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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch upstream at <a href="https://salsa.debian.org/med-team/busco">Debian Med / busco</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/busco/-/commit/d039b4582e2bfaed303bbb507463c857ea0e9e2f">d039b458</a></strong>
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<span> by Andreas Tille </span> <i> at 2026-06-01T16:29:39+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 6.0.0</pre>
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43 changed files:
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<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
CHANGELOG
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<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
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<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#2e553dba9eac3b861936b9c662ee7d87c706dea0">
bin/busco
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<a href="#80680bd277bcadaacce5cbc6697d87d491a734b6">
config/config.ini
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scripts/generate_plot.py
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<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<a href="#2ada855635f5c6d16c195f4d86d45f3b73878c0f">
src/busco/Actions.py
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src/busco/AutoLineage.py
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src/busco/BuscoConfig.py
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src/busco/BuscoDownloadManager.py
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src/busco/BuscoLogger.py
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src/busco/BuscoPlacer.py
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src/busco/BuscoPlot.py
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src/busco/BuscoRunner.py
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src/busco/ConfigManager.py
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src/busco/Exceptions.py
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src/busco/__init__.py
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src/busco/_version.py
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src/busco/analysis/Analysis.py
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src/busco/analysis/BuscoAnalysis.py
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<a href="#38e7c7424f4128a85c46ceb416b47ef2236e42b9">
src/busco/analysis/GeneSetAnalysis.py
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src/busco/analysis/GenomeAnalysis.py
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<a href="#ebcdfbf3c61b5f1c742810606673eae398f762bc">
src/busco/analysis/TranscriptomeAnalysis.py
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src/busco/busco_tools/Toolset.py
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src/busco/busco_tools/augustus.py
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src/busco/busco_tools/base.py
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src/busco/busco_tools/bbtools.py
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src/busco/busco_tools/blast.py
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src/busco/busco_tools/hmmer.py
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<a href="#53f20ac1df6a610b6a21de977367ddb3704f3394">
src/busco/busco_tools/metaeuk.py
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src/busco/busco_tools/miniprot.py
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<a href="#a8bb1ce5dbb762d6d747877e3cd1a112432603a4">
src/busco/busco_tools/prodigal.py
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<a href="#7e3d64a99911d797831b8bd445522c48f255b57d">
src/busco/busco_tools/sepp.py
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<a href="#bd0e703ba072ee7447fcc5bd1e634475b3438cf9">
src/busco/run_BUSCO.py
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<a href="#dba59ea4008347497ea58386e70f0fd75cc9a2e4">
test_data/bacteria/expected_log.txt
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<a href="#11a346fb4c4f7cb01e1e5466e6712687c54fe746">
test_data/eukaryota/expected_log.txt
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tests/unittest_runner.py
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<a href="#ecaba573b4d50cb889221b97937db25cede5aabb">
tests/unittests/AutoLineage_unittests.py
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<a href="#4d3a9839ba0a4f2cc537e69c146c7eb84ae0a7a7">
tests/unittests/BuscoConfig_unittests.py
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tests/unittests/ConfigManager_unittests.py
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<a href="#480430e97df92c2ae922e852fe89a5f357c98cda">
tests/unittests/GenomeAnalysis_unittests.py
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<a href="#aa012e22a56237f02b563d02f1158f5cb5ac25fe">
tests/unittests/run_BUSCO_unittests.py
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