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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/b534d4bcd248bc4b9a5cd90c360cd11956e37bf5">b534d4bc</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2026-05-07T18:02:18+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 9.4.1</pre>
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42 changed files:
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.gitlab-ci.yml
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<a href="#a88e2a926426071529e2985b4ee35848bb987e65">
BOTS.md
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<a href="#1a86abc3ec747473c3837236573ac86517bdc99e">
contrib/admin/cleanup_aws_resources.py
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contrib/admin/find_hanging_tests.py
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contrib/admin/test-pr
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docker/Dockerfile.py
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pyproject.toml
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requirements-cwl.txt
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requirements-dev.txt
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requirements.txt
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src/toil/batchSystems/mesos/batchSystem.py
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src/toil/batchSystems/slurm.py
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src/toil/cwl/cwltoil.py
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src/toil/cwl/utils.py
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src/toil/job.py
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src/toil/jobStores/aws/jobStore.py
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src/toil/lib/aws/ami.py
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src/toil/lib/aws/s3.py
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src/toil/lib/aws/utils.py
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src/toil/lib/aws/utils.py.orig
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src/toil/lib/generatedEC2Lists.py
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src/toil/options/common.py
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src/toil/provisioners/aws/awsProvisioner.py
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src/toil/server/cli/wes_cwl_runner.py
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src/toil/server/utils.py
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src/toil/server/wes/tasks.py
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src/toil/server/wes/toil_backend.py
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src/toil/test/batchSystems/batchSystemTest.py
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src/toil/test/batchSystems/test_slurm.py
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src/toil/test/cactus/test_cactus_integration.py
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src/toil/test/cwl/cwlTest.py
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src/toil/test/jobStores/jobStoreTest.py
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src/toil/test/lib/aws/test_s3.py
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src/toil/test/server/serverTest.py
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src/toil/test/sort/sortTest.py
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src/toil/test/src/jobFileStoreTest.py
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src/toil/test/src/jobServiceTest.py
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src/toil/test/src/jobTest.py
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src/toil/test/utils/utilsTest.py
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src/toil/test/wdl/testfiles/cromwell_pair.wdl
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src/toil/test/wdl/wdltoil_test.py
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<a href="#5924b9c92b6ea461ef4ffca6c6e00a0d1d183452">
version_template.py
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