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<h3 style="margin-top: 20px; margin-bottom: 10px;">

Aaron M. Ucko pushed to branch master at <a href="https://salsa.debian.org/med-team/ncbi-tools6">Debian Med / ncbi-tools6</a>

</h3>

<h4 style="margin-top: 10px; margin-bottom: 10px;">

Commits:

</h4>

<ul>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-tools6/-/commit/493cb13f33fc379d008e498f6e7cd07c00cf37d5">493cb13f</a></strong>

<div>

<span> by Aaron M. Ucko </span> <i> at 2025-12-28T21:11:40-05:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Start work on ncbi-tools6 6.1.20170106+dfsg2-7.

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-tools6/-/commit/a903b9946d0ac73a8e4c3d9906a39ac2cf359006">a903b994</a></strong>

<div>

<span> by Aaron M. Ucko </span> <i> at 2025-12-28T22:16:08-05:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Always return a value from non-void functions (#1123553).

* biostruc/cdd/thrd*.[ch] (bwfi, cp[alr]l, cxei, salu, sgoi, slou,

  spe[al], spni, ttb0, zsc): Correct return type to void to match

  implementation and usage.

* demo/debruijn.c ([Nlm_]Main): Return 0 when not bailing.

* tools/taxblast.c (RDTaxLookupReset): Return tax_looxup, modified

  in place.

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-tools6/-/commit/9f6e8426feba25ebbeb99030ddced1b1e5256f2e">9f6e8426</a></strong>

<div>

<span> by Aaron M. Ucko </span> <i> at 2025-12-28T22:24:32-05:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/.ncbirc: [BLAST]BLASTDB=/usr/share/ncbi/data (see #1117994).

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-tools6/-/commit/f69725a804c8ca5623c81e4f62beb99d90492a20">f69725a8</a></strong>

<div>

<span> by Aaron M. Ucko </span> <i> at 2025-12-28T22:26:53-05:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.3 (routine-update)

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/ncbi-tools6/-/commit/f9dc7296833a033b3afe029f1d780c02487a0445">f9dc7296</a></strong>

<div>

<span> by Aaron M. Ucko </span> <i> at 2025-12-28T22:30:14-05:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Finalize ncbi-tools6 6.1.20170106+dfsg2-7 for unstable.

</pre>

</li>

</ul>

<h4 style="margin-top: 10px; margin-bottom: 10px;">

19 changed files:

</h4>

<ul>

<li class="file-stats">

<a href="#9af9bbd57c58a18412a350f46b7ffacf2a7bf6d9">

biostruc/cdd/thrdbwfi.c

</a>

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<li class="file-stats">

<a href="#68b92259c3e6a467ebcf191f6a6b21c130c7075d">

biostruc/cdd/thrdcpal.c

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<li class="file-stats">

<a href="#9cb6bcd8cb129344f1e5ab1aa3f30ea8a47bdfb0">

biostruc/cdd/thrdcpll.c

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<li class="file-stats">

<a href="#fc72e91ca00b090b43818130b14b315852737aae">

biostruc/cdd/thrdcprl.c

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<li class="file-stats">

<a href="#1d7f189a31abd012088f189334aea671a57f924c">

biostruc/cdd/thrdcxei.c

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<li class="file-stats">

<a href="#09f66ef4fc7fb68f325526b38e3abda49f6c4b82">

biostruc/cdd/thrddecl.h

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<li class="file-stats">

<a href="#98324300f5bd8aeff62b828e64abb1404bba0713">

biostruc/cdd/thrdsalu.c

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<li class="file-stats">

<a href="#5a805f447c436be35706a76ac618c2e62c442779">

biostruc/cdd/thrdsgoi.c

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<li class="file-stats">

<a href="#47dff468804b06c03f00f76fa0976ea72d16deed">

biostruc/cdd/thrdslou.c

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<li class="file-stats">

<a href="#23fd84d6c0f45f5bafbf3b6f1fe843bf265fdd5b">

biostruc/cdd/thrdspea.c

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<li class="file-stats">

<a href="#fa656e0276b75e9accdf3ea0e32219667e067fec">

biostruc/cdd/thrdspel.c

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<li class="file-stats">

<a href="#4b6369f06331165b2ed12cf40e458acb943120a1">

biostruc/cdd/thrdspni.c

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<li class="file-stats">

<a href="#4d2b2b92362dc29edf1c2de27782d0575876a55f">

biostruc/cdd/thrdttb0.c

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<li class="file-stats">

<a href="#ae316feae4645ca66509d2978eac96d65d9bb858">

biostruc/cdd/thrdzsc.c

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<li class="file-stats">

<a href="#0490efdf81630157a0e98acf0076bfcce9fe2058">

debian/.ncbirc

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<li class="file-stats">

<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">

debian/changelog

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<li class="file-stats">

<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

debian/control

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<a href="#a1c7e7e878c0512dcdca5c0dfc6f86880b7e4445">

demo/debruijn.c

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<li class="file-stats">

<a href="#2e5fbe7c360d676dd90f302e760844c96ad92c63">

tools/taxblast.c

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<h4 style="margin-top: 10px; margin-bottom: 10px;">

Changes:

</h4>

<li id="9af9bbd57c58a18412a350f46b7ffacf2a7bf6d9">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#9af9bbd57c58a18412a350f46b7ffacf2a7bf6d9"><strong style="font-weight: 600;">biostruc/cdd/thrdbwfi.c</strong></a>

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<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="51" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="51" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -51,7 +51,7 @@</td>

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<td class="old_line diff-line-num" data-linenumber="51" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

51

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<td class="new_line diff-line-num" data-linenumber="51" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

51

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrddecl.h></span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="52" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

52

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<td class="new_line diff-line-num" data-linenumber="52" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><math.h></span></span>

</pre></td>

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<tr class="line_holder" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

53

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<td class="new_line diff-line-num" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

53

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

</pre></td>

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<tr class="line_holder old" style="line-height: 1.6;">

<td class="old_line diff-line-num old" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

54

</td>

<td class="new_line diff-line-num old" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">float</span></span> <span class="nf" style="color: #990000; font-weight: 600;">bwfi</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Gib_Scd</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">gsp</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Tst</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">tts</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

</tr>

<tr class="line_holder new" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

54

</td>

<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">bwfi</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Gib_Scd</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">gsp</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Tst</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">tts</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

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<td class="new_line diff-line-num" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*---------------------------------------------------------*/</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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</td>

<td class="new_line diff-line-num" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* ttb:   Table holding results of Gibbs sampled threading */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* gsp:   Various control parameters for Gibb's sampling   */</span></span>

</pre></td>

</tr>

</table>

<br>

</li>

<li id="68b92259c3e6a467ebcf191f6a6b21c130c7075d">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#68b92259c3e6a467ebcf191f6a6b21c130c7075d"><strong style="font-weight: 600;">biostruc/cdd/thrdcpal.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -62,7 +62,7 @@</td>

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<td class="old_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* that the same reference state sum may be used for core segment aligment */</span></span>

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<td class="old_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* location sampling. */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">cpal</span><span class="p">(</span><span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

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<tr class="line_holder new" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">cpal</span><span class="p">(</span><span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*-------------------------------------------------------*/</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* pmf:  Potential of mean force as a 3-d lookup table   */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cpr:  Contacts by segment, largest possible set       */</span></span>

</pre></td>

</tr>

</table>

<br>

</li>

<li id="9cb6bcd8cb129344f1e5ab1aa3f30ea8a47bdfb0">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#9cb6bcd8cb129344f1e5ab1aa3f30ea8a47bdfb0"><strong style="font-weight: 600;">biostruc/cdd/thrdcpll.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -57,7 +57,7 @@</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* n- or c-terminal offsets of a segment.  They contain pointers to the */</span></span>

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<td class="old_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* energies of each contact, as well as distance intervals.  */</span></span>

</pre></td>

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<td class="new_line diff-line-num" data-linenumber="59" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="60" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="60" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">cpll</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span></span>

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<td class="old_line diff-line-num new" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="60" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">cpll</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span></span>

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<td class="old_line diff-line-num" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">         <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*-----------------------------------------------------*/</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cdf:  Core segment locations and loop length limits */</span></span>

</pre></td>

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<br>

</li>

<li id="fc72e91ca00b090b43818130b14b315852737aae">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#fc72e91ca00b090b43818130b14b315852737aae"><strong style="font-weight: 600;">biostruc/cdd/thrdcprl.c</strong></a>

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -58,7 +58,7 @@</td>

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<td class="old_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* similar list.  Organize residue-fixed environment contacts as a list of */</span></span>

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<td class="old_line diff-line-num" data-linenumber="59" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="59" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* indices and types. */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">cprl</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num new" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">cprl</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*--------------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* mtf:  Contact matrices defining the folding motif      */</span></span>

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<td class="old_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cdf:  contains min/max segment locations               */</span></span>

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<br>

</li>

<li id="1d7f189a31abd012088f189334aea671a57f924c">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#1d7f189a31abd012088f189334aea671a57f924c"><strong style="font-weight: 600;">biostruc/cdd/thrdcxei.c</strong></a>

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<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -67,7 +67,8 @@</td>

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<td class="new_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* side-chain to fixed-residue contacts are stored in cxe.  Pairwise and */</span></span>

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<td class="old_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* hydrophobic components of the potential are included in the sums. */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="70" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="70" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="nf" style="color: #990000; font-weight: 600;">cxei</span><span class="p">(</span><span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Cxe</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cxe</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num new" data-linenumber="71" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="70" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">void</span> <span class="nf" style="color: #990000; font-weight: 600;">cxei</span><span class="p">(</span><span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="old_line diff-line-num new" data-linenumber="71" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="71" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">          <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Cxe</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cxe</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num" data-linenumber="72" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*--------------------------------------------------------*/</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* spn:  Partial sums of contact counts by segment pair   */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* spc:  Residue type composition of current threaded seq */</span></span>

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<br>

</li>

<li id="09f66ef4fc7fb68f325526b38e3abda49f6c4b82">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#09f66ef4fc7fb68f325526b38e3abda49f6c4b82"><strong style="font-weight: 600;">biostruc/cdd/thrddecl.h</strong></a>

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -94,11 +94,11 @@ int atd(Fld_Mtf* mtf, Cor_Def* cdf, Qry_Seq* qsq, Rcx_Ptl* pmf,</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">        <span class="n" style="color: #333333;">Gib_Scd</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">gsp</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">float</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">trg</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">zscs</span><span class="p">,</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">        <span class="kt" style="color: #445588; font-weight: 600;">double</span> <span class="n" style="color: #333333;">ScalingFactor</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">float</span> <span class="n" style="color: #333333;">PSSM_Weight</span><span class="p">);</span></span>

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<td class="new_line diff-line-num old" data-linenumber="97" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">cprl</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">);</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">cprl</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">);</span></span>

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<td class="new_line diff-line-num old" data-linenumber="99" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">ttb0</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">);</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">ttb0</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">);</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">sgoi</span><span class="p">(</span><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">is</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">it</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Ord</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sgo</span><span class="p">);</span></span>

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<td class="new_line diff-line-num new" data-linenumber="101" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">sgoi</span><span class="p">(</span><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">is</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">it</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Ord</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sgo</span><span class="p">);</span></span>

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<td class="new_line diff-line-num" data-linenumber="103" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">slo0</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mn</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mx</span><span class="p">);</span></span>

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="112" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -112,43 +112,43 @@ int sal0(Cor_Def* cdf, Qry_Seq* qsq, Cur_Loc* sli, Cur_Aln* sai,</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">spci</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">);</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">spni</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">);</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">spni</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">);</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="117" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

117

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<td class="new_line diff-line-num old" data-linenumber="117" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">cxei</span><span class="p">(</span><span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Cxe</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cxe</span><span class="p">);</span></span>

</pre></td>

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<td class="old_line diff-line-num new" data-linenumber="118" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="117" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">cxei</span><span class="p">(</span><span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Cxe</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cxe</span><span class="p">);</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="119" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="119" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">cpll</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">);</span></span>

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<td class="new_line diff-line-num new" data-linenumber="119" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">cpll</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="idiff left right addition" style="background-color: #c7f0d2;"> </span><span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">);</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">spel</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span></span>

</pre></td>

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<td class="new_line diff-line-num old" data-linenumber="122" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">);</span></span>

</pre></td>

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<td class="new_line diff-line-num new" data-linenumber="122" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">spel</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span></span>

</pre></td>

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<td class="old_line diff-line-num new" data-linenumber="124" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="123" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="idiff left right addition" style="background-color: #c7f0d2;"> </span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">);</span></span>

</pre></td>

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<td class="new_line diff-line-num" data-linenumber="124" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num" data-linenumber="125" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="125" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ttbi</span><span class="p">(</span><span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">tdg</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="126" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="126" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">nrs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">o</span><span class="p">);</span></span>

</pre></td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="128" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="128" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">cpal</span><span class="p">(</span><span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">);</span></span>

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<td class="new_line diff-line-num new" data-linenumber="128" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">cpal</span><span class="p">(</span><span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">);</span></span>

</pre></td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">spea</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

</pre></td>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">h</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">);</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">spea</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="idiff left right addition" style="background-color: #c7f0d2;"> </span><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">h</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">);</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">salr</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mn</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mx</span><span class="p">);</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">salu</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">al</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">);</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">salu</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">algs</span><span class="p">(</span><span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">tm</span><span class="p">);</span></span>

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<td class="new_line diff-line-num" data-linenumber="141" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">slor</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mn</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333333;">mx</span><span class="p">);</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="n" style="color: #333333;">slou</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">of</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">      <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">);</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">slou</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">of</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">      <span class="idiff left right addition" style="background-color: #c7f0d2;">  </span><span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">);</span></span>

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<td class="old_line diff-line-num old" data-linenumber="147" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="147" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">float</span></span> <span class="n" style="color: #333333;">bwfi</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Gib_Scd</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">gsp</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Tst</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">tts</span><span class="p">);</span></span>

</pre></td>

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<td class="old_line diff-line-num new" data-linenumber="148" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="147" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">bwfi</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Gib_Scd</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">gsp</span><span class="p">,</span> <span class="n" style="color: #333333;">Thd_Tst</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">tts</span><span class="p">);</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="149" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="149" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">float</span></span> <span class="n" style="color: #333333;">zsc</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span></span>

</pre></td>

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<td class="old_line diff-line-num old" data-linenumber="150" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="149" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="idiff left right deletion" style="background-color: #fac5cd;"> </span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span></span>

</pre></td>

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<td class="old_line diff-line-num old" data-linenumber="151" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="149" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="idiff left right deletion" style="background-color: #fac5cd;"> </span><span class="kt" style="color: #445588; font-weight: 600;">double</span> <span class="n" style="color: #333333;">ScalingFactor</span><span class="p">);</span></span>

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<td class="old_line diff-line-num new" data-linenumber="152" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="149" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="n" style="color: #333333;">zsc</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span></span>

</pre></td>

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<td class="old_line diff-line-num new" data-linenumber="152" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="150" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span></span>

</pre></td>

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<td class="new_line diff-line-num new" data-linenumber="151" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">double</span> <span class="n" style="color: #333333;">ScalingFactor</span><span class="p">);</span></span>

</pre></td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<br>

</li>

<li id="98324300f5bd8aeff62b828e64abb1404bba0713">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#98324300f5bd8aeff62b828e64abb1404bba0713"><strong style="font-weight: 600;">biostruc/cdd/thrdsalu.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="52" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="52" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -52,7 +52,8 @@</td>

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<td class="new_line diff-line-num" data-linenumber="52" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrdatd.h></span></span>

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<td class="old_line diff-line-num" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrddecl.h></span></span>

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<td class="old_line diff-line-num old" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="nf" style="color: #990000; font-weight: 600;">salu</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">al</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num new" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">void</span> <span class="nf" style="color: #990000; font-weight: 600;">salu</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">al</span><span class="p">,</span></span>

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<td class="old_line diff-line-num new" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">          <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*-------------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cdf:  Core segment locations and loop length limits   */</span></span>

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<td class="old_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="59" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* qsq:  Sequence to thread with alignment contraints    */</span></span>

</pre></td>

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<br>

</li>

<li id="5a805f447c436be35706a76ac618c2e62c442779">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#5a805f447c436be35706a76ac618c2e62c442779"><strong style="font-weight: 600;">biostruc/cdd/thrdsgoi.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -52,7 +52,7 @@</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrdatd.h></span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrddecl.h></span></span>

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<td class="new_line diff-line-num old" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">sgoi</span><span class="p">(</span><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">is</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">it</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Ord</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sgo</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num new" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">sgoi</span><span class="p">(</span><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">is</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">it</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Ord</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sgo</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*----------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* is:   Code to determine order of segment sampling  */</span></span>

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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* it:   Code to determine order of terminus sampling */</span></span>

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<li id="47dff468804b06c03f00f76fa0976ea72d16deed">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#47dff468804b06c03f00f76fa0976ea72d16deed"><strong style="font-weight: 600;">biostruc/cdd/thrdslou.c</strong></a>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrdatd.h></span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cp" style="color: #999999; font-weight: 600;">#include</span> <span class="cpf"><thrddecl.h></span></span>

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">slou</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">of</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="new_line diff-line-num new" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">slou</span><span class="p">(</span><span class="n" style="color: #333333;">Fld_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">mtf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">ct</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">of</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="old_line diff-line-num" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">    <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*--------------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* mtf:  Contact matrices defining the folding motif      */</span></span>

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<br>

</li>

<li id="23fd84d6c0f45f5bafbf3b6f1fe843bf265fdd5b">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#23fd84d6c0f45f5bafbf3b6f1fe843bf265fdd5b"><strong style="font-weight: 600;">biostruc/cdd/thrdspea.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -64,8 +64,8 @@</td>

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<td class="old_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* components, and side-chain to fixed-residue pairwise and hydrohobic */</span></span>

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<td class="new_line diff-line-num" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* components. */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">spea</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="new_line diff-line-num old" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">h</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">spea</span><span class="p">(</span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Als</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpa</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span></span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="idiff left right addition" style="background-color: #c7f0d2;"> </span><span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">h</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num" data-linenumber="69" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="69" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*--------------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="70" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

70

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<td class="new_line diff-line-num" data-linenumber="70" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cpa:  Contacts by segment, given current location      */</span></span>

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<td class="old_line diff-line-num" data-linenumber="71" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

71

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<td class="new_line diff-line-num" data-linenumber="71" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* sli:  Current locations of core segments in the motif  */</span></span>

</pre></td>

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<br>

</li>

<li id="fa656e0276b75e9accdf3ea0e32219667e067fec">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#fa656e0276b75e9accdf3ea0e32219667e067fec"><strong style="font-weight: 600;">biostruc/cdd/thrdspel.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -62,8 +62,8 @@</td>

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<td class="old_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* of side-chain to peptide contact potential.  The "profile" term contains */</span></span>

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<td class="old_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="63" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* only the sum of side-chain to fixed-residue contact potential. */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">spel</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span></span>

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<td class="old_line diff-line-num old" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num new" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">spel</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">cs</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span></span>

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<td class="old_line diff-line-num new" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="idiff left right addition" style="background-color: #c7f0d2;"> </span><span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Cmp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spc</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="new_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*--------------------------------------------------------*/</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cpl:  Contacts by segment, given current location      */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="69" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="69" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* sai:  Current alignment of query sequence with core    */</span></span>

</pre></td>

</tr>

</table>

<br>

</li>

<li id="4b6369f06331165b2ed12cf40e458acb943120a1">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#4b6369f06331165b2ed12cf40e458acb943120a1"><strong style="font-weight: 600;">biostruc/cdd/thrdspni.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -53,7 +53,7 @@</td>

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<td class="old_line diff-line-num" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* Sum contact counts for the n-th core segment. Use these sums to recompute */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

54

</td>

<td class="new_line diff-line-num" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* total contact counts. */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">spni</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

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<tr class="line_holder new" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">spni</span><span class="p">(</span><span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpl</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Loc</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sli</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">int</span> <span class="n" style="color: #333333;">n</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Nsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spn</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="57" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*-------------------------------------------------------*/</span></span>

</pre></td>

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<tr class="line_holder" style="line-height: 1.6;">

<td class="old_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

58

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<td class="new_line diff-line-num" data-linenumber="58" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* cpl:  Contacts by segment, given current alignment    */</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="59" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="59" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* sli:  Current locations of core segments in the motif */</span></span>

</pre></td>

</tr>

</table>

<br>

</li>

<li id="4d2b2b92362dc29edf1c2de27782d0575876a55f">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#4d2b2b92362dc29edf1c2de27782d0575876a55f"><strong style="font-weight: 600;">biostruc/cdd/thrdttb0.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -50,7 +50,7 @@</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* Initialize thread table, a linked list containing the minimum energy */</span></span>

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<td class="old_line diff-line-num" data-linenumber="51" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* threads found in sampling */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">int</span></span> <span class="nf" style="color: #990000; font-weight: 600;">ttb0</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num new" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="53" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

53

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">ttb0</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">)</span> <span class="p">{</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="54" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*---------------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

55

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<td class="new_line diff-line-num" data-linenumber="55" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

55

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* ttb:  Tables to hold Results of Gibbs sampled threading */</span></span>

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<td class="old_line diff-line-num" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="56" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*---------------------------------------------------------*/</span></span>

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<br>

</li>

<li id="ae316feae4645ca66509d2978eac96d65d9bb858">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#ae316feae4645ca66509d2978eac96d65d9bb858"><strong style="font-weight: 600;">biostruc/cdd/thrdzsc.c</strong></a>

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<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -61,8 +61,8 @@</td>

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<td class="new_line diff-line-num" data-linenumber="61" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* Sorts the stored energies in descending order, picks up the alignment.</span></span>

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<td class="new_line diff-line-num" data-linenumber="62" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">Calculates the Z-score by shuffling the aliged region 10000 times. */</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num old" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right deletion" style="background-color: #fac5cd;">float</span></span> <span class="nf" style="color: #990000; font-weight: 600;">zsc</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span></span>

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<td class="new_line diff-line-num old" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">         <span class="idiff left right deletion" style="background-color: #fac5cd;"> </span><span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">double</span> <span class="n" style="color: #333333;">ScalingFactor</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="64" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;"><span class="idiff left right addition" style="background-color: #c7f0d2;">void</span></span> <span class="nf" style="color: #990000; font-weight: 600;">zsc</span><span class="p">(</span><span class="n" style="color: #333333;">Thd_Tbl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">ttb</span><span class="p">,</span> <span class="n" style="color: #333333;">Seq_Mtf</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">psm</span><span class="p">,</span> <span class="n" style="color: #333333;">Qry_Seq</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">qsq</span><span class="p">,</span> <span class="n" style="color: #333333;">Cxl_Los</span><span class="o" style="font-weight: 600;">**</span> <span class="n" style="color: #333333;">cpr</span><span class="p">,</span> <span class="n" style="color: #333333;">Cor_Def</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">cdf</span><span class="p">,</span></span>

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<td class="old_line diff-line-num new" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="65" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">         <span class="n" style="color: #333333;">Rcx_Ptl</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pmf</span><span class="p">,</span> <span class="n" style="color: #333333;">Seg_Gsm</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">spe</span><span class="p">,</span> <span class="n" style="color: #333333;">Cur_Aln</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">sai</span><span class="p">,</span> <span class="n" style="color: #333333;">Rnd_Smp</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333333;">pvl</span><span class="p">,</span> <span class="kt" style="color: #445588; font-weight: 600;">double</span> <span class="n" style="color: #333333;">ScalingFactor</span><span class="p">)</span> <span class="p">{</span></span>

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<td class="old_line diff-line-num" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="66" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/*---------------------------------------------------------*/</span></span>

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<td class="old_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="67" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* ttb:  Tables to hold Results of Gibbs sampled threading */</span></span>

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<td class="old_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

68

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<td class="new_line diff-line-num" data-linenumber="68" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="cm" style="color: #999988; font-style: italic;">/* qsq:  Sequence to thread with alignment contraints      */</span></span>

</pre></td>

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<br>

</li>

<li id="0490efdf81630157a0e98acf0076bfcce9fe2058">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#0490efdf81630157a0e98acf0076bfcce9fe2058"><strong style="font-weight: 600;">debian/.ncbirc</strong></a>

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -73,4 +73,5 @@ DISPLAY=Courier,10</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">FETCHED=Times,14</span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">[BLAST]</span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">BLASTDB=/usr/share/ncbi/data</span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">IGDATA=/usr/share/ncbi/igblast</span></pre></td>

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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong style="font-weight: 600;">debian/changelog</strong></a>

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1

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">ncbi-tools6 (6.1.20170106+dfsg2-7) unstable; urgency=medium</span>

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2

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"></span>

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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

3

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">  * debian/.ncbirc: Belatedly set [BLAST]BLASTDB to /usr/share/ncbi/data.</span>

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<td class="new_line diff-line-num new" data-linenumber="4" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

4

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">    (See #1117994.)</span>

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<td class="new_line diff-line-num new" data-linenumber="5" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

5

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">  * Always return a value from non-void functions.  (Closes: #1123553.)</span>

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<td class="old_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="6" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

6

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">    - biostruc/cdd/thrd*.[ch] (bwfi, cp[alr]l, cxei, salu, sgoi, slou,</span>

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<td class="new_line diff-line-num new" data-linenumber="7" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

7

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">      spe[al], spni, ttb0, zsc): Correct return type to void to match</span>

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<td class="old_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="8" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

8

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">      implementation and usage.</span>

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<td class="old_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="9" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

9

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">    - demo/debruijn.c ([Nlm_]Main): Return 0 when not bailing.</span>

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<td class="old_line diff-line-num new" data-linenumber="1" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="10" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

10

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">    - tools/taxblast.c (RDTaxLookupReset): Return tax_looxup, modified</span>

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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">      in place.</span>

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<td class="new_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">  * Standards-Version: 4.7.3 (routine-update)</span>

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"></span>

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<td class="new_line diff-line-num new" data-linenumber="14" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org>  Sun, 28 Dec 2025 22:30:14 -0500</span>

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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">  * Fix or work around build-order assumptions caught by</span>

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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong style="font-weight: 600;">debian/control</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -13,7 +13,7 @@ Build-Depends-Arch: csh | c-shell,</td>

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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">                    libxmu-dev</span>

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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">Build-Depends-Indep: icoutils,</span>

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<td class="old_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="15" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">                     imagemagick</span>

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<td class="old_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="new_line diff-line-num old" data-linenumber="16" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="plaintext">Standards-Version: 4.7.<span class="idiff left right deletion" style="background-color: #fac5cd;">2</span></span>

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<td class="old_line diff-line-num new" data-linenumber="17" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="new_line diff-line-num new" data-linenumber="16" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">Standards-Version: 4.7.<span class="idiff left right addition" style="background-color: #c7f0d2;">3</span></span>

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<td class="old_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="17" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/ncbi-tools6</span>

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<td class="old_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="18" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/ncbi-tools6.git</span>

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<td class="old_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="new_line diff-line-num" data-linenumber="19" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/</span>

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<li id="a1c7e7e878c0512dcdca5c0dfc6f86880b7e4445">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#a1c7e7e878c0512dcdca5c0dfc6f86880b7e4445"><strong style="font-weight: 600;">demo/debruijn.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

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<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -106,4 +106,6 @@ Int2 Main(void)</td>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">  <span class="n" style="color: #333333;">puts</span><span class="p">(</span><span class="n" style="color: #333333;">output</span><span class="p">);</span></span>

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">  <span class="n" style="color: #333333;">free</span><span class="p">(</span><span class="n" style="color: #333333;">output</span><span class="p">);</span></span>

</pre></td>

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<td class="old_line diff-line-num new" data-linenumber="109" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

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109

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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c"></span>

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<td class="old_line diff-line-num new" data-linenumber="109" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="110" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

110

</td>

<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">  <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #009999;">0</span><span class="p">;</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="109" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

109

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<td class="new_line diff-line-num" data-linenumber="111" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

111

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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="p">}</span></span></pre></td>

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</table>

<br>

</li>

<li id="2e5fbe7c360d676dd90f302e760844c96ad92c63">

<a href="https://salsa.debian.org/med-team/ncbi-tools6/-/compare/0041f9d77d0748c3233a70fbdf7863f0393da463...f9dc7296833a033b3afe029f1d780c02487a0445#2e5fbe7c360d676dd90f302e760844c96ad92c63"><strong style="font-weight: 600;">tools/taxblast.c</strong></a>

<hr style="overflow: hidden; border: 1px solid #dcdcde;">

<table class="code white" style="border-spacing: 0; border-collapse: collapse; width: auto; font-family: monospace; font-size: 90%;" bgcolor="#ffffff" width="100%" cellpadding="0" cellspacing="0">

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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2046" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2046" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>

<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -2046,7 +2046,8 @@ RDBTaxLookupPtr RDTaxLookupReset(RDBTaxLookupPtr tax_lookup)</td>

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<td class="old_line diff-line-num" data-linenumber="2046" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2046

</td>

<td class="new_line diff-line-num" data-linenumber="2046" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2046

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">        <span class="p">}</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="2047" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2047

</td>

<td class="new_line diff-line-num" data-linenumber="2047" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2047

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">        <span class="n" style="color: #333333;">tax_lookup</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333333;">tax_array</span><span class="p">[</span><span class="n" style="color: #333333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333333;">tnames</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="2048" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2048

</td>

<td class="new_line diff-line-num" data-linenumber="2048" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2048

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c">    <span class="p">}</span></span>

</pre></td>

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<td class="old_line diff-line-num old" data-linenumber="2049" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

2049

</td>

<td class="new_line diff-line-num old" data-linenumber="2049" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">

</td>

<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="c">      <span class="n" style="color: #333333;">tax_lookup</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333333;">taxids_in_db</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #009999;">0</span><span class="p">;</span> </span>

</pre></td>

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<tr class="line_holder new" style="line-height: 1.6;">

<td class="old_line diff-line-num new" data-linenumber="2050" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="2049" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

2049

</td>

<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">      <span class="n" style="color: #333333;">tax_lookup</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333333;">taxids_in_db</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #009999;">0</span><span class="p">;</span></span>

</pre></td>

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<td class="old_line diff-line-num new" data-linenumber="2050" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

</td>

<td class="new_line diff-line-num new" data-linenumber="2050" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">

2050

</td>

<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="c">      <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333333;">tax_lookup</span><span class="p">;</span></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="2050" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2050

</td>

<td class="new_line diff-line-num" data-linenumber="2051" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2051

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="p">}</span></span>

</pre></td>

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2051

</td>

<td class="new_line diff-line-num" data-linenumber="2052" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2052

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"></span>

</pre></td>

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<td class="old_line diff-line-num" data-linenumber="2052" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2052

</td>

<td class="new_line diff-line-num" data-linenumber="2053" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">

2053

</td>

<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="c"><span class="kt" style="color: #445588; font-weight: 600;">void</span> <span class="nf" style="color: #990000; font-weight: 600;">RDTaxLookupClose</span><span class="p">(</span><span class="n" style="color: #333333;">RDBTaxLookupPtr</span> <span class="n" style="color: #333333;">tax_lookup</span><span class="p">)</span></span>

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