
<li class="file-stats">
<a href="#8d375cb24a91fcd0365da28b64329b89dcb01fef">
<span class="new-file">
+
tests/data/hmm/several_profiles.hmm
</span>
</a>
</li>
<li class="file-stats">
<a href="#1d1c287ebce956a040b02632f89eb2c95d6952c5">
tests/data/conf_files/macsyfinder_default.conf

tests/data/macsyfinder_default.conf
</a>
</li>
<li class="file-stats">
<a href="#9e0ba69edfe98b0548a8abe25bfbae7e09112d6f">
<span class="deleted-file">

tests/data/minimal_pack/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#f78a01b8095fad64f5d545e93d0596d6d0cb0930">
<span class="deleted-file">

tests/data/minimal_pack/definitions/model_example.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#9df21c7deaba5c97e585c4c3d353e1aec733489d">
<span class="deleted-file">

tests/data/minimal_pack/metadata.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#b98c29050667aca351fe276a50bdb6230ba0f32b">
<span class="deleted-file">

tests/data/minimal_pack/model_conf.xml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c48820d58080e9b538e7876966319331ec12ba0">
<span class="deleted-file">

tests/data/pack_metadata/bad_metadata.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#31478b165182b64a8d82f9219068c2af3536cbc8">
<span class="deleted-file">

tests/data/pack_metadata/good_metadata.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#c77ea58b9ebc2fb6c91e3fe43b1bd44fb03570f6">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_cite.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#4c0fe68f4372c7bf66f0c8e4f9da13666d482411">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_copyright.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#cf16ec27430d68c691216c9393916809d9b31334">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_desc.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#23837896e8cafdebf03401c6081f995ac6d1c520">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_doc.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#94c655126aa68e9fcd191f7201b33118ea85dace">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_email.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#73b63b74bca4fccfb7a8090ce915e7fa5de9129f">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_license.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#35e9236683d2207ff8b6990415b45090e5a535a8">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_maintainer.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dd25731b787c4b22f5b94356a7718106b6bbe9f0">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_name.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#b75c154a31a0b544fe027933e5d8867c7d78d972">
<span class="deleted-file">

tests/data/pack_metadata/metadata_no_vers.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#141fbfe8cbb6163b3cf6e4d3e8fb8dc99efeb4c2">
<span class="deleted-file">

tests/data/pack_metadata/metadata_poor_quality.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#b6326305788db2cdbbe9491c0955d0ba1d7128af">
<span class="deleted-file">

tests/data/results_macsyprofile.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#533d06e98edc7e2a6c7dd28a8c235669734c3c8d">
<span class="deleted-file">

tests/data/results_macsyprofile_best_score.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#5e2c8c0c23d54a11c28f91fe20d91fa1f7d79585">
<span class="deleted-file">

tests/data/results_macsyprofile_coverage.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#fd398812207d627ffb60a907b720d8500a6b8c2c">
<span class="deleted-file">

tests/data/results_macsyprofile_evalue.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#cace0442546fac2adf5899722fbf8b5d1423e911">
<span class="deleted-file">

tests/data/results_macsyprofile_no_hits.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#200859a7508d471f253b2a1d4847f875f49ba05d">
<span class="deleted-file">

tests/data/results_macsyprofile_pattern.tsv
</span>
</a>
</li>
<li class="file-stats">
<a href="#94f9d3db8d52e3420a88e9a9abc44fbe506572be">
<span class="deleted-file">

tests/run_tests.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#14a9293515bd836cb0d2aa0d188818c906dd9a58">
<span class="deleted-file">

tests/test_Config.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#4ba8c641100fc955066f316bf9fde6d291bd956f">
<span class="deleted-file">

tests/test_DefinitionParser.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c76187bc1a48e37f5c5aeaa5670b4a1379c3b86">
<span class="deleted-file">

tests/test_Exchangeable.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#1453790f417b94e6c748e631f263bd01659de463">
<span class="deleted-file">

tests/test_GeneBank.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#efda20812be90f7c1962f6f6b3d4ef0cfdd6fd6f">
<span class="deleted-file">

tests/test_Indexes.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#c047960aa2401e45cf0949d12b3a1bbd4c3bb160">
<span class="deleted-file">

tests/test_LikelySystem.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6fd98efe8707dc2a674ffc4ead7eb250117c9a9">
<span class="deleted-file">

tests/test_MacsyDefaults.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#42a674d819006dc6e2728fbc69b6e45e1e2b484b">
<span class="deleted-file">

tests/test_MatchMaker.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#47a62e1eece8f2bc902e5ccff4090e7d48ee2338">
<span class="deleted-file">

tests/test_Model.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#61da325329a9327b56bbe02583c05caa922fc633">
<span class="deleted-file">

tests/test_Profile.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#cd1f982b25028907664e8a94ac7eaf161385d18c">
<span class="deleted-file">

tests/test_RejectedCandiate.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#413392ba072389b1a336b560104312b8f168b9e8">
<span class="deleted-file">

tests/test_RepliconDB.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f6db2af397c033a5f40d558bb56b2fe837dc96c4">
<span class="deleted-file">

tests/test_Report.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e6b38bf5b15c1349132bf1f676177e0cd85d9401">
<span class="deleted-file">

tests/test_System.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e45bdbe328111dee86bd3c6f0e81704414d0399c">
<span class="deleted-file">

tests/test_cluster.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#8b2170032364fa713b3fda5b8d59f380baca4f25">
tests/test_functional_test.py
</a>
</li>
<li class="file-stats">
<a href="#d7bfdc84b8512fb3c84aa4596549f56a22c9c644">
<span class="deleted-file">

tests/test_gene.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#81e5603ac0c797bed219ab00fe1a97ab0c853d48">
<span class="deleted-file">

tests/test_hit.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b2ab2a98e32fd00ffe974c417898c8a992ce396">
<span class="new-file">
+
tests/test_io.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#46afee876fbc0f2e64c175fc4aeed939fa3c6039">
tests/test_macsy_gembase_split.py
</a>
</li>
<li class="file-stats">
<a href="#8708feb512890a3a4b1299d1283207dafb796fdd">
tests/test_macsy_merge_results.py
</a>
</li>
<li class="file-stats">
<a href="#97345dd9f8c3895dbefe0ead8d432a199c727f04">
tests/test_macsyconfig.py
</a>
</li>
<li class="file-stats">
<a href="#514fc11536ba45ae5589db3112d577af83d51384">
<span class="deleted-file">

tests/test_macsydata.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#dd3b514f3525936df49b955b011a4eb53a42e79f">
tests/test_macsyfinder.py
</a>
</li>
<li class="file-stats">
<a href="#e6443a1d814794bd9008b30d8607116104e9e123">
<span class="deleted-file">

tests/test_macsyprofile.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e43c616605741b2968eb2a4aea319846f1968885">
<span class="deleted-file">

tests/test_metadata.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f8c0ca222258a61637fc21c6d60fefbc763e749d">
<span class="deleted-file">

tests/test_model_conf_parser.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#f16fe34b1233e41b27ec90fd01f91ddd856c059a">
<span class="deleted-file">

tests/test_package.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#05b1a1059239dbf665720599a97b84e5382bd4bd">
<span class="deleted-file">

tests/test_registries.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#974d8e21b6f3368d487f14e219ce372f6bebdb7b">
tests/test_macsypy.py

tests/test_scripts.py
</a>
</li>
<li class="file-stats">
<a href="#5d2e303c4b57ee9c13ed20a3218639b8ff643edf">
<span class="deleted-file">

tests/test_search_genes.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#10c716264fe0bd5ff6ade60833dc6dd80acdc47b">
<span class="deleted-file">

tests/test_serialization.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#b10a5a974ae36b53dbef218d6f2f2080e86a47f2">
<span class="deleted-file">

tests/test_solution.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#dc10ba1af84013a385b35192d66ceb8036cefb1d">
<span class="deleted-file">

tests/test_utils.py
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">

<br>
<a href="https://salsa.debian.org/med-team/macsyfinder/-/commit/6d984f325c9580af3b57279ec1e98a506090f228">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/macsyfinder/-/commit/6d984f325c9580af3b57279ec1e98a506090f228"}}</script>


</p>
</div>
</body>
</html>