<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: hsla(0,0%,100%,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: hsla(0,0%,100%,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch master at <a href="https://salsa.debian.org/med-team/iva">Debian Med / iva</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/43aeacb8e772dd7b46c24db5ce8f6ba10c1d0f45">43aeacb8</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:52:59+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/watch: version=5
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/f477eab3c0f9216df53bd327a2441972d7ed6dd6">f477eab3</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:53:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 1.5.0+ds</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/6cf245bd158cc401f25231c816241d5e2f0aabfe">6cf245bd</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:53:13+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/1e205cd4b11dfc6e8cb71a3b5bfc78589d1bca91">1e205cd4</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:53:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/1.5.0+ds'
Update to upstream version '1.5.0+ds'
with Debian dir c52e786a6178a5ac89008a978a94a6e1db18ea15</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/777f9ad5917bac9344777159a80d0c9c91831803">777f9ad5</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:53:14+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.4 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/66d60e4f59c6bca6ca5bae4c93ead1ae65e8bbf7">66d60e4f</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:53:42+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Changes made by cme
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/8053866beeda6dc936b197fd9e29cc1287f88d71">8053866b</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T21:53:46+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Drop 'Rules-Requires-Root: no' from d/control (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/da66b1bcb0ad696bb6d3b1f8676dec8f7d9ee0fe">da66b1bc</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T20:53:55+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Set upstream metadata fields: Repository.
Changes-By: lintian-brush
Fixes: lintian: source: upstream-metadata-missing-repository [debian/upstream/metadata]
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/3684befc8972a0e81748818ba38d87e3ebfe1335">3684befc</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T22:07:25+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Rebase patches
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/iva/-/commit/e32405e63d8a7db77c19a1419bacdb8e8f266fc3">e32405e6</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-07-07T22:15:22+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>TODO: package https://github.com/sanger-pathogens/Fastaq
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
89 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
<span class="deleted-file">
−
.travis.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#dad57a4c245a8007c90257aef0514c8b6a0f600c">
AUTHORS
</a>
</li>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
<span class="deleted-file">
−
CHANGELOG.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
<span class="deleted-file">
−
Dockerfile
</span>
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#eb87ec652627eee639f2c07e848585273c66986d">
debian/patches/disable-multithreaded-test.patch
</a>
</li>
<li class="file-stats">
<a href="#52f14c7acaf339b4de8300190a503a96f5611ddc">
debian/patches/disable-ram-test.patch
</a>
</li>
<li class="file-stats">
<a href="#e099a4eca2f119aee99c7c7fce33d9040ea1a622">
debian/patches/perl-shebang.patch
</a>
</li>
<li class="file-stats">
<a href="#bf302d6bd56111c8de511d72cef021c9bf546d85">
<span class="deleted-file">
−
debian/patches/python3.12.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#0e7dcd3ba66c586c8c88678c775f0e9b2ee4f8ae">
debian/patches/samtools1.10
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#979aaba6bf3b8d8ad6f1a282ba3e3aed57e531c9">
debian/patches/syntax-warning.patch
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#58db356d9e8caa509e2c0b01ad695756114c19e9">
<span class="deleted-file">
−
install_dependencies.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#2465b448470d26fb0af89e27690bb2c74fffe81d">
iva/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#0101d444138700c53ee0f4b907ac70afae38728c">
iva/assembly.py
</a>
</li>
<li class="file-stats">
<a href="#874029fce56c4b60d3c15214e7c0a5b9379fad90">
iva/common.py
</a>
</li>
<li class="file-stats">
<a href="#ccfefffc24b9a5b3a0125a04da2f8d73e9f4cf0a">
iva/contig.py
</a>
</li>
<li class="file-stats">
<a href="#46722877a35e27e9075991ff84d3e0d0a29303a1">
iva/contig_trim.py
</a>
</li>
<li class="file-stats">
<a href="#16e23b56a3b1471a2e04501246b6e83105730e70">
iva/edge.py
</a>
</li>
<li class="file-stats">
<a href="#c4bb11e24f66b81672c965abf9dff91868d435cc">
<span class="deleted-file">
−
iva/egg_extract.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#471ed1a05683303bbc0ed86b5e9d8b96013fc076">
iva/external_progs.py
</a>
</li>
<li class="file-stats">
<a href="#b42976db4a191be129f251b93d87b245830470d6">
iva/gage/getCorrectnessStats.sh
</a>
</li>
<li class="file-stats">
<a href="#94095ea5890891b2412f16daa4cf6c7e36011344">
iva/gage/getMummerStats.sh
</a>
</li>
<li class="file-stats">
<a href="#8a25bdec177fcf19931914ccb79013942db99ed7">
iva/graph.py
</a>
</li>
<li class="file-stats">
<a href="#d1bb122c6b29a9cc453f6238bde7331db35eed80">
iva/kcount.py
</a>
</li>
<li class="file-stats">
<a href="#ab3536827360e20164d615722d7d766ac9d27351">
iva/kmers.py
</a>
</li>
<li class="file-stats">
<a href="#3d1a7445e37fa0fa4282866cb7334bf22938b934">
iva/kraken.py
</a>
</li>
<li class="file-stats">
<a href="#33d8d659f5aff3e15171f61435ba4928c184b3a0">
iva/mapping.py
</a>
</li>
<li class="file-stats">
<a href="#465156a95234bd23fa52e2479a0c9cd12a1a16f3">
iva/mummer.py
</a>
</li>
<li class="file-stats">
<a href="#0d7fcffeee4768e8f1ff50892f21bb05654f4c34">
iva/qc.py
</a>
</li>
<li class="file-stats">
<a href="#14ba4269a1f14be59e76e2653dea6ed682f1c460">
iva/qc_external.py
</a>
</li>
<li class="file-stats">
<a href="#982d1917356fd1c9199c2bfde6d34f0880ec947e">
iva/ratt/embl2gff.pl
</a>
</li>
<li class="file-stats">
<a href="#4c676c472d122fbc023b806cc608d8078e07ff4e">
iva/ratt/genbank2embl.pl
</a>
</li>
<li class="file-stats">
<a href="#efb0931db4ad801b01dc1e6b562799b975c78683">
iva/ratt/main.ratt.pl
</a>
</li>
<li class="file-stats">
<a href="#22fe76d723e8e863a906f14241ddee4866900198">
iva/ratt/ratt_correction.pm
</a>
</li>
<li class="file-stats">
<a href="#2f22e6acfaaa6d0ead8cb2a476c248ad46e06542">
iva/ratt/start.ratt.sh
</a>
</li>
<li class="file-stats">
<a href="#bc805133fc3d9eea539059eb42dbdeaefd24d023">
iva/read_trim.py
</a>
</li>
<li class="file-stats">
<a href="#ce5863bb1c08907d3eae88c10f5da69290445351">
iva/seed.py
</a>
</li>
<li class="file-stats">
<a href="#9e32c4c82951324f0f09018a54e7dee696f55c0e">
iva/seed_processor.py
</a>
</li>
<li class="file-stats">
<a href="#e72c8775d295f2ef64477a2849c6c0e25830bddf">
<span class="deleted-file">
−
iva/test_data_runner.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#89c054ebf7bc88cc5a65ee17c49ae32e4611cf40">
<span class="deleted-file">
−
iva/test_run_data/hiv_pcr_primers.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#d516b0fb0ece4416313dba65f297ec9a0372758f">
<span class="deleted-file">
−
iva/test_run_data/iva_contigs_no_trimmomatic.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#2936d5859887683dc4a1ab693ce660bfab72959b">
<span class="deleted-file">
−
iva/test_run_data/iva_contigs_with_trimmomatic.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#05436a737b32160a1bb172709cd079be3798f955">
<span class="deleted-file">
−
iva/test_run_data/reads_1.fq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a1ad96f16217176b7ef748a8ab2c6e396343e70">
<span class="deleted-file">
−
iva/test_run_data/reads_2.fq.gz
</span>
</a>
</li>
<li class="file-stats">
<a href="#d072e629e01a1d429f944daeba3fe37c6a46aca4">
<span class="deleted-file">
−
iva/test_run_data/reference.fasta
</span>
</a>
</li>
<li class="file-stats">
<a href="#8822ce577d53ce910a3e09aeef03cc733a8c0380">
iva/tests/assembly_test.py
</a>
</li>
<li class="file-stats">
<a href="#44032a66dc62d52f98b235079a735b778c3116c8">
iva/tests/contig_test.py
</a>
</li>
<li class="file-stats">
<a href="#c53ac389af610f12c881c912bc7ff928f46a6b2c">
iva/tests/contig_trim_test.py
</a>
</li>
<li class="file-stats">
<a href="#6f8a735cc0af28fdda8a3b1e8badcfee2fe6c435">
iva/tests/data/contig_trim_test_contigs.fa
</a>
</li>
<li class="file-stats">
<a href="#c003c8dfdd9356130cad1de00e31ae5af963eafd">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir.zip
</span>
</a>
</li>
<li class="file-stats">
<a href="#ebca1bd045a1e7068102cabced291abbfd02a61b">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir/.zip
</span>
</a>
</li>
<li class="file-stats">
<a href="#04ec077c82f0a20cd340dffb4e948c64328d9e75">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir/file1
</span>
</a>
</li>
<li class="file-stats">
<a href="#6a0e3732087836fbad7382cd3c9b30b7319fa6c5">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir/iva/gage/gage1
</span>
</a>
</li>
<li class="file-stats">
<a href="#49c706f95637117dfeb6aefe5541fa7b7f4eb9a9">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir/iva/gage/gage2
</span>
</a>
</li>
<li class="file-stats">
<a href="#f08bef8c583d3978b8e9b019391d490080219420">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir/iva/ratt/ratt1
</span>
</a>
</li>
<li class="file-stats">
<a href="#d3100834d52f01ac7e67605d5c559d4c967c6cf6">
<span class="deleted-file">
−
iva/tests/data/egg_extract_test_dir/iva/ratt/ratt2
</span>
</a>
</li>
<li class="file-stats">
<a href="#604f20f1cfeaf6c2e8763ed9a7c2aedc0d614943">
<span class="deleted-file">
−
iva/tests/data/kraken_count_cds_from_embl.0
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c1c25ca5def9681a3da2727a7629dc84dce1cd2">
<span class="deleted-file">
−
iva/tests/data/kraken_count_cds_from_embl.1
</span>
</a>
</li>
<li class="file-stats">
<a href="#299ae1bfd0b303ade0cf034d7aba5ea31ad837fa">
<span class="deleted-file">
−
iva/tests/data/kraken_count_cds_from_embl.2
</span>
</a>
</li>
<li class="file-stats">
<a href="#d7231059b6cf96662be253a94e9d2c2908530259">
<span class="deleted-file">
−
iva/tests/data/qc_external_test_run_gage.out
</span>
</a>
</li>
<li class="file-stats">
<a href="#207efc43fe1a5d5af601c9aae87e8b74b51076c9">
<span class="deleted-file">
−
iva/tests/data/qc_external_test_run_gage.ref.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#08952660942dc3f35ae9fd405151a1b90e6491a9">
<span class="deleted-file">
−
iva/tests/data/qc_external_test_run_gage.scaffs.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#def023a27e3e14b754636ff3c586e4bcb427aba9">
<span class="deleted-file">
−
iva/tests/data/qc_external_test_run_ratt.assembly.fa
</span>
</a>
</li>
<li class="file-stats">
<a href="#b730694d926fc6eda23b35d23aa836e8aff71f70">
<span class="deleted-file">
−
iva/tests/data/qc_external_test_run_ratt.embl/hiv-1.embl
</span>
</a>
</li>
<li class="file-stats">
<a href="#c6feade13baa7970a2a3f7708bac6702ed95c3a0">
iva/tests/edge_test.py
</a>
</li>
<li class="file-stats">
<a href="#4ebe9dc7c8da88b77d500bcb85395d87e9271135">
<span class="deleted-file">
−
iva/tests/egg_extract_test.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#753450ba6686e36b21b76f21d74b8941733c8d0f">
iva/tests/external_progs_test.py
</a>
</li>
<li class="file-stats">
<a href="#069f4eb2ed9ed476351993e78203c3ddbafbdc0c">
iva/tests/graph_test.py
</a>
</li>
<li class="file-stats">
<a href="#5923d1b4390779afa3f9849e0e2e916c5f91892f">
iva/tests/kcount_test.py
</a>
</li>
<li class="file-stats">
<a href="#d559fecca229c377de013661c90e00bd5f1b7fe0">
iva/tests/kmers_test.py
</a>
</li>
<li class="file-stats">
<a href="#333f748c7c94ba6ae2bf8ffe018d8b31db71e2af">
iva/tests/kraken_test.py
</a>
</li>
<li class="file-stats">
<a href="#6aa274e7ddde463e1dee734edcbbac07037cb443">
iva/tests/mapping_test.py
</a>
</li>
<li class="file-stats">
<a href="#81af9d86d07afb2b0196db34fef6f9992f4b9509">
iva/tests/mummer_test.py
</a>
</li>
<li class="file-stats">
<a href="#ee1ab497d53df4809b8730d4c88b32c872402fa5">
<span class="deleted-file">
−
iva/tests/qc_external_test.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3c209383dcec902d7d87bf82a5d583033b784c0e">
iva/tests/qc_test.py
</a>
</li>
<li class="file-stats">
<a href="#f9cd0746c0305fb364bd19dc7aedd6c7fda25a35">
iva/tests/read_trim_test.py
</a>
</li>
<li class="file-stats">
<a href="#ab6a2d40924d64cae8a47f78a293a28e977495f0">
iva/tests/seed_processor_test.py
</a>
</li>
<li class="file-stats">
<a href="#345ae4d5e2a1d0ec684b70724d798f664e9a4235">
iva/tests/seed_test.py
</a>
</li>
<li class="file-stats">
<a href="#bc432b49a7ae66f45afd7cc623395ba88bb53450">
scripts/iva
</a>
</li>
<li class="file-stats">
<a href="#6f45a3d510235355c4dfdb3b64c8d9bf595d3a57">
scripts/iva_qc
</a>
</li>
<li class="file-stats">
<a href="#c9ef046fe501399d3b7c0f87eec8b6a9b89079be">
scripts/iva_qc_make_db
</a>
</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">
—
<br>
<a href="https://salsa.debian.org/med-team/iva/-/compare/c96db0936235f59c01ae8ce816941038d4ec1f29...e32405e63d8a7db77c19a1419bacdb8e8f266fc3">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<span style="color: transparent; font-size: 0; display: none; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0;">
Notification message regarding https://salsa.debian.org/med-team/iva/-/compare/c96db0936235f59c01ae8ce816941038d4ec1f29...e32405e63d8a7db77c19a1419bacdb8e8f266fc3 at 1783455362
</span>
</p>
</div>
</body>
</html>