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Michael R. Crusoe pushed to branch debian-v7 at <a href="https://salsa.debian.org/med-team/snakemake">Debian Med / snakemake</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/snakemake/-/commit/f5ee9a60b8086da55b118761fbe1b90761f534d2">f5ee9a60</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2026-04-27T10:25:04+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/rules: skip the rpy2 using test.
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2 changed files:
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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debian/rules
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Changes:
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/snakemake/-/commit/f5ee9a60b8086da55b118761fbe1b90761f534d2#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong style="font-weight: 600;">debian/changelog</strong></a>
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1
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">snakemake (7.32.4-11) unstable; urgency=medium</span>
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"></span>
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<td class="new_line diff-line-num new" data-linenumber="3" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
3
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"> * Team upload.</span>
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4
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"> * d/rules: skip the rpy2 using test.</span>
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"></span>
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6
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"> -- Michael R. Crusoe <crusoe@debian.org> Mon, 27 Apr 2026 09:57:45 +0200</span>
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">snakemake (7.32.4-10) unstable; urgency=medium</span>
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"> * Team upload.</span>
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<a href="https://salsa.debian.org/med-team/snakemake/-/commit/f5ee9a60b8086da55b118761fbe1b90761f534d2#8756c63497c8dc39f7773438edf53b220c773f67"><strong style="font-weight: 600;">debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -8,7 +8,7 @@ export PYBUILD_DESTDIR=debian/snakemake</td>
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8
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<td class="new_line diff-line-num" data-linenumber="8" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"># copy the tests and run them from there to avoid having to clean up after them</span>
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<td class="old_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
9
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<td class="new_line diff-line-num" data-linenumber="9" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
9
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">export PYBUILD_BEFORE_TEST=chmod +x {dir}/bin/snakemake; cp -r {dir}/bin {dir}/tests {build_dir}</span>
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<td class="old_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
10
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<td class="new_line diff-line-num" data-linenumber="10" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
10
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">export PYBUILD_AFTER_TEST=rm -fr {build_dir}/bin {build_dir}/tests</span>
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<td class="old_line diff-line-num old" data-linenumber="11" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
11
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<td class="new_line diff-line-num old" data-linenumber="11" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: inherit;" align="right" bgcolor="#f9d7dc">
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<td class="line_content old" style="padding: inherit;" bgcolor="#fbe9eb"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>-<span class="line" data-lang="plaintext">export PYBUILD_TEST_ARGS=python{version} -m pytest -o faulthandler_timeout=60 -v {build_dir}/tests/test*.py -k 'not test_cwl <span class="idiff left deletion" style="background-color: #fac5cd;">and not</span> test_cwl_singularity <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_url_include <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_wrapper <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_issue1083 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_github_issue78 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_container <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_singularity <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_singularity_conda <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_convert_to_cwl <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_report <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_report_zip <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_archive <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_jupyter_notebook <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_conda <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_upstream_conda <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_conda_custom_prefix <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_script <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_issue635 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_issue1093 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_default_resources <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_default_remote <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_remote <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_output_file_cache_remote <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_tibanna <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_module_complex <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_module_complex2 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_module_with_script <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_module_report <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_modules_meta_wrapper <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_tes <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_deploy_script <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_deploy_hashing <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_peppy <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_modules_peppy <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_report_display_code <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_wrapper_local_git_prefix <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_github_issue1396 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_az_batch_executor <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_modules_prefix <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_ancient <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_github_issue1062 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_symlink_time_handling <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_env_modules <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_github_issue1460 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_rule_inheritance_globals <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_prebuilt_conda_script <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_persistent_dict <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_issue328 <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_pipes_fail <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_pipes <span class="idiff deletion" style="background-color: #fac5cd;">and not</span> test_multicomp_group_jobs <span class="idiff right deletion" style="background-color: #fac5cd;">and not</span> test_group_job_resources_with_pipe'</span>
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<td class="old_line diff-line-num new" data-linenumber="12" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="11" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
11
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext">export PYBUILD_TEST_ARGS=python{version} -m pytest -o faulthandler_timeout=60 -v {build_dir}/tests/test*.py -k 'not <span class="idiff left addition" style="background-color: #c7f0d2;">(</span>test_cwl <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_cwl_singularity <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_url_include <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_wrapper <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_issue1083 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_github_issue78 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_container <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_singularity <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_singularity_conda <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_convert_to_cwl <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_report <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_report_zip <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_archive <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_jupyter_notebook <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_conda <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_upstream_conda <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_conda_custom_prefix <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_script <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_issue635 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_issue1093 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_default_resources <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_default_remote <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_remote <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_output_file_cache_remote <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_tibanna <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_module_complex <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_module_complex2 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_module_with_script <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_module_report <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_modules_meta_wrapper <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_tes <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_deploy_script <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_deploy_hashing <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_peppy <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_modules_peppy <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_report_display_code <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_wrapper_local_git_prefix <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_github_issue1396 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_az_batch_executor <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_modules_prefix <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_ancient <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_github_issue1062 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_symlink_time_handling <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_env_modules <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_github_issue1460 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_rule_inheritance_globals <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_prebuilt_conda_script <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_persistent_dict <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_issue328 <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_pipes_fail <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_pipes <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_multicomp_group_jobs <span class="idiff addition" style="background-color: #c7f0d2;">or</span> test_group_job_resources_with_pipe<span class="idiff right addition" style="background-color: #c7f0d2;"> or test_converting_path_for_r_script)</span>'</span>
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<td class="old_line diff-line-num" data-linenumber="12" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
12
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12
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"></span>
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<td class="old_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
13
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<td class="new_line diff-line-num" data-linenumber="13" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
13
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"># Skipped because they download executables (which is forbidden in Debian buildd and debci)</span>
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<td class="old_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
14
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<td class="new_line diff-line-num" data-linenumber="14" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"># Snakefile/snakemake-wrapper/CWL scripts: test_cwl, test_cwl_singularity, test_url_include, test_wrapper, test_wrapper_local_git_prefix, test_module_with_script, test_module_report, test_module_complex(2), test_modules_meta_wrapper</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="38" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="38" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">...</td>
<td class="line_content match" style="color: rgba(5,5,6,.24); padding: inherit;" bgcolor="#fbfafd">@@ -38,6 +38,9 @@ export PYBUILD_TEST_ARGS=python{version} -m pytest -o faulthandler_timeout=60 -v</td>
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<td class="old_line diff-line-num" data-linenumber="38" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
38
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<td class="new_line diff-line-num" data-linenumber="38" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
38
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"># needs Azure credentials: test_az_batch_executor</span>
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<td class="old_line diff-line-num" data-linenumber="39" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
39
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<td class="new_line diff-line-num" data-linenumber="39" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
39
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"># flaky (these are run in autopkgtest but get 3 tries there) test_pipes_fail, test_pipes, test_multicomp_group_jobs, test_group_job_resources_with_pipe</span>
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<td class="old_line diff-line-num" data-linenumber="40" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
40
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<td class="new_line diff-line-num" data-linenumber="40" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
40
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"></span>
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<td class="old_line diff-line-num new" data-linenumber="41" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
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<td class="new_line diff-line-num new" data-linenumber="41" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
41
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"># skipped to avoid R instability from removing the snakemake package</span>
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<td class="new_line diff-line-num new" data-linenumber="42" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: inherit;" align="right" bgcolor="#ddfbe6">
42
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"># test_converting_path_for_r_script</span>
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<td class="line_content new" style="padding: inherit;" bgcolor="#ecfdf0"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'>+<span class="line" data-lang="plaintext"></span>
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41
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<td class="new_line diff-line-num" data-linenumber="44" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
44
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext">export PATH:=$(shell pybuild --print build_dir --interpreter python3 --name $(PYBUILD_NAME))/bin:$(PATH)</span>
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<td class="old_line diff-line-num" data-linenumber="42" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
42
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<td class="new_line diff-line-num" data-linenumber="45" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
45
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"></span>
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<td class="old_line diff-line-num" data-linenumber="43" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
43
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<td class="new_line diff-line-num" data-linenumber="46" style="width: 35px; color: rgba(5,5,6,.24); border-right-width: 1px; border-right-color: #ececef; border-right-style: solid; padding: inherit;" align="right" bgcolor="#fbfafd">
46
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<td class="line_content" style="padding: inherit;"><pre style='display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: inherit; border-radius: 2px; margin: 0; padding: 0; border: inherit solid #dcdcde;'> <span class="line" data-lang="plaintext"># Force the use of python3's sphinx-build.</span>
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