<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/metabat">Debian Med / metabat</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/metabat/-/commit/dd808b2635056c0bee4086a530ecfb1310b7f3bf">dd808b26</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2025-10-19T16:39:57+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.18</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
33 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#b2270542d41297db1ee0d12698e609ea3ec25ce7">
INSTALL.md
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
<span class="new-file">
+
VERSION
</span>
</a>
</li>
<li class="file-stats">
<a href="#b5d1cb1d3cb9c086d7cac58e1d8624a63ee8f3a2">
<span class="new-file">
+
cmake/Modules/FindHTSlib.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#65feba051965d4985e4b3849bd46e64d763f3c79">
<span class="new-file">
+
cmake/Modules/GetGitVersion.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#f1f6b707e2d02d41558f0342667c1195acf43e48">
<span class="new-file">
+
cmake/Modules/LibFindMacros.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#3052d948afa8c8b79daa40febc0d69fe64caea90">
<span class="deleted-file">
โ
cmake/git-watcher.cmake
</span>
</a>
</li>
<li class="file-stats">
<a href="#cf94e14f0bccea08c47a94c516ad599d7399c638">
cmake/htslib.cmake
</a>
</li>
<li class="file-stats">
<a href="#7334a9e4496101784d55d622bc5a342e2d2266d2">
cmake/zlib.cmake
</a>
</li>
<li class="file-stats">
<a href="#7e354f6ccc4061bd68b29c924954722b8f495fda">
<span class="deleted-file">
โ
metabat_version.h.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#9b08e244de4376e9dd2d2b7a22e274783544b3e3">
runMetaBat.sh
</a>
</li>
<li class="file-stats">
<a href="#3368e88f0d1a948a77cc768c92ce163a15f8f23a">
src/BamUtils.h
</a>
</li>
<li class="file-stats">
<a href="#631c8d07f5ea23b9a9f6c57f5389dfcf94bc33b7">
src/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#4982861a7f5139278b2249bc47265fefe545add8">
src/CheckRead.hpp
</a>
</li>
<li class="file-stats">
<a href="#b9b2e86abb7b1579dd2f5f0fee180361b55548ea">
src/IOThreadBuffer.h
</a>
</li>
<li class="file-stats">
<a href="#6055031e8122edf6cfb5af46054ebd62b699ab20">
src/KseqReader.h
</a>
</li>
<li class="file-stats">
<a href="#664eb07ec88285e3111e22498548a94a467f38df">
src/OpenMP.h
</a>
</li>
<li class="file-stats">
<a href="#078999981f1a9166da615c549ae164631d0a6bdc">
src/ProgressTracker.h
</a>
</li>
<li class="file-stats">
<a href="#00cc4ed37d979907f615dfb8ee437fc22638a4c3">
src/RunningStats.h
</a>
</li>
<li class="file-stats">
<a href="#29f4bc14ad71d03e23fd42d11f84ca4471be3590">
src/SafeOfstream.hpp
</a>
</li>
<li class="file-stats">
<a href="#c45626d6a10878dfc9ab2d3c2af8b7f379cd2338">
src/contigOverlaps.cpp
</a>
</li>
<li class="file-stats">
<a href="#a560972d534d60c39d831889ceebf238c2b02600">
src/jgi_summarize_bam_contig_depths.cpp
</a>
</li>
<li class="file-stats">
<a href="#807c6153552fe38d2c373134c93cf5667a7e505f">
src/jgi_summarize_bam_contig_depths.h
</a>
</li>
<li class="file-stats">
<a href="#24df90783f16948f6b43d4740a40b6f9cce94c04">
src/metabat1.cpp
</a>
</li>
<li class="file-stats">
<a href="#43e559167d0fd07f85101cb627948dc55f443132">
src/metabat1.h
</a>
</li>
<li class="file-stats">
<a href="#ad4f13db3722e0e449ed3931be1db3f14c32a268">
src/metabat2.cpp
</a>
</li>
<li class="file-stats">
<a href="#0f40bb941375abe0474a48dd9c3e8fde097b2c5b">
src/metabat2.h
</a>
</li>
<li class="file-stats">
<a href="#316b66d250e9e19d80351bae4375a6c811175a0a">
src/ranker.h
</a>
</li>
<li class="file-stats">
<a href="#d9577b84b013e0c4f6dcf8189bbe83b18f2948db">
test/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#2d1dba06c7f4b4c2f13e05d40a391d5330c68ce4">
<span class="new-file">
+
version.h
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">
โ
<br>
<a href="https://salsa.debian.org/med-team/metabat/-/commit/dd808b2635056c0bee4086a530ecfb1310b7f3bf">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> ยท <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<span style="color: transparent; font-size: 0; display: none; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0;">
Notification message regarding https://salsa.debian.org/med-team/metabat/-/commit/dd808b2635056c0bee4086a530ecfb1310b7f3bf at 1760886215
</span>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/metabat/-/commit/dd808b2635056c0bee4086a530ecfb1310b7f3bf"}}</script>
</p>
</div>
</body>
</html>