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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Charles Plessy pushed to branch master at <a href="https://salsa.debian.org/med-team/prank">Debian Med / prank</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/prank/-/commit/4c1744d0d4f46f9bdbaa08840c492ffeabb1e794">4c1744d0</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-09-05T10:10:04+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 170703</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/prank/-/commit/3c847a72f0d0e569e039c35e97047abcead419b6">3c847a72</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-09-05T10:10:05+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/170703'
Update to upstream version '170703'
with Debian dir 9b881b85b252702bbacd1a6b05860d80a98dcbcc</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/prank/-/commit/90e0750d806013ef7a53763d807135cc6ba1d6bb">90e0750d</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-09-05T10:12:37+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Re-add the file by hand.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/prank/-/commit/8d9a45027d591eebd660bc750c979f8c06b51590">8d9a4502</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-09-05T10:21:53+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update FSF contact address in debian/copyright
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/prank/-/commit/da5c20fb87cc06fd3bde7f7990c50a065a95e030">da5c20fb</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-09-05T11:03:39+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refresh Makefile patches and merge them.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/prank/-/commit/49ce423639553a08a0a3275e7d558b8c9def1b11">49ce4236</a></strong>
<div>
<span> by Charles Plessy </span> <i> at 2025-09-05T11:05:24+09:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Upstream does not shop a Makefile.qt anymore
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
35 changed files:
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<li class="file-stats">
<a href="#0cd76db0bc8af47bb460c16e01498a05378dfffe">
VERSION_HISTORY
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<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
<span class="deleted-file">
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debian/README.source
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<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#f6361e25b2927c77444e8b661a216d7f56f9d1f8">
debian/patches/hardening.patch
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debian/patches/Makefile.patch
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<li class="file-stats">
<a href="#915053454bf6d33e9e070f0960ee61792e889eeb">
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debian/patches/VERSION_HISTORY
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debian/patches/cross.patch
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<a href="#f5ee29c1b000fb4e196f80dac7c2a76eebff0831">
<span class="deleted-file">
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debian/patches/fix-gcc6.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#09a8e11089bd7b184c2ba7778565c1350e1c7e3a">
src/Makefile
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<a href="#3bb175bf26bb3ab3de5f07e602b9cc3386857095">
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src/Makefile.qt
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<a href="#4cac2c1ed1b71ff97cd10f4788272d0df90b96c7">
src/ancestralnode.cpp
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<a href="#aeceaa74a491979f08ad416a15598bff8ba7772a">
src/ancestralnode.h
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<a href="#a5cb3c300f04d0a99e219e06efcd0566e4663d7d">
src/config.h
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<li class="file-stats">
<a href="#291390eaf4f94471f749f273b28561ea0c39a29c">
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src/fasttree_tree.cpp
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src/fasttree_tree.h
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<a href="#d2d72697fc11ba3feafc824b919b4bee9e6fa754">
src/guidetree.cpp
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<a href="#050afb7728274fc97a37ea629fbab6313409d93b">
src/node.cpp
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<li class="file-stats">
<a href="#00d53172160c1de25779d6e52d9e29c05b73fe63">
src/node.h
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<li class="file-stats">
<a href="#5e450d4f0ca2bcca4d34dd12ee2e83c901e26b9d">
src/prank.cpp
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<a href="#6117a3702bda861079bb122c2ed51f60aef5dced">
src/prank.h
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<a href="#ab785f2d799d471141dde7c0ec9c9566076906b3">
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src/prank.pro
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<a href="#2b5642954fad1626d35bc31a560c955fbf97c00f">
src/progressivealignment.cpp
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src/progressivealignment.h
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src/raxmlancestors.cpp
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src/raxmlancestors.h
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src/raxmlrebl.cpp
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src/raxmlrebl.h
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src/readalignment.cpp
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<a href="#4d5f41c5d5aa9f36efc0cde5026537a4895beb94">
src/readfile.cpp
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<a href="#a8b5872e88d9ab0717b8575706d01b7abc21e088">
src/readnewick.cpp
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<a href="#34c751f58731e0b44ac007f047e164fe5effb39f">
src/readnewick.h
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src/terminalnode.h
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src/terminalsequence.cpp
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src/translatesequences.cpp
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src/treenode.h
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The diff was not included because it is too large.
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