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<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">

Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/seqan2">Debian Med / seqan2</a>

</h3>

<h4 style="margin-top: 10px; margin-bottom: 10px;">

Commits:

</h4>

<ul>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/b506e8bb6d40d611650096d2ad11c21b36c96dd7">b506e8bb</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2024-08-03T13:24:55+02:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.0~rc1+dfsg</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/841d856a472bdfdde5c24c4cfa0cff4b3847eac8">841d856a</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2024-08-16T13:03:51+02:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.0~rc2+dfsg</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/b2c20078a7555fa067628fe1df07e4f3060ce779">b2c20078</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2024-11-23T00:18:12+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.0~rc3+dfsg</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/65483141693cf73ff6cce11016b92bcc76d64c95">65483141</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:10:47+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: remove workaround for archs we no longer build for.

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/39565071bc62722f89cecd5170949a083d09db69">39565071</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:11:06+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: drop build-dep on fakeroot

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/b7a95db9128cf58096c3b43cc4b66c0c657c3b92">b7a95db9</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:15:56+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/9a96552e60128d11ec79e1193e60a439e37c3cdb">9a96552e</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:16:00+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 2.5.1</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/0250cca04da300b4084be325a89e195bdf371cc5">0250cca0</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:16:40+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/2.5.1'

Update to upstream version '2.5.1'

with Debian dir 495852babd0a85dd7867a6aa04d5d98570e67eac</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/3b0eaf337a40885eeb329ff9488ce7defd6b27e9">3b0eaf33</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:16:42+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.3 (routine-update)

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/a1fddb2e8bd6b979ac97979c3ca2f7ac556f7334">a1fddb2e</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:17:05+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debputy lint --auto-fix (routine-update)

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/7366d7b2592d09a792646985a6483e8e72b5fa6d">7366d7b2</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:35:23+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: many patches upstreamed and removed.

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/cdc3048a57eaa4d80d9efdf984f891eeba21600f">cdc3048a</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:35:27+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: configure with -DALIGN_SIMD_TEST=FALSE as per upstream

to avoid compiling a 256+ level template in debug mode which takes up too much memory.

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/b32dc42556ad14a8ea73b68fb9d763372315ad50">b32dc425</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:35:27+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debian/libseqan2-dev.docs: README.rst→README.md

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/50a3c9ee9c5d34d55e6a7ce2573173bc72912179">50a3c9ee</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:38:07+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: According to upstream, solution_online_search_finder.cpp works again, so stop deleting that test

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/bef3578600a5720cb69c51351c00b0e5f05eaea2">bef35786</a></strong>

<div>

<span> by Enrico Seiler </span> <i> at 2026-01-07T12:40:30+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/control: remove unneeded deps

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/2218bfb2f2fcbe1fd34f578e18a3ce432d5fe881">2218bfb2</a></strong>

<div>

<span> by Enrico Seiler </span> <i> at 2026-01-07T12:42:53+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: strip path from seqan-apps, special options for salsa

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/6778bb8dcf625741b8cbcadaefe7636bbbb5a0e2">6778bb8d</a></strong>

<div>

<span> by Enrico Seiler </span> <i> at 2026-01-07T12:43:58+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/salsa-ci.yml: Skip arm64 crossbuild and reprotest, add env var for use by d/rules

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/e6dc61489784539bf5c0f1c77f05272cc136457d">e6dc6148</a></strong>

<div>

<span> by Enrico Seiler </span> <i> at 2026-01-07T12:44:30+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: refresh patches

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/4fca4860b43e492b0dd6ba24d603b6215c7ec4cf">4fca4860</a></strong>

<div>

<span> by Enrico Seiler </span> <i> at 2026-01-07T12:51:54+01:00 </i>

</div>

<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/patches: remove forwarded patches

</pre>

</li>

<li>

<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/22a01ab314e3a99e17ca5d77bf79254a52d08b94">22a01ab3</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T12:51:54+01:00 </i>

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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/upstream/metadata: link to upstream's git repo

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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/seqan2/-/commit/f5d29b0235262d65271a5570f1fe6474bdbfeb93">f5d29b02</a></strong>

<div>

<span> by Michael R. Crusoe </span> <i> at 2026-01-07T13:04:50+01:00 </i>

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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: re-enable maximal parallel building.

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