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<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch upstream at <a href="https://salsa.debian.org/med-team/toil">Debian Med / toil</a>
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Commits:
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<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/toil/-/commit/a86ebb488f8f252beab24ecaf5467ae6eeafe225">a86ebb48</a></strong>
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<span> by Michael R. Crusoe </span> <i> at 2026-08-24T14:42:08+02:00 </i>
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<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 9.5.0</pre>
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42 changed files:
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<a href="#587d266bb27a4dc3022bbed44dfa19849df3044c">
.gitlab-ci.yml
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<a href="#a88e2a926426071529e2985b4ee35848bb987e65">
BOTS.md
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docker/Dockerfile.py
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docs/appendices/environment_vars.rst
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docs/running/cliOptions.rst
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requirements-dev.txt
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src/toil/batchSystems/kubernetes.py
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src/toil/batchSystems/slurm.py
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src/toil/common.py
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src/toil/cwl/cwltoil.py
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src/toil/fileStores/abstractFileStore.py
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src/toil/fileStores/cachingFileStore.py
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src/toil/fileStores/nonCachingFileStore.py
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src/toil/job.py
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src/toil/jobStores/abstractJobStore.py
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src/toil/jobStores/aws/jobStore.py
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src/toil/jobStores/fileJobStore.py
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src/toil/jobStores/googleJobStore.py
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src/toil/jobStores/utils.py
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src/toil/leader.py
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src/toil/lib/aws/s3.py
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src/toil/lib/threading.py
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src/toil/provisioners/clusterScaler.py
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src/toil/statsAndLogging.py
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src/toil/test/jobStores/jobStoreTest.py
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src/toil/test/options/options.py
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src/toil/test/server/serverTest.py
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src/toil/test/src/fileStoreTest.py
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src/toil/test/src/jobTest.py
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src/toil/test/src/threadingTest.py
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src/toil/test/utils/toilDebugTest.py
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src/toil/test/utils/utilsTest.py
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src/toil/utils/toilLaunchCluster.py
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src/toil/wdl/wdltoil.py
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src/toil/worker.py
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version_template.py
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