<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: rgba(255,255,255,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Étienne Mollier pushed to branch upstream at <a href="https://salsa.debian.org/med-team/filtlong">Debian Med / filtlong</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/filtlong/-/commit/90ab75fa29bd509498905a05c26acb93a9a7b4a0">90ab75fa</a></strong>
<div>
<span> by Étienne Mollier </span> <i> at 2026-02-28T12:07:02+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.3.1</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
33 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#899ce9c202bf7bb5480e72836c3edc773c9c4244">
<span class="new-file">
+
.github/workflows/ci.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#37c9b8872622557e316019a450fffe30e3bb8964">
<span class="new-file">
+
misc/example_commands_0_unfiltered-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#a19b792c4ffcbe778c3337b20ad7c114add44ebd">
<span class="new-file">
+
misc/example_commands_1_without_reference-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#407bd20a58c9cbbff4be96e4a71c52bac0848ae6">
<span class="new-file">
+
misc/example_commands_2_with_reference-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#f47478ebf725c706ce300bda91f00d0a60017c87">
<span class="new-file">
+
misc/example_commands_3_trim_split-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#e2df91f1380a54757b4cbee10a53c63ae3b6f829">
<span class="new-file">
+
misc/example_commands_4_length_priority-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#2eb584491537ebd7c4a2393aca4d2d4944a7b7e1">
<span class="new-file">
+
misc/example_commands_5_quality_priority-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#65b6e0ff5b8fe13cd2a96c5b4d63091d6adbcda5">
<span class="new-file">
+
misc/filtlong_logo-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#342291276bacc7e732126a2cbad27b760374caee">
misc/filtlong_logo.png
</a>
</li>
<li class="file-stats">
<a href="#68677fcad7d1fb5d99b26dc275b13014c3cd1404">
<span class="new-file">
+
misc/score_equation-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#4fc2959f6114ef05d01efa41569a166264b6edf7">
misc/score_equation.png
</a>
</li>
<li class="file-stats">
<a href="#28414d05d683bdb206334489ec76ec9e665aa238">
<span class="new-file">
+
misc/split_example_1-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#7b73f3d30afbacbf73c5b9f7532fb59b8052f82a">
misc/split_example_1.png
</a>
</li>
<li class="file-stats">
<a href="#11122e397b8f1f780337b7e0a7566602644cc31a">
<span class="new-file">
+
misc/split_example_2-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#ab9bc4eb613fca3cde0f0a8d5fc015ea6c2ababf">
misc/split_example_2.png
</a>
</li>
<li class="file-stats">
<a href="#e8c6b2bd61d15227e7702eeba817b0f056412bf1">
<span class="new-file">
+
misc/trim_example_1-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#6b48a46e88e88085848e7fc71c58451d81ba95ea">
misc/trim_example_1.png
</a>
</li>
<li class="file-stats">
<a href="#4d97a4d4c0e3a269695997cffa4e584589e889fc">
<span class="new-file">
+
misc/trim_example_2-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#88f2c6f37211059cad83876055846e889410b447">
misc/trim_example_2.png
</a>
</li>
<li class="file-stats">
<a href="#53cfc8f3957c7db483db414204bc73f317799284">
<span class="new-file">
+
misc/trim_split_example_real_read-dark.png
</span>
</a>
</li>
<li class="file-stats">
<a href="#a49ee7970b14306d6fba50c7464fc5e725a176d8">
misc/trim_split_example_real_read.png
</a>
</li>
<li class="file-stats">
<a href="#bfd42b091bfb8273e08b1987652a9b2a5bea3cfb">
<span class="deleted-file">
−
scripts/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#9600c7f8a37269b653129d7ba2379ad83b4b2f54">
<span class="deleted-file">
−
scripts/histogram.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#00f0081fdcc29acac8e618c176f91ea25c7b3e6d">
<span class="deleted-file">
−
scripts/read_info_histograms.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#73c762a7efe6bf6111f932ffc25fd22717017144">
src/arguments.cpp
</a>
</li>
<li class="file-stats">
<a href="#bcdb375d30dc5d528a02896b66856d5cbcd4d898">
src/arguments.h
</a>
</li>
<li class="file-stats">
<a href="#3ec990742f90852f9472bc8d7d4023e06a6429c5">
src/kmers.cpp
</a>
</li>
<li class="file-stats">
<a href="#7f3d6679b4c2b6a8e8ebf5af62a87feaf0e59bcf">
src/kmers.h
</a>
</li>
<li class="file-stats">
<a href="#775c43606212921faeaefec26f904a2e14aeffc5">
src/kseq.h
</a>
</li>
<li class="file-stats">
<a href="#b958235ee8db37bcaceda04b6d55553b450c2db4">
src/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#ac558e5d5e11380871146f7b352a56f3be7cd3a6">
test/test_error_messages.py
</a>
</li>
<li class="file-stats">
<a href="#d333a70ada0b56ad3d52ebdea4b460b02d7cac42">
<span class="new-file">
+
test/test_unit_suffixes.py
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">
—
<br>
<a href="https://salsa.debian.org/med-team/filtlong/-/commit/90ab75fa29bd509498905a05c26acb93a9a7b4a0">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<span style="color: transparent; font-size: 0; display: none; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0;">
Notification message regarding https://salsa.debian.org/med-team/filtlong/-/commit/90ab75fa29bd509498905a05c26acb93a9a7b4a0 at 1772277396
</span>
<script type="application/ld+json">{"@context":"http://schema.org","@type":"EmailMessage","action":{"@type":"ViewAction","name":"View Commit","url":"https://salsa.debian.org/med-team/filtlong/-/commit/90ab75fa29bd509498905a05c26acb93a9a7b4a0"}}</script>
</p>
</div>
</body>
</html>