<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/cwltool">Debian Med / cwltool</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/d614059a0aa68cc47fe14ab8629ab711b9ef1e20">d614059a</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T15:03:28+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/327585131f6e682b1163b1daa7b71b90b5c772d7">32758513</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T15:03:29+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 3.1.20250925164626</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/1e04bfdaa17bda4f0cfb0add85884129058160d7">1e04bfda</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T15:03:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/3.1.20250925164626'

Update to upstream version '3.1.20250925164626'
with Debian dir 7fdafc1c7a29885b21bd96344ee6ad11aa571428</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/f9d7db7eaceffecc60a04277b0a6279d08476210">f9d7db7e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T15:03:47+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.2 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/6a3e41140aeac5471fd3e06e3eb34d8983e57f9f">6a3e4114</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T15:29:54+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshed patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/764532d5b40103552aa5329bfa80646f2e9592d5">764532d5</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T15:30:40+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Added patch to support the older pydot version in Debian (2.x).
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/3853515174bf4c18d8cfd2a5046160619f47fa2a">38535151</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T17:50:30+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: higher minimum schema-salad version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/cwltool/-/commit/8956afd1e5fb2dd183b20aa00080b777b8c65f98">8956afd1</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-09-30T17:50:30+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
273 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#fd5da61396a8376845bee5cdf71aaf3c98a888ae">
.circleci/config.yml
</a>
</li>
<li class="file-stats">
<a href="#b294c9af220963b9fb4fa10fa470c4a055fd95e0">
.github/workflows/ci-tests.yml
</a>
</li>
<li class="file-stats">
<a href="#c3aa8b7f1c613e43d3bb9d5ac52ac6603d945e89">
.github/workflows/codeql-analysis.yml
</a>
</li>
<li class="file-stats">
<a href="#353f068f2c0baf8ce60c6acdf27dd7a76eeab90e">
.github/workflows/quay-publish.yml
</a>
</li>
<li class="file-stats">
<a href="#6cd2a502257ede524d220cea6700e2fa98f071aa">
.github/workflows/wheels.yml
</a>
</li>
<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#7d26833a43d8865f6d9679068f6f9ee7d6e13dcf">
PKG-INFO
</a>
</li>
<li class="file-stats">
<a href="#19870f9b0b8f20ef922a33573257e96861e24fab">
build-cwltool-docker.sh
</a>
</li>
<li class="file-stats">
<a href="#dadc5432c9a6b51c7363aebeb49a7e1262353114">
cibw-requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#b56b7a64ee5cdb86aa33e58c869fc85468a88dfe">
<span class="deleted-file">

cwltool.egg-info/PKG-INFO
</span>
</a>
</li>
<li class="file-stats">
<a href="#0f5f9a487de6f81f4140b1291f27031478a7b0b2">
cwltool.egg-info/SOURCES.txt
</a>
</li>
<li class="file-stats">
<a href="#a17311858b6c815a72825208850500f02bb3de08">
<span class="deleted-file">

cwltool.egg-info/dependency_links.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#69e255a4dc375f4c8d44ed5337c5f39388b8d07b">
<span class="deleted-file">

cwltool.egg-info/entry_points.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb6f4b8299eb350113845f9c7dc30e5fbf558310">
<span class="deleted-file">

cwltool.egg-info/requires.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#480097309765cce0a01ddce912bede7b6acbfab4">
<span class="deleted-file">

cwltool.egg-info/top_level.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#fcee4645b95dc146480f9047114a2e72049e5ab1">
<span class="deleted-file">

cwltool.egg-info/zip-safe
</span>
</a>
</li>
<li class="file-stats">
<a href="#90c33545f5ce60ae423f1ed438c0430cf7bab047">
cwltool/_version.py
</a>
</li>
<li class="file-stats">
<a href="#f37416a929e52b34959bfb17948722683d25dca6">
cwltool/argparser.py
</a>
</li>
<li class="file-stats">
<a href="#2ae115f31900d67f6c05af16354d5c974310b740">
cwltool/checker.py
</a>
</li>
<li class="file-stats">
<a href="#aa5e6e35ab4cc6c72da3e9445433ed0158f5a8f5">
cwltool/command_line_tool.py
</a>
</li>
<li class="file-stats">
<a href="#90217c72d30b21f837fd6463805806fe63b95a1c">
cwltool/context.py
</a>
</li>
<li class="file-stats">
<a href="#35aae25e509c97eb2a85c462821e38cf1e586e62">
cwltool/cuda.py
</a>
</li>
<li class="file-stats">
<a href="#0def55aa5637c5a25dd8619887cf1d1128131d9e">
cwltool/cwlprov/provenance_profile.py
</a>
</li>
<li class="file-stats">
<a href="#913b13ebebe4beef686875fc60356c06b9da5380">
cwltool/cwlprov/ro.py
</a>
</li>
<li class="file-stats">
<a href="#0a02c50311f75912ff00d45d2c1917f503936a46">
cwltool/cwlviewer.py
</a>
</li>
<li class="file-stats">
<a href="#80642852f8a0e71e62102ce11da591b8633a2348">
cwltool/errors.py
</a>
</li>
<li class="file-stats">
<a href="#255ee49f33c79c25f6a55971fe53bd72a9fb8575">
cwltool/executors.py
</a>
</li>
<li class="file-stats">
<a href="#1a4debaa3574d5d928e4fc1d259929cac851b4b6">
cwltool/job.py
</a>
</li>
<li class="file-stats">
<a href="#a3e98c74964d2c1cb5af092da16f48e71c4c2632">
cwltool/load_tool.py
</a>
</li>
<li class="file-stats">
<a href="#ef56fd169f82fcdcb5c4e7b80a7164f20004c766">
cwltool/main.py
</a>
</li>
<li class="file-stats">
<a href="#a16f8442998c7b465cfc56e449a7f96b21552a70">
cwltool/mutation.py
</a>
</li>
<li class="file-stats">
<a href="#45fdabde16c0290a878c03592e05f73b34a49025">
cwltool/pack.py
</a>
</li>
<li class="file-stats">
<a href="#33e40c481719329f22e4c02f2541db3b13de6e80">
cwltool/pathmapper.py
</a>
</li>
<li class="file-stats">
<a href="#5d7d2aa4d6765c728df94c02d2c2e6cb24cb7d9b">
cwltool/process.py
</a>
</li>
<li class="file-stats">
<a href="#8ef03dfdaaca12a9fe761e5271d5db00052eee15">
cwltool/procgenerator.py
</a>
</li>
<li class="file-stats">
<a href="#59d7fbb03854abf26bd6d7715be3d3fde9688470">
cwltool/resolver.py
</a>
</li>
<li class="file-stats">
<a href="#a5c6c663c319fe44e80a2e72582e9adf85d45010">
cwltool/schemas/v1.1.0-dev1/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#8aceba5ad878608857350d1a38ae7e1ea845abaa">
cwltool/schemas/v1.1/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#5c14fd1d2bce2dee6591d216d7554516782e9d82">
cwltool/schemas/v1.2.0-dev1/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#fb7c2183bfd09de9842ed0f350dc3b2a2270f915">
cwltool/schemas/v1.2.0-dev2/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#195f5a01a802f82ee65311e12bb4c2de2093b737">
cwltool/schemas/v1.2.0-dev3/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#fd37353707d81d0cc69ea0d81e3121c8a6deded6">
cwltool/schemas/v1.2.0-dev4/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#17ee3ca2ff177000225345f1f1da5258f35ae62e">
cwltool/schemas/v1.2.0-dev5/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#94f0e6244ac6c5f2e97cd282d30129c73f94a41d">
cwltool/schemas/v1.3.0-dev1/cwl-runner.cwl
</a>
</li>
<li class="file-stats">
<a href="#1a83dade68a46d1b9e24c0fb7e5509dbe339d14d">
cwltool/secrets.py
</a>
</li>
<li class="file-stats">
<a href="#378e2474b973cfb519c38982736bf58bf15a8710">
cwltool/singularity_utils.py
</a>
</li>
<li class="file-stats">
<a href="#2c4224c9a8101f6afc03bd1e4710f44de4ce54b0">
cwltool/subgraph.py
</a>
</li>
<li class="file-stats">
<a href="#e9e3e992d70886ef80082acf93ee2396f88cc24b">
cwltool/update.py
</a>
</li>
<li class="file-stats">
<a href="#c2bfc1362ec300392c5cfa7383967202a58e606d">
cwltool/utils.py
</a>
</li>
<li class="file-stats">
<a href="#effa6ef05a80c49ac064b3f7d12471d4d6618e0d">
cwltool/validate_js.py
</a>
</li>
<li class="file-stats">
<a href="#981a72379b95d1fc9d93c9d8380918dd3ab82e9e">
cwltool/workflow.py
</a>
</li>
<li class="file-stats">
<a href="#d31ceef0fee952dc89cb48a8f4ee937c63917cf7">
cwltool/workflow_job.py
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#d9e0786232606e428a92f7ea1a5a562f8956492e">
<span class="deleted-file">

debian/patches/0003-Add-missing-cwl-runner-refs.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c8242c1dfd4fded0edad54140cae5307eae90117">
<span class="new-file">
+
debian/patches/0004-support-Pydot-versions-before-3.0.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#fcb92b9accd9db58b837ef9c16090c7d4830a9f9">
debian/patches/disable_prov
</a>
</li>
<li class="file-stats">
<a href="#79fae4487a64d7d50ec6944d24e3128abd337a37">
debian/patches/intersphinx
</a>
</li>
<li class="file-stats">
<a href="#1c4157ef3ebf1ee00fc02c93c1f70b65023a68c2">
debian/patches/privacy
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#271b54d579b58b0097c7c56b8ab060c6e3a67b4f">
docs/requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#c3d31b22dc9ed10076debebf911d367bc93462e7">
lint-requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#ff44ac040a9512deb3f0b47f410fc2f62d9736b6">
mypy-requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#2998f056a225c5ec06e401b2336e8f7f5fffee86">
mypy-stubs/pydot.pyi
</a>
</li>
<li class="file-stats">
<a href="#5d07e7d72637aa0d59c89d381fe6dc4cf46e2491">
pyproject.toml
</a>
</li>
<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#1627bd3db0737f7810b0e23038883f57a87fb0dd">
test-requirements.txt
</a>
</li>
<li class="file-stats">
<a href="#bd762798212c178c065aea1c395a62fa29117b08">
tests/CometAdapter.cwl
</a>
</li>
<li class="file-stats">
<a href="#48a232f5e05cbaa234aa30dfa88a8d19bc10a1bc">
tests/arg-empty-prefix-separate-false.cwl
</a>
</li>
<li class="file-stats">
<a href="#133fe3950dc634b0b817c0627e5aa70269702e0f">
<span class="new-file">
+
tests/cache_environment.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#153a8bde40a3a685d6a9f962c4a0db29674eb922">
<span class="new-file">
+
tests/cache_environment2.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#ba0d9ed4da97e9137875f3e3ee1a81c4c0deb4b2">
<span class="new-file">
+
tests/cache_environment_tool.cwl
</span>
</a>
</li>
<li class="file-stats">
<a href="#ff6b6c107ce9c3cd76534179d119c6339a3ec97d">
tests/checker_wf/optional_array_mismatch.cwl
</a>
</li>
<li class="file-stats">
<a href="#499b77f02e7bc4cb40bf111e3902f0f141f1a4e0">
tests/default_values_list.cwl
</a>
</li>
<li class="file-stats">
<a href="#4c2e9096b6ad40831c411ee13207c7a53f00f402">
tests/echo-badposition-expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#e93acad4733ee771fe982fd7a009f9cfd5111e81">
tests/echo-position-expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#f417db3e6d7edd1cd4d8176784dd7b270e9af027">
tests/echo-stdout-log-dir.cwl
</a>
</li>
<li class="file-stats">
<a href="#6114135dd99d21b62b938d64cf9260a92d1f1416">
tests/env.cwl
</a>
</li>
<li class="file-stats">
<a href="#98c1e4d87524a5347c05bae01246f5c25bd6bd48">
tests/env2.cwl
</a>
</li>
<li class="file-stats">
<a href="#2fa999dd3fa8f747dcf190351aec2b84e0aa344e">
tests/env3.cwl
</a>
</li>
<li class="file-stats">
<a href="#a436589ec9020f82c22574477f12b4d1b29210cb">
tests/env4.cwl
</a>
</li>
<li class="file-stats">
<a href="#0f3aa15def7b5b2221d01997b27648401d3a61c6">
tests/input_deps/docker-array-secondaryfiles.cwl
</a>
</li>
<li class="file-stats">
<a href="#d243ee907e819d219b310c171ee9a462f2c9c07f">
tests/iwdr_bad_expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#f91d5c5921d5b7021db7ed790d670724d165880f">
tests/iwdr_dir_literal_real_file.cwl
</a>
</li>
<li class="file-stats">
<a href="#5d79876c7a010f96766cb5e0a7e6e23b4d27e2f9">
<span class="new-file">
+
tests/iwdr_writable_secfile-inputs.json
</span>
</a>
</li>
<li class="file-stats">
<a href="#1773ebaebcd6f029834f5357f86aba43d38082d7">
<span class="new-file">
+
tests/iwdr_writable_secfile.cwl
</span>
</a>
</li>
<li class="file-stats">
<a href="#853af8c195f85edd54e6c296d2fedf52a9f1ac4d">
tests/load_contents-array.cwl
</a>
</li>
<li class="file-stats">
<a href="#3e00aeb820349dbe56a4f4296e2916550eb26d8d">
tests/loop-ext/all-output-loop-no-iteration.cwl
</a>
</li>
<li class="file-stats">
<a href="#1e917b8c0ceb599d84fb39a4cbcb90879d1e70da">
tests/loop-ext/all-output-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#9920badb03a1ce0ceb4e974510673fdd70b1b4a0">
tests/loop-ext/default-value-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#d689d9c6b7fd2320f2f89afbaae66c965ea195e5">
tests/loop-ext/invalid-loop-command-line-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#94c16a7831d1f7e52cb49645d3153ec991979d9a">
tests/loop-ext/invalid-loop-expression-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#5b15cd331c1d729df4ed91e22a2e19c3e8ee897e">
tests/loop-ext/invalid-loop-hint.cwl
</a>
</li>
<li class="file-stats">
<a href="#33019d641e848626255a473f65215b0f9da4c193">
tests/loop-ext/invalid-loop-scatter.cwl
</a>
</li>
<li class="file-stats">
<a href="#52fe1eabdb0fe35b1fa16120b79c53cfe230a768">
tests/loop-ext/invalid-loop-when-exception.cwl
</a>
</li>
<li class="file-stats">
<a href="#dfef43c91bb75893233cec91a2f7f675437ffd6d">
tests/loop-ext/invalid-loop-when.cwl
</a>
</li>
<li class="file-stats">
<a href="#bb85ee9e30d5b0a65cbb39138f70df5652c88a35">
tests/loop-ext/invalid-loop-workflow.cwl
</a>
</li>
<li class="file-stats">
<a href="#b3d8d3ac2153fc79a13a3c6b3741b4570eb597c8">
tests/loop-ext/invalid-multi-source-loop-no-requirement.cwl
</a>
</li>
<li class="file-stats">
<a href="#9a01f01b37aa0cda249af3ab8e1f0525e2b4c567">
tests/loop-ext/invalid-no-loopWhen.cwl
</a>
</li>
<li class="file-stats">
<a href="#6e3bae1d922c91574891f235c2e6eed92cb0f684">
tests/loop-ext/invalid-non-boolean-loopWhen.cwl
</a>
</li>
<li class="file-stats">
<a href="#12a7e99421d46e24996200610da0726b02e10101">
tests/loop-ext/invalid-non-boolean-loopWhen2.cwl
</a>
</li>
<li class="file-stats">
<a href="#e2b45a4eb4d5f957f02e5bea07e0df577ee18b07">
tests/loop-ext/invalid-value-from-loop-no-requirement.cwl
</a>
</li>
<li class="file-stats">
<a href="#27fb2e7666b8fe0d722de12ac763490db80db7ea">
tests/loop-ext/loop-inside-loop-all.cwl
</a>
</li>
<li class="file-stats">
<a href="#2a70f532447cbb086ae8393d1227d79179d5d11d">
tests/loop-ext/loop-inside-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#3f8646f387a4a9abeaaea67e02324e0d61929800">
tests/loop-ext/loop-inside-scatter.cwl
</a>
</li>
<li class="file-stats">
<a href="#dd16f95baa7659b890489950a40c2e939ddc21e4">
tests/loop-ext/multi-source-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#d2b0e0e5ffb80b2025fcf76218b6bafa04969641">
tests/loop-ext/opt-var-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#5914ee5a4aecc5ad67b4cfa0d91ef3dda90daed4">
tests/loop-ext/scatter-inside-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#decb4dc39687953a7957f6888508bdc9a35f421e">
tests/loop-ext/single-var-loop-no-iteration.cwl
</a>
</li>
<li class="file-stats">
<a href="#b9ffaf47140317187ff3616208372199b9dd56fc">
tests/loop-ext/single-var-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#9e2a179a489827eec0dfe209221ae9ec924c7835">
tests/loop-ext/two-vars-loop-2.cwl
</a>
</li>
<li class="file-stats">
<a href="#1eb1d3bb303823237d3d426c30b28f67f653061a">
tests/loop-ext/two-vars-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#565845a6c4e8b207ba478d12099036623362c13d">
tests/loop-ext/value-from-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#ca73cb58e47ab9ca8d0c5c4bfa508cc8a551d539">
tests/loop/all-output-loop-no-iteration.cwl
</a>
</li>
<li class="file-stats">
<a href="#b9d63d1eced24ab6d5a4e504c1bc3a99b65bc04a">
tests/loop/all-output-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#e3cd97f2f0e2a00bbbd9b7be54ba4cba7f9f2dd5">
tests/loop/default-value-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#5a5c991f667ba1ee4b9eb22750ced03838d2021b">
tests/loop/invalid-loop-scatter.cwl
</a>
</li>
<li class="file-stats">
<a href="#2febc35153b0723e3184df60bfe84cd16fb6f3a9">
tests/loop/invalid-loop-when-exception.cwl
</a>
</li>
<li class="file-stats">
<a href="#8cebdd14d33d684070d7bf3d49c08afd642fc89a">
tests/loop/invalid-loop-when-exception2.cwl
</a>
</li>
<li class="file-stats">
<a href="#ffeb61699dae253439a965e0230dd384585c6f79">
tests/loop/invalid-multi-source-loop-no-requirement.cwl
</a>
</li>
<li class="file-stats">
<a href="#67c4d736a3c0aaf3e81d80d47152d267c61da6fd">
tests/loop/invalid-no-loopWhen.cwl
</a>
</li>
<li class="file-stats">
<a href="#baf80dd52f9f046f9519b5dfbfe5cd8d0b0ce580">
tests/loop/invalid-non-boolean-loopWhen.cwl
</a>
</li>
<li class="file-stats">
<a href="#ac22a237f2529e0ca8961a163aecb8d2d2138083">
tests/loop/invalid-non-boolean-loopWhen2.cwl
</a>
</li>
<li class="file-stats">
<a href="#abbe402d33bb025e1084dd4d2ae58e9860587543">
tests/loop/invalid-value-from-loop-no-requirement.cwl
</a>
</li>
<li class="file-stats">
<a href="#57bf4b3e2e6e1faa6385c7d2a887ad0d24e1b06d">
tests/loop/loop-inside-loop-all.cwl
</a>
</li>
<li class="file-stats">
<a href="#95e6db8a9501f9c3d03b07fb58245387d4ae5baa">
tests/loop/loop-inside-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#7174f720d85c878766ec0c1b5798099d560e9122">
tests/loop/loop-inside-scatter.cwl
</a>
</li>
<li class="file-stats">
<a href="#3db32561850f605db592d28b1ff7df3520268633">
tests/loop/multi-source-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#ec8297aeb4e8dcf989e3114df0f6193300d75a32">
tests/loop/opt-var-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#7c3c723039a0f2ff25f18b184104d85ff858aa54">
tests/loop/scatter-inside-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#1d092749247c3bfb3a54ef6bafa4bbd97404a1f9">
tests/loop/single-var-loop-no-iteration.cwl
</a>
</li>
<li class="file-stats">
<a href="#a61fff69c190fc1ec80f28c1deb154294e78aba7">
tests/loop/single-var-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#9f5a5943457508948c522cac69146dc6add7d47f">
tests/loop/two-vars-loop-2.cwl
</a>
</li>
<li class="file-stats">
<a href="#e0a9fb657778f71dfab391f29b55ebc56bb948fe">
tests/loop/two-vars-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#2caaf2d7a346ec69ce4f7348dac60b0e0e8a79e4">
tests/loop/value-from-loop.cwl
</a>
</li>
<li class="file-stats">
<a href="#4a3e247f9d5065df6f555a5516058ed00f7547f8">
tests/nested-array.cwl
</a>
</li>
<li class="file-stats">
<a href="#cd759fe19ebe259987e8a1c0ed87bc6b714cd590">
tests/non_portable.cwl
</a>
</li>
<li class="file-stats">
<a href="#89ce006eac2e50f97679fc1198bb8bbdf9b1c66c">
tests/non_portable2.cwl
</a>
</li>
<li class="file-stats">
<a href="#a9b42d35065b1c0f80964109e095c7694cc4e26a">
tests/override/env-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#34192bb3aa3fb244d77106b52b63d4e8b8969c2c">
tests/override/env-tool_v1.1.0-dev1.cwl
</a>
</li>
<li class="file-stats">
<a href="#5e6fb5a8fea15bde8b8ecb97377e952db5d63db6">
tests/override/env-tool_v1.1.cwl
</a>
</li>
<li class="file-stats">
<a href="#0d982caec4458357b04ca260317bf279b3916c7c">
tests/portable.cwl
</a>
</li>
<li class="file-stats">
<a href="#9c2f6e04a58f54b34870263bc0b3cb71611ca099">
tests/reloc/test.cwl
</a>
</li>
<li class="file-stats">
<a href="#3a9af346bd377f0885536145f0377dcbcfc9f55d">
tests/scatter_numbers.cwl
</a>
</li>
<li class="file-stats">
<a href="#0b3eaa5be61c282d88765f5a5ac0be8acdcaa961">
tests/secondary-files-bad.cwl
</a>
</li>
<li class="file-stats">
<a href="#af31afb58e27c6da778f697c48e2809e328d3134">
tests/secondary-files-required-container.cwl
</a>
</li>
<li class="file-stats">
<a href="#829718aa7cf18ef8a4110326a47937ce89174f4e">
tests/secondary-files-required-missing-container.cwl
</a>
</li>
<li class="file-stats">
<a href="#a4d3b8d2921c82c34c5afa41066477aba090b135">
tests/secondary-files-string-v1.cwl
</a>
</li>
<li class="file-stats">
<a href="#41f5e03b372154b0fbca93b340acb7b10db785a8">
tests/secondary-files.cwl
</a>
</li>
<li class="file-stats">
<a href="#441eb701c2ff3d642718a3879a213d0b67349997">
tests/sing_pullfolder_test.cwl
</a>
</li>
<li class="file-stats">
<a href="#32f47fd1aa099580e4dbd385a3ed2306a0e7183e">
tests/subgraph/1432.cwl
</a>
</li>
<li class="file-stats">
<a href="#dbfb9b5be206054b1c7ef041d924da6587e6223c">
tests/subgraph/env-tool2.cwl
</a>
</li>
<li class="file-stats">
<a href="#175925307a1d82ddc0551c63d13b30aa4dcb6f4b">
tests/subgraph/env-tool2_no_env.cwl
</a>
</li>
<li class="file-stats">
<a href="#d6f02d7f71adc065a560452a6248529f570a5d72">
tests/subgraph/env-tool2_req.cwl
</a>
</li>
<li class="file-stats">
<a href="#4f61dbf99df17fe738c08b546116a9788ba9e5c1">
tests/subgraph/env-wf2.cwl
</a>
</li>
<li class="file-stats">
<a href="#6b905fb7a24f5cb3074c5f46f7946fa512afb64f">
tests/subgraph/env-wf2_hint_collision.cwl
</a>
</li>
<li class="file-stats">
<a href="#3887b0df7ec676e2f523c2c2579c9b23adc455f3">
tests/subgraph/env-wf2_hint_req_collision.cwl
</a>
</li>
<li class="file-stats">
<a href="#ef4a3b2861fb00d645b2171c9966cdbb057c5234">
tests/subgraph/env-wf2_long.cwl
</a>
</li>
<li class="file-stats">
<a href="#7c9f73e10081c0f1a35416152b471158864d98af">
tests/subgraph/env-wf2_only_hint.cwl
</a>
</li>
<li class="file-stats">
<a href="#16d578f539bba3a693b644d4e0333dab114f6296">
tests/subgraph/env-wf2_req_collision.cwl
</a>
</li>
<li class="file-stats">
<a href="#f22576fade6a38a77c1498e9cc9890d3baf26e53">
tests/subgraph/env-wf2_subwf-packed.cwl
</a>
</li>
<li class="file-stats">
<a href="#77b37dd0bb55fa6153f55bea222830309fbbfb83">
tests/subgraph/env-wf2_subwf.cwl
</a>
</li>
<li class="file-stats">
<a href="#9e0157155236034dd62b1cc9220ed225a3fe0bc3">
tests/subgraph/env-wf2_subwf_b.cwl
</a>
</li>
<li class="file-stats">
<a href="#ad6d302aa462e72c333de3a7d15c82fdc284ff20">
tests/subgraph/steplevel-resreq.cwl
</a>
</li>
<li class="file-stats">
<a href="#85b29db7d19a8d0907b97431c0086001be95bde8">
tests/subgraph/timelimit2-wf.cwl
</a>
</li>
<li class="file-stats">
<a href="#bc0f1eab60e0f2f2054d182f241bd492c68b9f9a">
<span class="new-file">
+
tests/test_caching.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#4c6bbd05056e1e69d1be64a8d37e8baf9fcbba97">
tests/test_context.py
</a>
</li>
<li class="file-stats">
<a href="#707e62dc1527185c325c67147ec56c5e867a3f5e">
tests/test_dependencies.py
</a>
</li>
<li class="file-stats">
<a href="#fd36ce8199a25552ebd405ff70c0d081800b085a">
tests/test_environment.py
</a>
</li>
<li class="file-stats">
<a href="#c850a901a4677d28f381ddf53272d079cf0d4ae0">
tests/test_examples.py
</a>
</li>
<li class="file-stats">
<a href="#bcc6a53c62c7fab9645bbd4d27f4e37414abdc59">
tests/test_iwdr.py
</a>
</li>
<li class="file-stats">
<a href="#5c16fdb0db3605a1d39395e928f8847b06011890">
tests/test_mpi.py
</a>
</li>
<li class="file-stats">
<a href="#db9bcd9b5f79b4aea346161e29703bf7b93c73b6">
tests/test_subclass_mypyc.py
</a>
</li>
<li class="file-stats">
<a href="#5663e443202536bf998128fc14a6086ce83cf4c7">
tests/test_validate.py
</a>
</li>
<li class="file-stats">
<a href="#68d0698f2b7f0814e259b54d5427e1492e1cb396">
tests/trs/Dockstore.cwl
</a>
</li>
<li class="file-stats">
<a href="#58b2bcffa380cd8cf54fc4113ce665cf94bc3438">
tests/trs/md5sum-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#4f5e5d8e9fca25e91732fa82113435fd58ffbc58">
tests/trs/md5sum-workflow.cwl
</a>
</li>
<li class="file-stats">
<a href="#4d59a197330bc83fdefcf649ef3f1f12f621192f">
tests/utf_doc_example.cwl
</a>
</li>
<li class="file-stats">
<a href="#d1559401ea2f091a6aa224c3f41220c395ecb169">
tests/util.py
</a>
</li>
<li class="file-stats">
<a href="#4294c905035a42474f86ea1986ea96cd871ac686">
tests/wc-tool-bad-hints.cwl
</a>
</li>
<li class="file-stats">
<a href="#3989f735174cb3428563b2ac78abbcb86c283a36">
tests/wc-tool-bad-reqs.cwl
</a>
</li>
<li class="file-stats">
<a href="#fd8ba00989715374a5e932f688f7d7ce47471e07">
tests/wf/1496.cwl
</a>
</li>
<li class="file-stats">
<a href="#1ec5e88c747b3eb7825c74957129d7136983ecff">
tests/wf/1590.cwl
</a>
</li>
<li class="file-stats">
<a href="#5fde8ccc39f350aefda97eff61c797d39b8cd98d">
tests/wf/1st-workflow.cwl
</a>
</li>
<li class="file-stats">
<a href="#e5fe1e5adeca4914e093020689ffa460d1356a80">
tests/wf/811-12.cwl
</a>
</li>
<li class="file-stats">
<a href="#de04b375388a13f31d21ec277f1af9532b618279">
tests/wf/811.cwl
</a>
</li>
<li class="file-stats">
<a href="#b2aac4508de9b4ff44fc35b733e7c559a8052eb8">
tests/wf/816_tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#e6767af1f77de4a3c1d946ae50120d49c1ac47ea">
tests/wf/816_wf.cwl
</a>
</li>
<li class="file-stats">
<a href="#0c84ffdec462595767f99774547bb860bf847665">
tests/wf/910.cwl
</a>
</li>
<li class="file-stats">
<a href="#f74d2be9ae1d3cb750c2c564feedd70d819422b6">
tests/wf/arguments.cwl
</a>
</li>
<li class="file-stats">
<a href="#f9ef46a41f4cb6d2b592550218aab1e901e7123e">
tests/wf/bad-stderr-expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#2fa81374439d6e9c85c5e4388e193cf167d254a8">
tests/wf/bad-stdin-expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#e84193bc476ca49cc4358a6e6c3e92d27242fcde">
tests/wf/bad-stdout-expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#f61dc89feddab070c7717cebeeb83a774858276b">
tests/wf/bad_networkaccess.cwl
</a>
</li>
<li class="file-stats">
<a href="#2d56bcff77d6cc82212113d93ac2a61326f84f7d">
tests/wf/bad_timelimit.cwl
</a>
</li>
<li class="file-stats">
<a href="#5e97dfa73759f5d604c0fe3798eeb612b21e1ccd">
tests/wf/cache_test_workflow.cwl
</a>
</li>
<li class="file-stats">
<a href="#539cb8a2dc61540209b5668e45b93ba5969ab26a">
tests/wf/cat-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#e561b1b8fa83ecfbcca4567523296debca9778df">
tests/wf/conditional_step_no_inputs.cwl
</a>
</li>
<li class="file-stats">
<a href="#8f630308eaf11c3d673e258b76cf6023db48f119">
tests/wf/conflict.cwl
</a>
</li>
<li class="file-stats">
<a href="#5d97a3d1516641eb574a9c42982fdb445eefc57b">
tests/wf/cores_float.cwl
</a>
</li>
<li class="file-stats">
<a href="#7b4d2cae76f75e5d345c8e7b160a30a8581bb64c">
tests/wf/default-dir5.cwl
</a>
</li>
<li class="file-stats">
<a href="#8359e0cee4320ce766bd24514fcc64cd3c55dc5a">
tests/wf/default-wf5.cwl
</a>
</li>
<li class="file-stats">
<a href="#4d452fbccc72fc92e580e1676801a4a534ac4532">
tests/wf/double-nested.cwl
</a>
</li>
<li class="file-stats">
<a href="#b01bbbac8d889951e02f0dbbccb2ce22e67d2d65">
tests/wf/expect_trick_packed.cwl
</a>
</li>
<li class="file-stats">
<a href="#ae960a79040eb0ff3a1ce22077912c437b000dc6">
tests/wf/extract_region_specs.cwl
</a>
</li>
<li class="file-stats">
<a href="#cdc61c6ae12fa4ad9c3e92f3f0cc0ff94a4c7a57">
tests/wf/floats_small_and_large.cwl
</a>
</li>
<li class="file-stats">
<a href="#b35b4275f676e79fd214502b7ffd2f67a099eded">
tests/wf/generator/pytoolgen.cwl
</a>
</li>
<li class="file-stats">
<a href="#f73470a750ab265074ffd3a1b6fbd74452b8025e">
<span class="new-file">
+
tests/wf/inp-filelist.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#7486005c3fee9e93131be78be52c8208b940a616">
tests/wf/input_named_id.cwl
</a>
</li>
<li class="file-stats">
<a href="#d8dbac79c1ecd3b213efd05081ecb55901fe20a4">
<span class="new-file">
+
tests/wf/iwd-container-entryname1.cwl
</span>
</a>
</li>
<li class="file-stats">
<a href="#ae708676b75a1a7ed7eb94e7b853945120dd4145">
<span class="new-file">
+
tests/wf/iwd-container-entryname3.cwl
</span>
</a>
</li>
<li class="file-stats">
<a href="#c31a8c6af1ba653a51ace6c3fcf834934ecfe231">
tests/wf/iwd-passthrough1.cwl
</a>
</li>
<li class="file-stats">
<a href="#84fed153ecdb8c4da72bc7e578b4d91015e5f30e">
tests/wf/iwdr-empty.cwl
</a>
</li>
<li class="file-stats">
<a href="#e8c21a3a4f9f3f6a994afb9c157e309eac167e1b">
tests/wf/iwdr-entry.cwl
</a>
</li>
<li class="file-stats">
<a href="#0e12d20708ab83ff2d026a2ed4faa03183444a23">
tests/wf/iwdr-passthrough-successive.cwl
</a>
</li>
<li class="file-stats">
<a href="#f46487005a3da445cd7374d8842a4dde09a8711f">
tests/wf/literalfile.cwl
</a>
</li>
<li class="file-stats">
<a href="#256c58831fc5dbe6f477f5d5cf62db404ccde588">
<span class="new-file">
+
tests/wf/loadContents-input.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#3973649179a65d66f9ced1f0229fa129b6d06603">
tests/wf/malformed_outputs.cwl
</a>
</li>
<li class="file-stats">
<a href="#0d5b1b7c6389ff23bebb805ca866ba319c6d8250">
tests/wf/missing-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#42569cc61a2f251ef3f81c03a096ac8ee215b76b">
tests/wf/mpi_env.cwl
</a>
</li>
<li class="file-stats">
<a href="#8e4f9653ad065e2206bab1d2a5ed996446ddfc3b">
tests/wf/mpi_expr.cwl
</a>
</li>
<li class="file-stats">
<a href="#49bac33e34d93bd7ab63dd917b899e8c7b4e271f">
tests/wf/mpi_line_count.cwl
</a>
</li>
<li class="file-stats">
<a href="#31aa5e30d1dd7d4d1431f1e5246525004bf48f5b">
tests/wf/mpi_simple.cwl
</a>
</li>
<li class="file-stats">
<a href="#902d29177852ece91e830a5326ad29fecf504fa4">
tests/wf/mpi_simple_wf.cwl
</a>
</li>
<li class="file-stats">
<a href="#2c9c05d14ecbe8c40bb535c9ba2ec5d7cb0daead">
tests/wf/nested.cwl
</a>
</li>
<li class="file-stats">
<a href="#7ee9f2742b889be70c2daa5f9f668da0411514bf">
tests/wf/networkaccess-fail.cwl
</a>
</li>
<li class="file-stats">
<a href="#c8e32ee8ae5c2eec92877e0103d87abd4282621f">
tests/wf/networkaccess.cwl
</a>
</li>
<li class="file-stats">
<a href="#8ab748030283a48421e3a75e8a39af36c7e93fdb">
tests/wf/no-parameters-echo.cwl
</a>
</li>
<li class="file-stats">
<a href="#818a73c2f5a1b4520048f53846b4e10131b1cdb2">
tests/wf/nvidia-smi-cc.cwl
</a>
</li>
<li class="file-stats">
<a href="#bc0f950b581bc5e16f113b85aee93b6905904b68">
tests/wf/nvidia-smi-container.cwl
</a>
</li>
<li class="file-stats">
<a href="#1ab351166e9cbea023c6d333b8afb09d6c5d3dea">
tests/wf/nvidia-smi-max.cwl
</a>
</li>
<li class="file-stats">
<a href="#53529b5ad70f03366bbbe6adede3e841879278fd">
tests/wf/nvidia-smi-range.cwl
</a>
</li>
<li class="file-stats">
<a href="#a50dbeef1193526e365f3dfcf40a987cd6b0b71d">
tests/wf/nvidia-smi.cwl
</a>
</li>
<li class="file-stats">
<a href="#a41cb7c899df91df31bf0ac6d998af818e1b4ba2">
tests/wf/operation/abstract-cosifer.cwl
</a>
</li>
<li class="file-stats">
<a href="#b0961931daa29cf5495a494d9b5299fe54905f0d">
tests/wf/operation/operation-single.cwl
</a>
</li>
<li class="file-stats">
<a href="#e3a2c135872245be444d76de339dc087b299d383">
tests/wf/optional-numerical-output-0.cwl
</a>
</li>
<li class="file-stats">
<a href="#d1dbae49dcb15aee2b2645722a10035d22acfa01">
tests/wf/optional_src_mandatory_sink.cwl
</a>
</li>
<li class="file-stats">
<a href="#96fb316353276a63f6905ccdb90eec1831342d2f">
tests/wf/packed-with-loadlisting.cwl
</a>
</li>
<li class="file-stats">
<a href="#3b0d9a20f97774c279faf8161c173b83c35bed69">
tests/wf/packed_no_main.cwl
</a>
</li>
<li class="file-stats">
<a href="#5fa0eeb5b8276bc0cf70f5a460624175e93e62f4">
tests/wf/paramref_arguments_roundtrip.cwl
</a>
</li>
<li class="file-stats">
<a href="#57704745c38d99f8d89b75a6e86915ba99d4c065">
tests/wf/paramref_arguments_self.cwl
</a>
</li>
<li class="file-stats">
<a href="#cf3baaa4ca0d39a9be57c3152ef703c919ae0abd">
tests/wf/record_outputeval.cwl
</a>
</li>
<li class="file-stats">
<a href="#bcf98cea1954205a8f0a29ece3352dcb97adf2d8">
tests/wf/resreq_expr_float_v1_0.cwl
</a>
</li>
<li class="file-stats">
<a href="#c5aa70a88c6246c2f3c2c3c19fbd7b40a20ba05b">
tests/wf/resreq_expr_float_v1_2.cwl
</a>
</li>
<li class="file-stats">
<a href="#2ea1c5a0994d660808afa1ef3d10f152da8f51cf">
tests/wf/scatter2.cwl
</a>
</li>
<li class="file-stats">
<a href="#f983991c3d0653bdd1ad08affbe033963170c93d">
tests/wf/scatter2_subwf.cwl
</a>
</li>
<li class="file-stats">
<a href="#7fc40e54748c78ad8a8a54e878847a2455b2a892">
tests/wf/schemadef-bug-1473.cwl
</a>
</li>
<li class="file-stats">
<a href="#71e9d67875c3d4d189bb8acf9b7f6ea5bededcc4">
tests/wf/schemadef-tool-12.cwl
</a>
</li>
<li class="file-stats">
<a href="#85387ddfbec676a0ec329e9d477d7755ffdddb49">
tests/wf/schemadef-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#c5ccb40393bf7c3d8ef53e6c621a2b8058b27835">
tests/wf/sec-tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#19e49341fd52a8108ca1b63338d2ac4888f2a07a">
tests/wf/sec-wf-out.cwl
</a>
</li>
<li class="file-stats">
<a href="#a73a63619c3e30be1502b56e84d1b459fc95cd83">
tests/wf/sec-wf.cwl
</a>
</li>
<li class="file-stats">
<a href="#ffc6f9c37b036ffd8915c45ff46c45aa31bdb4bb">
tests/wf/secret_job.cwl
</a>
</li>
<li class="file-stats">
<a href="#cb03258ca7ba1f6841bd46f9cce634945677f718">
tests/wf/secret_wf.cwl
</a>
</li>
<li class="file-stats">
<a href="#f0c82826c4f502d9b27fadc2cc4a4740a9d76ae9">
tests/wf/separate_without_prefix.cwl
</a>
</li>
<li class="file-stats">
<a href="#b247754ab17cb10c9499096967ce1843a9fc79b1">
tests/wf/shm_size.cwl
</a>
</li>
<li class="file-stats">
<a href="#432a7eba9a8bd0c4ca48ab98389586860a5e3103">
tests/wf/storage_float.cwl
</a>
</li>
<li class="file-stats">
<a href="#d503a5d79418d1b8ce1d4feae43bce1b768ab6aa">
tests/wf/tar-param.cwl
</a>
</li>
<li class="file-stats">
<a href="#8633cc5c016359900744d86908d82d80e5b832af">
tests/wf/three_step_color.cwl
</a>
</li>
<li class="file-stats">
<a href="#e8da03872ff1817869a649a9b3aac08c14aebfef">
tests/wf/timelimit-fail.cwl
</a>
</li>
<li class="file-stats">
<a href="#2006f108c4ab27074ac61bbff33eb3ad22506ffb">
tests/wf/timelimit.cwl
</a>
</li>
<li class="file-stats">
<a href="#bf7e6bf2096c07bd55d9645a42e05353fa6d3d72">
tests/wf/touch_tool.cwl
</a>
</li>
<li class="file-stats">
<a href="#0f883b1975a2b798a19180fc18484b3edc94b7d7">
tests/wf/trick_defaults.cwl
</a>
</li>
<li class="file-stats">
<a href="#8002541ab4fb05b738656e99b7a01c782d8a05c4">
tests/wf/trick_defaults2.cwl
</a>
</li>
<li class="file-stats">
<a href="#efb28ef7a3fab969a43d58f5b69279d5ff2f8681">
tests/wf/vf-concat.cwl
</a>
</li>
<li class="file-stats">
<a href="#2d7aa5b4ac8d83814c5224a227f8529fa7236469">
tests/wf/workreuse-fail.cwl
</a>
</li>
<li class="file-stats">
<a href="#87bd0bb4cb5a91741fc170729a84c1b49bd657d0">
tests/wf/workreuse.cwl
</a>
</li>
<li class="file-stats">
<a href="#8017c49a4e622294997e0b9b2fb16a5ed23b768b">
tests/with_doc.cwl
</a>
</li>
<li class="file-stats">
<a href="#0a25095048104e735f8d3390a1b72724ffdb8da8">
tests/without_doc.cwl
</a>
</li>
<li class="file-stats">
<a href="#61be067c7cf3bdbf8a6b021a2b5167eb30612d0c">
tox.ini
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">

<br>
<a href="https://salsa.debian.org/med-team/cwltool/-/compare/31c7864a185f6ca6c280ac14da56b5dd7dd060fc...8956afd1e5fb2dd183b20aa00080b777b8c65f98">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<span style="color: transparent; font-size: 0; display: none; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0;">
Notification message regarding https://salsa.debian.org/med-team/cwltool/-/compare/31c7864a185f6ca6c280ac14da56b5dd7dd060fc...8956afd1e5fb2dd183b20aa00080b777b8c65f98 at 1759308955
</span>



</p>
</div>
</body>
</html>