<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>
<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>
<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: hsla(0,0%,100%,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: hsla(0,0%,100%,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">
<h3 style="margin-top: 20px; margin-bottom: 10px;">
Michael R. Crusoe pushed to branch master at <a href="https://salsa.debian.org/med-team/python-bx">Debian Med / python-bx</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/2873d8117209b9e6a6326b668fb5c47ca4fda1ed">2873d811</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:21:32+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/4f665dd0e8a06452f15a348cbe3c9e45faa1f9f9">4f665dd0</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:21:33+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 0.15.0</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/42da335dae56436d56567239daa7ce2b2ccd3c7e">42da335d</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:21:34+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/0.15.0'
Update to upstream version '0.15.0'
with Debian dir 2b4508d5458380290f38c2b3bff6c470274a3abd</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/1924ea8e84067154e7c78adc02779681fbf77c13">1924ea8e</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:21:35+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.4 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/2ac9b2926bf2d1bbe01f0ce7abe9d7932e3d4863">2ac9b292</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:21:45+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Changes made by cme
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/27862c2697e9e4318c9403618ff193a5eff095f2">27862c26</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T16:21:47+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update watch file format version to 5.
Changes-By: lintian-brush
Fixes: lintian: older-debian-watch-file-standard
See-also: https://lintian.debian.org/tags/older-debian-watch-file-standard.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/252388663acbc8cadb915f7ad6ad7414b4d022d7">25238866</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T16:21:48+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Use GitHub template in watch file instead of explicit Source/Matching-Pattern.
Changes-By: lintian-brush
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/072da2ea982c18dc3339683b66ae1349bc1ead85">072da2ea</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T16:21:56+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Set upstream metadata fields: Bug-Database, Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
Fixes: lintian: upstream-metadata-missing-bug-tracking
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-bug-tracking.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/154463637fc560b3ecf3da4a501db7afb2cdce28">15446363</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:21:57+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debputy lint --auto-fix (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/0d75e25a4c85b5085313207c29b4cdee1299d129">0d75e25a</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:24:52+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Refreshed patches.
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/2464cd2b9edcb66c06e1240d5468e960a93d7307">2464cd2b</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T16:25:28+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Set upstream metadata fields: Repository, Repository-Browse.
Changes-By: lintian-brush
Fixes: lintian: upstream-metadata-missing-repository
See-also: https://lintian.debian.org/tags/upstream-metadata-missing-repository.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/python-bx/-/commit/c60efaca3edd5faca41a5b8cc7e5505a060abe1c">c60efaca</a></strong>
<div>
<span> by Michael R. Crusoe </span> <i> at 2026-08-27T17:28:08+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>routine-update: Ready to upload to unstable
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
114 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#3ac517dad11a750eb4733a0cf5eb375d247f3116">
<span class="new-file">
+
.flake8
</span>
</a>
</li>
<li class="file-stats">
<a href="#091aff741808a09242f252264b14f4a9adaa5305">
<span class="new-file">
+
.github/dependabot.yml
</span>
</a>
</li>
<li class="file-stats">
<a href="#6bf1df73dcb0e35c845e374bc98e9b64aa8192ae">
.github/workflows/deploy.yaml
</a>
</li>
<li class="file-stats">
<a href="#a60e2382fd0c34cb06177a3d7034264e22531192">
.github/workflows/test.yaml
</a>
</li>
<li class="file-stats">
<a href="#25934851f51d4a1b7a67062c836742e44a28d1a5">
<span class="new-file">
+
.github/workflows/zizmor.yaml
</span>
</a>
</li>
<li class="file-stats">
<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
LICENSE
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#50d4a32d9f88409b9c1c42a8bdf7478212416bf0">
debian/patches/fix_BIN_OFFSETS_MAX
</a>
</li>
<li class="file-stats">
<a href="#21f07864a3929c097dd38d0ed1d1b912b1f34a64">
debian/patches/shebang.patch
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#9d4e8ab62832d7b298261aae1fe1123d28783525">
doc/source/conf.py
</a>
</li>
<li class="file-stats">
<a href="#87c1820b3e9b05cd007ea95036b5904546475c20">
lib/bx/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#b0fd4232203e980bc42f7809e5089534800daf2b">
lib/bx/align/axt.py
</a>
</li>
<li class="file-stats">
<a href="#022799f5b9883cfba8e844c77872ec36d421722c">
lib/bx/align/core.py
</a>
</li>
<li class="file-stats">
<a href="#1e88a4ba6ab746c5b9e27513aa5422efe1d7b9b3">
lib/bx/align/epo.py
</a>
</li>
<li class="file-stats">
<a href="#e2c14a2dc525a10b97477c8d7f4077fe1a09c966">
lib/bx/align/epo_tests.py
</a>
</li>
<li class="file-stats">
<a href="#39a1202bddbd23d4dd561e423801ab8b82621f9f">
lib/bx/align/lav.py
</a>
</li>
<li class="file-stats">
<a href="#824beac453875e2a5b618e47f08a203938053e10">
lib/bx/align/lav_tests.py
</a>
</li>
<li class="file-stats">
<a href="#ffdbc18d76513da053a32f8649d02490438546ef">
lib/bx/align/maf.py
</a>
</li>
<li class="file-stats">
<a href="#40f2703106ddb404171381e20700da394c5760cb">
lib/bx/align/maf_tests.py
</a>
</li>
<li class="file-stats">
<a href="#85cc4b975867c8d5e052dbf4aa478a052b57aa0d">
lib/bx/align/score.py
</a>
</li>
<li class="file-stats">
<a href="#b18d6b3f433a85ba9a5736774b2921f2efcd467b">
lib/bx/align/sitemask/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#eb39771b6b419d0d17ef7530a6ef7f7ae11902f6">
lib/bx/align/tools/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#aa7376865c5975ab17bed02d34fd51a5e7e968c9">
lib/bx/arrays/array_tree_tests.py
</a>
</li>
<li class="file-stats">
<a href="#1f3d03bf5a3779d95c2d1b6918e2b6953c654dd1">
lib/bx/bbi/bbi_file.pyx
</a>
</li>
<li class="file-stats">
<a href="#782b756254e63926218f26fc9a468f0c55f2c149">
lib/bx/binned_array.py
</a>
</li>
<li class="file-stats">
<a href="#96ba084a860fd628d6e3775c4b144bebb4e620e9">
lib/bx/binned_array_tests.py
</a>
</li>
<li class="file-stats">
<a href="#73cd40c40735dd537ef0aa163fb222e80db1089f">
lib/bx/bitset_utils.py
</a>
</li>
<li class="file-stats">
<a href="#e4542d5030beef0c93e9b3ac012134698de7b14f">
lib/bx/cookbook/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#e718ec019cc9540b5a8718255ec5553c5c650d76">
lib/bx/cookbook/doc_optparse.py
</a>
</li>
<li class="file-stats">
<a href="#a4e148e603ea2670c3c568a75365d8575872e7c4">
lib/bx/interval_index_file.py
</a>
</li>
<li class="file-stats">
<a href="#d18b60a83ac5c6c79e632e9e89e68cce34abeea0">
lib/bx/interval_index_file_tests.py
</a>
</li>
<li class="file-stats">
<a href="#243cb4e08da80e92e253a4d0c60bb836981899ec">
lib/bx/intervals/io.py
</a>
</li>
<li class="file-stats">
<a href="#c9be6f3e8f4f075c90e75b143d33ec5be3787d4c">
lib/bx/intervals/operations/concat.py
</a>
</li>
<li class="file-stats">
<a href="#4d3e138d9ea89e19585349388cd864b82c923a66">
lib/bx/intervals/operations/join.py
</a>
</li>
<li class="file-stats">
<a href="#29cdd67e006ffe226cbd820486dcf212f376602c">
lib/bx/intervals/operations/quicksect.py
</a>
</li>
<li class="file-stats">
<a href="#a5019e950284f365da1989f40c6155b50ba7353b">
lib/bx/intervals/random_intervals.py
</a>
</li>
<li class="file-stats">
<a href="#a12fbfa547ad26203154e6acb857292631de1819">
lib/bx/misc/seekbzip2_tests.py
</a>
</li>
<li class="file-stats">
<a href="#20658b9230b0d92c28153cc33c8b95c8eeb0ebb1">
lib/bx/motif/io/transfac.py
</a>
</li>
<li class="file-stats">
<a href="#33b2a8d62c41a53ad877789da8c0d1a0fe94e174">
lib/bx/motif/pwm.py
</a>
</li>
<li class="file-stats">
<a href="#33ecd5aaab3b06a0c17e58505d8b93c8ddc83851">
lib/bx/phylo/newick.py
</a>
</li>
<li class="file-stats">
<a href="#7801e03466671c8ea70edce684dae9c712316eb5">
lib/bx/pwm/bed_score_aligned_pwm.py
</a>
</li>
<li class="file-stats">
<a href="#2357cb60c32bbec2cce3567db5c179402edf7e6d">
lib/bx/pwm/bed_score_aligned_string.py
</a>
</li>
<li class="file-stats">
<a href="#be4abf90056bce174a0252e18b28879b9f0afd3b">
lib/bx/pwm/maf_select_motifs.py
</a>
</li>
<li class="file-stats">
<a href="#67c79078969f5a84880531e90dbff73fa7e38dcb">
lib/bx/pwm/position_weight_matrix.py
</a>
</li>
<li class="file-stats">
<a href="#ccee1801ee81cd6712bfe63ac7b1eb02d70de720">
lib/bx/pwm/pwm_score_maf.py
</a>
</li>
<li class="file-stats">
<a href="#57baff870e514980ae736d2e3c511ed642daf90a">
lib/bx/pwm/pwm_score_motifs.py
</a>
</li>
<li class="file-stats">
<a href="#b30b71e9f1d5cb264421d2ea78a7538024755e4b">
lib/bx/pwm/pwm_score_positions.py
</a>
</li>
<li class="file-stats">
<a href="#87afe24f14efabb815b574dcc8617d3903341a4f">
lib/bx/seq/fasta.py
</a>
</li>
<li class="file-stats">
<a href="#b44f6db7532087a1b3cdad0e87638e5a84555938">
lib/bx/seq/nib.py
</a>
</li>
<li class="file-stats">
<a href="#06a95a59d84ee41e5998252826defb28634ab7a5">
lib/bx/seq/qdna.py
</a>
</li>
<li class="file-stats">
<a href="#f7c08edf82883992d2a4651ce744e39ad17d5af6">
lib/bx/seq/seq.py
</a>
</li>
<li class="file-stats">
<a href="#1f519ab7139a51eb0b3dede3b55c62ab16ee6530">
lib/bx/seq/seq_tests.py
</a>
</li>
<li class="file-stats">
<a href="#afc52934ef927f0b735fed3d6f32f32ede6ea92a">
lib/bx/seq/twobit.py
</a>
</li>
<li class="file-stats">
<a href="#5415e243f3972fc886bfe276b07b56f8e3134108">
lib/bx/seq/twobit_tests.py
</a>
</li>
<li class="file-stats">
<a href="#5711d464a2694473bbea6b7adf0658894a25324b">
lib/bx_extras/fpconst.py
</a>
</li>
<li class="file-stats">
<a href="#d2f2d46d1bd5907636e4d7cdb32d9e4cbcd61f19">
lib/bx_extras/lrucache.py
</a>
</li>
<li class="file-stats">
<a href="#99de5ef8e64234d63a1cea6ca4e3d7640d63b460">
lib/bx_extras/stats.py
</a>
</li>
<li class="file-stats">
<a href="#4e4336a100ab92aff37fc784daba7865edad7708">
<span class="new-file">
+
mypy.ini
</span>
</a>
</li>
<li class="file-stats">
<a href="#5d07e7d72637aa0d59c89d381fe6dc4cf46e2491">
pyproject.toml
</a>
</li>
<li class="file-stats">
<a href="#8ecb6c9ebeadf14ec5f756492d8cae3eb561285d">
script_tests/line_select_tests.py
</a>
</li>
<li class="file-stats">
<a href="#acc5f3e9190e5c295ea52492fe952cb38b3f3102">
script_tests/maf_select_tests.py
</a>
</li>
<li class="file-stats">
<a href="#5e13d51c89eaefc1a2d15f107f6bf87fb9dc02f8">
scripts/axt_to_lav.py
</a>
</li>
<li class="file-stats">
<a href="#5c685d7860deb9bda05a65dc542b740d20af6718">
scripts/axt_to_maf.py
</a>
</li>
<li class="file-stats">
<a href="#b2c7cb41ca9a13d70dddda3de8aee8c5a3cf7a95">
scripts/bed_build_windows.py
</a>
</li>
<li class="file-stats">
<a href="#471d0d6a2dc1338997a00001486499df3d83a9d9">
scripts/bed_complement.py
</a>
</li>
<li class="file-stats">
<a href="#dcd8d2010a291b730a1e0a4b6421ea914ae0ec08">
scripts/bed_coverage.py
</a>
</li>
<li class="file-stats">
<a href="#2055603c6c4a24e66aa2851c16cabd2ad76f8c0f">
scripts/bed_diff_basewise_summary.py
</a>
</li>
<li class="file-stats">
<a href="#ec8a1c3c0c6aa97214e2f13d45973cb5af32580f">
scripts/bed_extend_to.py
</a>
</li>
<li class="file-stats">
<a href="#74bcb8b63a8cc3111a8bbbd691821af142aa87d0">
scripts/bed_intersect_basewise.py
</a>
</li>
<li class="file-stats">
<a href="#e17ff8eee288b12833a6a7764b2ae48e0794eebf">
scripts/bed_merge_overlapping.py
</a>
</li>
<li class="file-stats">
<a href="#43cc43f2934ef28b9673210a564a4dcd745ccde8">
scripts/bed_rand_intersect.py
</a>
</li>
<li class="file-stats">
<a href="#07274c79981a73b3b778739fcd7dddb6f4e88a8e">
scripts/bed_subtract_basewise.py
</a>
</li>
<li class="file-stats">
<a href="#1d6b8c4ef31f8875bd83481aae3a1f9122dfd25f">
scripts/bnMapper.py
</a>
</li>
<li class="file-stats">
<a href="#86477a05ec5c977ba1464ae7340a6e7e7fc8f061">
scripts/div_snp_table_chr.py
</a>
</li>
<li class="file-stats">
<a href="#28606642a3cba21888669a94bfcd0b48c969b753">
scripts/find_in_sorted_file.py
</a>
</li>
<li class="file-stats">
<a href="#d577c72533cb6d38a67daed51d353c46fd7a4b42">
scripts/gene_fourfold_sites.py
</a>
</li>
<li class="file-stats">
<a href="#0999787f1346df0e535a46658ebe82ee20962867">
scripts/lav_to_axt.py
</a>
</li>
<li class="file-stats">
<a href="#907f106439f64c2e2c8083cfc4c47e238f6e6d3a">
scripts/lav_to_maf.py
</a>
</li>
<li class="file-stats">
<a href="#0523e541a409262a6085550bf4f90ff3093c0f12">
scripts/mMK_bitset.py
</a>
</li>
<li class="file-stats">
<a href="#49c5c449a394d074e812b9154ac5c4e8c5bd3b00">
scripts/maf_chop.py
</a>
</li>
<li class="file-stats">
<a href="#07c648daaff8f3c5b83b9ea2fede26e470014f1e">
scripts/maf_chunk.py
</a>
</li>
<li class="file-stats">
<a href="#7a347de49be7c3d25f7e6e291b8070f095e3d52e">
scripts/maf_col_counts.py
</a>
</li>
<li class="file-stats">
<a href="#59bc68d43b5c67b47658048847677423e5a2b29f">
scripts/maf_col_counts_all.py
</a>
</li>
<li class="file-stats">
<a href="#f1208d1fad96648e3638a560a5e5d47a6f31a8b2">
scripts/maf_covered_regions.py
</a>
</li>
<li class="file-stats">
<a href="#47da13d4a93c71732a57d942ff63db957873380e">
scripts/maf_div_sites.py
</a>
</li>
<li class="file-stats">
<a href="#ed6b1a673512a2621d2ec6ef1f98fcee759f9641">
scripts/maf_extract_ranges_indexed.py
</a>
</li>
<li class="file-stats">
<a href="#2f1b87f4b4045c88800753cfe6a4959ac43c416d">
scripts/maf_filter.py
</a>
</li>
<li class="file-stats">
<a href="#6f1ba69c49e1e17f8ce678109a0c4316480f3c5c">
scripts/maf_interval_alignibility.py
</a>
</li>
<li class="file-stats">
<a href="#cb7f81b0d76810bf174f80a03fa461744cc2f1ec">
scripts/maf_percent_columns_matching.py
</a>
</li>
<li class="file-stats">
<a href="#15e1ce006ebac81e20a36a574723cb24b84a7fb4">
scripts/maf_percent_identity.py
</a>
</li>
<li class="file-stats">
<a href="#c020b9ea404a952cda104e787d9af1a3729909d8">
scripts/maf_randomize.py
</a>
</li>
<li class="file-stats">
<a href="#5d83c921a889480e52e01136812764953c0e7ef0">
scripts/maf_species_in_all_files.py
</a>
</li>
<li class="file-stats">
<a href="#1daab6a143a3a600ce7250ca078a7e00c85fcf78">
scripts/maf_split_by_src.py
</a>
</li>
<li class="file-stats">
<a href="#67eeaacabdb9d35ddbce8c4637db77688289efa1">
scripts/maf_tile.py
</a>
</li>
<li class="file-stats">
<a href="#2e000ed44bf4d9558ea7718e073e2704b08d4aeb">
scripts/maf_tile_2.py
</a>
</li>
<li class="file-stats">
<a href="#5aa00a5d30c1fd3737dbcc884b3a2c95aea05a0e">
scripts/maf_tile_2bit.py
</a>
</li>
<li class="file-stats">
<a href="#5162b14d9b3c1f6a1316441ee977c1031dea7d8d">
scripts/maf_to_axt.py
</a>
</li>
<li class="file-stats">
<a href="#5426b96bc99712ccf99bf087559ea2f58d970066">
scripts/maf_to_concat_fasta.py
</a>
</li>
<li class="file-stats">
<a href="#24a73683b06eb8808c35cf7e5c54dda7010d5990">
scripts/maf_to_fasta.py
</a>
</li>
<li class="file-stats">
<a href="#8b8cfa0293e0ff599719f0b51925c733060914fa">
scripts/maf_truncate.py
</a>
</li>
<li class="file-stats">
<a href="#4dfb6a49c50e9f2ee52d96a6e05f263f23a29a1d">
scripts/maf_word_frequency.py
</a>
</li>
<li class="file-stats">
<a href="#a54adea9640e70ce75b1445f76b14a9643d448e4">
scripts/out_to_chain.py
</a>
</li>
<li class="file-stats">
<a href="#e77ba71cb3e2d5faf3c591b4b4af0eaf36c6df6a">
scripts/pretty_table.py
</a>
</li>
<li class="file-stats">
<a href="#1cf88e1f8bd49669ba0eff4aa5656e4f91b2b2a0">
scripts/tfloc_summary.py
</a>
</li>
<li class="file-stats">
<a href="#ab18113ee2482136a448aef32f947d3fe665c9c4">
scripts/wiggle_to_array_tree.py
</a>
</li>
<li class="file-stats">
<a href="#2d5352745f45493a93548925dcde3665fa42bf4d">
scripts/wiggle_to_chr_binned_array.py
</a>
</li>
<li class="file-stats">
<a href="#6fd985b7df9daf51ed8ba82b18996dcfc8f662c4">
scripts/wiggle_to_simple.py
</a>
</li>
<li class="file-stats">
<a href="#8c91c0296909b5ea3c496fde69e9dc44a6c6ae5f">
<span class="deleted-file">
−
setup.cfg
</span>
</a>
</li>
<li class="file-stats">
<a href="#61be067c7cf3bdbf8a6b021a2b5167eb30612d0c">
tox.ini
</a>
</li>
<li class="file-stats">
<a href="#d18fdca89adfa069813a58a4892bab1f06dc031b">
<span class="new-file">
+
zizmor.yml
</span>
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>
</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">
—
<br>
<a href="https://salsa.debian.org/med-team/python-bx/-/compare/cab4e23bc9f3a326c11671eb91d431e8b73d176f...c60efaca3edd5faca41a5b8cc7e5505a060abe1c">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> · <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<span style="color: transparent; font-size: 0; display: none; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0;">
Notification message regarding https://salsa.debian.org/med-team/python-bx/-/compare/cab4e23bc9f3a326c11671eb91d431e8b73d176f...c60efaca3edd5faca41a5b8cc7e5505a060abe1c at 1787899322
</span>
</p>
</div>
</body>
</html>