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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Karsten Schöke pushed to branch upstream at <a href="https://salsa.debian.org/med-team/python-treetime">Debian Med / python-treetime</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-treetime/-/commit/f102ecd5cbd3d8b7c63f26b0f7efdd6d6b020a51">f102ecd5</a></strong>
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<span> by Karsten Schöke </span> <i> at 2026-06-03T08:47:28+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.12.1</pre>
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<h4 style="margin-top: 10px; margin-bottom: 10px;">
46 changed files:
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<li class="file-stats">
<a href="#58278ca6e186f004b12621f8c3155064b4dc09b6">
.pylintrc
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<a href="#333e56fb4b5e3fd520e4f358b48e25e35345ccc1">
benchmarking/sequence_algorithms.py
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<a href="#c25ec79770a0b9041c46fb171e07173e47a6abd5">
benchmarking/timetree_algorithms.py
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<li class="file-stats">
<a href="#4c23f3e77a0ef00cf8da63e8e50eef5197724f75">
changelog.md
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<a href="#b83344588e1543246151ef5b4267cb677c79d727">
contributing.md
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<a href="#aded7756cdea7c289134466a0d54da4f26d43abb">
docs/source/conf.py
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<a href="#62df078594b947ca6f787a59ae6ddefabce9fcad">
docs/source/index.rst
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pylint_source_reporter.py
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pyproject.toml
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pyrightconfig.json
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release
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scripts/extract-release-notes
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<li class="file-stats">
<a href="#eb7e02d594a350ead80abae943374f341534df55">
test/coalescent_tests.py
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<a href="#cd4aeefa8067e57256a534fa9c8bb13bc5e91fe1">
test/fft_accuracy.ipynb
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<a href="#9d3a9ca96fa5a8595b082d95a338bf367e807af0">
test/fft_tests.py
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<a href="#efc1f10a9378e98a2d4872a4d9165a24bdf98088">
test/fft_timer.py
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<a href="#8bb394b4b5294575d3e80585a50a9fb802b973b9">
test/test_calc_nbranches.py
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<li class="file-stats">
<a href="#7a513663688f4096eb663d34c667233688ef8265">
test/test_treetime.py
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<li class="file-stats">
<a href="#3fbbf22b1b6cb7b53b1579b816069457bd8a7eaf">
test/test_vcf.py
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<li class="file-stats">
<a href="#69dc641dc8a4f2ceee2025d190e2e761dcae3c84">
treetime/CLI_io.py
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<a href="#716e6f6c16580800d13452615e2c01668aacc288">
treetime/__init__.py
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<a href="#f3968ef54a1ec991f68a8e3b407e656684ddc39e">
treetime/__main__.py
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<a href="#797e2405beac82b907fe24f83980a349d358fd60">
treetime/aa_models.py
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<a href="#1386ec3530b33776c5c9eba0c4137baf707fe36c">
treetime/arg.py
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<a href="#595202a65707f2c13afa5a4958366d4eb8a9353e">
treetime/argument_parser.py
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<a href="#2f31b64169ef6c88c692cc0cdfff463cce2912e0">
treetime/branch_len_interpolator.py
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<a href="#15c2d91bed02b64945cc0f1947f5a93a4c2c7c2c">
treetime/clock_filter_methods.py
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<a href="#d83958daf140c08b7ec128fe971dc4438e4ebc30">
treetime/clock_tree.py
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<a href="#26f98bca9d95bf5f13d1e05c03d8aa6a8ce146ee">
treetime/config.py
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<a href="#9197866d72ee7afc1de2097e1da379c23f68c559">
treetime/distribution.py
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<a href="#b990c4f689cacd4a1e8800b187c4078a5c5ed01f">
treetime/gtr.py
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<a href="#2079a85c231a4f534ebaf29fa31ed62071d9eb24">
treetime/gtr_site_specific.py
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<a href="#ea6325c04095908d06ab422a724a6b1ff8dbdd51">
treetime/merger_models.py
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<a href="#3aeeb413c53c6b3ee346e05c6bb707f4cfe6aeb3">
treetime/node_interpolator.py
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<li class="file-stats">
<a href="#f1104d34c9e0a9e070b95cee96972340163867e3">
treetime/nuc_models.py
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<li class="file-stats">
<a href="#82a08428349f48dbbab4c8ccac6320f52b4c7a7b">
treetime/seq_utils.py
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</li>
<li class="file-stats">
<a href="#0571519df7f8cf585d85cbbbf8be96d68c6d676c">
treetime/seqgen.py
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<li class="file-stats">
<a href="#5233e2843fb208ffac5520b8b6d010090372931b">
treetime/sequence_data.py
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<li class="file-stats">
<a href="#a2e471fd9fc09543e8fd92727442680e1b76576b">
treetime/treeanc.py
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<li class="file-stats">
<a href="#20e5b42fc56612eb476c510ffba58152379c4609">
treetime/treeregression.py
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<li class="file-stats">
<a href="#0994bbb65b28bed19201420b96136d5e9f676859">
treetime/treetime.py
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<li class="file-stats">
<a href="#b73718dcdf4bacd94dd536b6bb62ded9789d6bc5">
treetime/utils.py
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<li class="file-stats">
<a href="#86f02b8df99e58795d36ed9e703173e372da3411">
treetime/vcf_utils.py
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<li class="file-stats">
<a href="#884b9238819e29c9c3a7ccd69fd2f6ed9f2fab18">
treetime/wrappers.py
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The diff was not included because it is too large.
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