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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
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<ul>
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/a33b0ec4b5fe1c6b1b4d5b2c89a2df2e7702c297">a33b0ec4</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-10-11T09:05:15+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 9.0.0</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/e1f1ea9906d6139bfb77442985179cbfaaf1d092">e1f1ea99</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-10-11T09:05:33+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/9.0.0'
Update to upstream version '9.0.0'
with Debian dir 91ea4d72bc047843cfda3406784a1e46e24d34a0</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/49a4b57a72dc8ebcd9bdf16bd0e90c46fb142aa8">49a4b57a</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2025-10-11T09:09:50+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version.
Added new unified plugin system.
Toil now supports URL plugins.
--importWorkersThreshold has been renamed to --importWorkersBatchsize.
Fix a bug in Toil server mode CWL YAML parsing.
CWL worker import works again.
CWL: Fixed a regression with tmpdir_prefix and nonexistent diectories.
Added --cwl-min-ram to CWL. This specifies a minimum memory allocation for all jobs. This is different than --defaultMemory, which only applies to jobs without explicitly set memory requirements.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/0291785e6b9458ef21abb3c5449d18a65c68b0f5">0291785e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-10-11T09:13:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshed patches.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/90699085b8917e3dd24a16461416cd0ddf1c28a4">90699085</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-10-11T13:04:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: needs pytest-httpserver for a new test.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/6d065612fa14633e61ae88a37827a2864a71806c">6d065612</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2025-10-11T13:05:10+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>release to unstable
</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
62 changed files:
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