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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Aaron M. Ucko pushed to branch master at <a href="https://salsa.debian.org/med-team/ncbi-blastplus">Debian Med / ncbi-blastplus</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/66447a51caa24672ca571dc7f92d822ffd3b8874">66447a51</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-27T20:39:42-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.17.0+ds</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/8162eb8e559d0d138107e283e358a011da2c7566">8162eb8e</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-27T20:41:55-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Merge tag 'upstream/2.17.0+ds'
Upstream version 2.17.0(+ds).
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/81bb56c0d709fd571c9b99958b6651fed5a13dcd">81bb56c0</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-27T21:18:47-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/patches: Update for new release, mostly formally.
* debian/patches/series: Comment out support_mbedtls3, allow_pcre2,
and fix_bm_for_gcc15, all incorporated upstream.
* debian/patches/system_mbedtls_only: Drop code changes (incorporated
upstream) and port Makefile.connssl.lib's changes.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/257a79c76de79117c705d22900a44017e806bd9d">257a79c7</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-27T21:19:22-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/control: Require SSE 4.2 on x86 per upstream.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/ecfca8e20fbb065da0a684d36b74b6c19432b26b">ecfca8e2</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-27T22:23:33-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/rules: Explicitly supply VDB_LIBDIR to configure
... to avoid a bad interaction that led to spurious runpath entries in
binaries linked against VDB.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/0d922f644e9ca7620db08bbb98e347c85a3a1d64">0d922f64</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-27T22:26:46-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Override embedded-library zlib for libzcf.so
... which is Cloudflare's fork.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/f24eb42ea066463875a7f287a27c26babdc49a38">f24eb42e</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-28T16:30:17-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/copyright: Update with more help from lrc.
* Cover zlib_cloudflare alongside (unused) zlib, accounting for the
fork's additional copyright holders and years.
* Cover (unused) PCRE2's sljit subtree; factor out BSD-2-clause for it.
* Stop mentioning the retired extra copy of lmdb++.h.
* Enumerate cityhash and farmhash explicitly to allow for *-only
wildcarding without pulling in murmurhash.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/f1b513746d206f11ee02274020834d608e9e9488">f1b51374</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-28T22:49:24-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: Reformat via "cme fix dpkg-control" (routine-update).
* Format potentially multi-valued entries as
Key:
value1,
value2,
...
rather then
Key: value1,
value2,
...
* Move Standards-Version up to between Source and Maintainer.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/7ede11a805e1840ef47ab0cc394bd617e87c06e1">7ede11a8</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-28T23:06:21-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/copyright: Clean up whitespace (routine-update).
Namely, a few hard tabs and a trailing space.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-blastplus/-/commit/7c3ad37c04e81930176dd9e0ca086004918aa7a2">7c3ad37c</a></strong>
<div>
<span> by Aaron M. Ucko </span> <i> at 2025-09-28T23:09:00-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Finalize ncbi-blast+ 2.17.0+ds-1 for unstable.
</pre>
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