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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/paleomix">Debian Med / paleomix</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/paleomix/-/commit/8063bf61112dff83e8046915715f15a442568ebf">8063bf61</a></strong>
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<span> by Étienne Mollier </span> <i> at 2025-11-02T22:33:53+01:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.3.10</pre>
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43 changed files:
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CHANGES.md
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docs/conf.py
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docs/installation.rst
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paleomix/__init__.py
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paleomix/atomiccmd/pprint.py
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paleomix/common/rtools.py
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paleomix/main.py
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paleomix/nodes/formats.py
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paleomix/nodes/mapdamage.py
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paleomix/pipelines/bam/config.py
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paleomix/pipelines/bam/mkfile.py
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paleomix/pipelines/bam/pipeline.py
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paleomix/pipelines/phylo/mkfile.py
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paleomix/pipelines/zonkey/build_db.py
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paleomix/pipelines/zonkey/build_mito.py
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paleomix/pipelines/zonkey/common.py
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paleomix/pipelines/zonkey/parts/mitochondria.py
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paleomix/pipelines/zonkey/parts/report.py
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paleomix/pipelines/zonkey/parts/summary.py
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paleomix/tools/cleanup.py
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paleomix/tools/coverage.py
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paleomix/tools/dupcheck.py
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paleomix/tools/gtf_to_bed.py
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paleomix/tools/rmdup_collapsed.py
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paleomix/tools/vcf_filter.py
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paleomix_environment.yaml
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setup.py
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tests/atomiccmd_test/command_test.py
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tests/tools_test/factory_test.py
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tox.ini
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