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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Sergio Durigan Junior pushed to branch master at <a href="https://salsa.debian.org/med-team/bifrost">Debian Med / bifrost</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bifrost/-/commit/f83c67ff032a8bcee211ad324431434886fad60d">f83c67ff</a></strong>
<div>
<span> by Sergio Durigan Junior </span> <i> at 2025-10-04T12:04:06-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.3.5</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bifrost/-/commit/0aaae651b3c2c1ec72b0b01b9dcda06098586cf4">0aaae651</a></strong>
<div>
<span> by Sergio Durigan Junior </span> <i> at 2025-10-04T12:04:07-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.3.5'
Update to upstream version '1.3.5'
with Debian dir b2c9239b53201631bd66fcd075a05b2f19bb86e0</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bifrost/-/commit/d961b0364ad6e96822438ef6326075468860154e">d961b036</a></strong>
<div>
<span> by Sergio Durigan Junior </span> <i> at 2025-10-04T12:08:37-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/t/data/*: Add example data to git repository.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bifrost/-/commit/07cc627e8371a109e20b1136bb529f0b387bb558">07cc627e</a></strong>
<div>
<span> by Sergio Durigan Junior </span> <i> at 2025-10-04T12:09:07-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/bifrost.examples: Bring back examples file.
Now that there's data to be installed, we can bring back the examples
file.
Closes: #1117180
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/bifrost/-/commit/3b221fc8ef7955d6917149858b542ff1e570ea02">3b221fc8</a></strong>
<div>
<span> by Sergio Durigan Junior </span> <i> at 2025-10-04T12:26:04-04:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>changelog for 1.3.5-1
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
16 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#4feb6fdda8c5cca9fde6f8e16150483c9eab465c">
<span class="new-file">
+
debian/bifrost.examples
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#c4d2c1bc55bbdb315e5a906d6025c9568e1c28c8">
<span class="new-file">
+
debian/tests/data/README.data
</span>
</a>
</li>
<li class="file-stats">
<a href="#b60789c8f7c7974f515ad88ad7a05aa94262c602">
<span class="new-file">
+
debian/tests/data/ecoli_1K_1.fq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#2e2a2e4f461695e3febd7cc10a38bf1a2e7a9649">
<span class="new-file">
+
debian/tests/data/ecoli_1K_2.fq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#685ea0567cf75d227de6a9d961d0f4855e5a7a59">
src/Bifrost.cpp
</a>
</li>
<li class="file-stats">
<a href="#69a3fc925677fb76e80c6a43b92cecf3c2804a71">
src/ColoredCDBG.hpp
</a>
</li>
<li class="file-stats">
<a href="#30e93aae53b82162fcf7f1a2a99bf2f1083a8f2b">
src/ColoredCDBG.tcc
</a>
</li>
<li class="file-stats">
<a href="#b8f0ebc9546aa4ac66e00b4c505dffa1fa5ed693">
src/Common.hpp
</a>
</li>
<li class="file-stats">
<a href="#713a6d4f63138f8f558b1d2daadbd5c1a1477088">
src/CompactedDBG.hpp
</a>
</li>
<li class="file-stats">
<a href="#3daf7a107616847274c60a04212621a4dd9afe0e">
src/CompactedDBG.tcc
</a>
</li>
<li class="file-stats">
<a href="#99797dcd308512f2dc38d36b4e61ae4fe4c2317a">
src/KmerHashTable.hpp
</a>
</li>
<li class="file-stats">
<a href="#f915204b2a91d106f0b4b62dcb5af50e1b101c90">
src/MinimizerIndex.cpp
</a>
</li>
<li class="file-stats">
<a href="#0fc5d44875f4e57010824644e4fdbdcfde2b7d0d">
src/MinimizerIndex.hpp
</a>
</li>
<li class="file-stats">
<a href="#e87e9213fb23bd83a5a76c58ad726f83e1da721d">
src/Search.tcc
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
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