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<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Tomasz Buchert pushed to branch master at <a href="https://salsa.debian.org/med-team/mothur">Debian Med / mothur</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/73ec5ffb65e5f18659b3e3fa4c29bcb7d983d09b">73ec5ffb</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T19:58:24+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.48.2</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/66d5609064ba17b0b650ed2b5245e4c853357e7b">66d56090</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T19:59:54+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.48.2'
Update to upstream version '1.48.2'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/b8b153f2995331f9005f5a22c4a96ab007bc9712">b8b153f2</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:00:05+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.48.3</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/e6e05b34c727255413a12b9309bb6d104a2e62b4">e6e05b34</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:01:33+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.48.3'
Update to upstream version '1.48.3'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/630b461714ad55b9dfde60af6b3b7e580f74dcb8">630b4617</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:01:43+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.48.4</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/9eeda6c5ccd2a70e4926b909da4fda0e7ed03780">9eeda6c5</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:03:13+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.48.4'
Update to upstream version '1.48.4'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/2f5d23c02fc2b5787870e5192e741fb31dfb6418">2f5d23c0</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:03:28+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.48.5</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/87d987d3a0fd0f8e2be60bff3c2b377ec399b170">87d987d3</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:03:33+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.48.5'
Update to upstream version '1.48.5'
with Debian dir e53e4195cf301a52b7e7784abeaf56fb829ea285</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/a6d0d3561494958eea765809da03f49cbe4f1509">a6d0d356</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T20:08:33+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>refresh patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/mothur/-/commit/5fff662d08c5cc3a98eb6aeac2a6b6c019c25b46">5fff662d</a></strong>
<div>
<span> by Tomasz Buchert </span> <i> at 2026-02-07T21:29:43+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>release
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
56 changed files:
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.gitignore
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External_Libraries_INSTALL
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Makefile
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Mothur.xcodeproj/project.pbxproj
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TestMothur/dataset.cpp
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TestMothur/testcontainers/testsharedrabundfloatvector.hpp
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TestMothur/testsubsample.hpp
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Ubuntu_20_Build.txt
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debian/changelog
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debian/control
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debian/patches/0002-Fix-include.patch
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debian/patches/add-hardening-opts.patch
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debian/patches/c++14.patch
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debian/patches/fix_linking.patch
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source/commands/aligncommand.cpp
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source/commands/chimerauchimecommand.cpp
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source/commands/chimeravsearchcommand.cpp
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source/commands/clearcutcommand.cpp
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source/commands/clustercommand.cpp
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source/commands/distsharedcommand.h
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source/commands/getseqscommand.cpp
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source/commands/lefsecommand.cpp
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source/commands/makeclrcommand.cpp
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source/commands/makecontigscommand.cpp
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source/commands/pcrseqscommand.cpp
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source/datastructures/counttable.cpp
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source/datastructures/optidata.cpp
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source/datastructures/optidata.hpp
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source/linearalgebra.cpp
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source/mothur.h
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