<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.0 Transitional//EN" "http://www.w3.org/TR/REC-html40/loose.dtd">
<html lang="en" style='--code-editor-font: var(--default-mono-font, "GitLab Mono"), JetBrains Mono, Menlo, DejaVu Sans Mono, Liberation Mono, Consolas, Ubuntu Mono, Courier New, andale mono, lucida console, monospace;'>
<head>
<meta content="text/html; charset=utf-8" http-equiv="Content-Type">
<title>
GitLab
</title>

<style data-premailer="ignore" type="text/css">
a { color: #1068bf; }
</style>


<style>img {
max-width: 100%; height: auto;
}
body {
font-size: .875rem;
}
body {
-webkit-text-shadow: hsla(0,0%,100%,.01) 0 0 1px;
}
body {
font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji"; font-size: inherit;
}
</style>
</head>
<body style='font-size: inherit; -webkit-text-shadow: hsla(0,0%,100%,.01) 0 0 1px; font-family: "GitLab Sans",-apple-system,BlinkMacSystemFont,"Segoe UI",Roboto,"Noto Sans",Ubuntu,Cantarell,"Helvetica Neue",sans-serif,"Apple Color Emoji","Segoe UI Emoji","Segoe UI Symbol","Noto Color Emoji";'>
<div class="content">

<h3 style="margin-top: 20px; margin-bottom: 10px;">
Andreas Tille pushed to branch debian/master at <a href="https://salsa.debian.org/med-team/relion">Debian Med / relion</a>
</h3>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
Commits:
</h4>
<ul>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/1c328b272819ca8bc561e3d78aad4c6a9c242d89">1c328b27</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:02:52+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Slight change on d/watch and mark changelog part from Pierre Gruet
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/92ff96958be1efe1bad4b0af7e00cb767f537971">92ff9695</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:03:37+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version 5.1.0+dfsg</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/7189e371361275da7018e8b8b20bb6a9d1b51334">7189e371</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:03:37+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>New upstream version
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/c569c1b85e35601f71b7db0b24c3a907774af881">c569c1b8</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:03:43+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Update upstream source from tag 'upstream/5.1.0+dfsg'

Update to upstream version '5.1.0+dfsg'
with Debian dir 0b4e18b3b91e32db14c5f5eee391f030b55ac9d9</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/d1ea87d0b2584a96edc02517761ebf95ebdbe70a">d1ea87d0</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:03:43+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Standards-Version: 4.7.4 (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/44beb4a0244b9d107c5e97ea85437c3f1f7f7243">44beb4a0</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:03:48+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Changes made by cme
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/f9dde9addc9ede0aaa13abfccf82fa009d84d742">f9dde9ad</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:04:24+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Build-Depends: pybuild-plugin-pyproject (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/5e2ca142e0cbb5cdbd20d41f309a29acf5f338c6">5e2ca142</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T09:04:31+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Add missing build-dependency on python3-setuptools.

This is necessary for build-backend setuptools.build_meta in pyproject.toml

Changes-By: lintian-brush
Fixes: lintian: relion source: missing-prerequisite-for-pyproject-backend setuptools.build_meta (does not satisfy python3-setuptools)
See-also: https://lintian.debian.org/tags/missing-prerequisite-for-pyproject-backend.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/9729c9323683450e5074a80841d08c28d28448d8">9729c932</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T09:04:32+01:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Remove unnecessary Team Upload line in changelog.

Changes-By: lintian-brush
Fixes: lintian: source: unnecessary-team-upload [debian/changelog:1]
See-also: https://lintian.debian.org/tags/unnecessary-team-upload.html
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/107889f6948c3d757baefe32ed420e7fe2c5792d">107889f6</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:04:38+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>debputy lint --auto-fix (routine-update)
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/189c07932b2d97445727f99289eb0e15746e1c9e">189c0793</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:10:19+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>d/copyright:

   - Do not mention removed src/Eigen
   - Use link to /usr/share/common-licenses/MPL-2.0 instead of full text
</pre>
</li>
<li>
<strong style="font-weight: 600;"><a href="https://salsa.debian.org/med-team/relion/-/commit/796ce5bb31c5772463c4a68e9b2de5f035f6b108">796ce5bb</a></strong>
<div>
<span> by Andreas Tille </span> <i> at 2026-09-24T10:14:02+02:00 </i>
</div>
<pre class="commit-message" style='white-space: pre-wrap; display: block; font-size: 14px; color: #3a383f; position: relative; font-family: "GitLab Mono", "JetBrains Mono", "Menlo", "DejaVu Sans Mono", "Liberation Mono", "Consolas", "Ubuntu Mono", "Courier New", "andale mono", "lucida console", monospace; font-variant-ligatures: none; word-break: break-all; word-wrap: break-word; background-color: #fbfafd; border-radius: 2px; margin: 0; padding: 8px 12px; border: 1px solid #dcdcde;'>Rebase patches to latest upstream version
</pre>
</li>
</ul>
<h4 style="margin-top: 10px; margin-bottom: 10px;">
88 changed files:
</h4>
<ul>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#825f5ce7f34d01a5d5305aa16ca3cfc63ad811bf">
cmake/BuildTypes.cmake
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#7dbe82544d79ee7fd9f0da48757284e95b75e1d5">
debian/patches/system-eigen.patch
</a>
</li>
<li class="file-stats">
<a href="#e0ece4a919b15a75c23178e379a8ca9c0870bb37">
debian/patches/typos.patch
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#54c391de2500e0856c23737daf64f9d931569110">
environment.yml
</a>
</li>
<li class="file-stats">
<a href="#fad84ab0d8cec01ee00aada29202563640b72fd3">
environment_blackwell.yml
โ†’
environment_pascal.yml
</a>
</li>
<li class="file-stats">
<a href="#ea72226ddcd91073c83a12902af5ede7d4444a5f">
<span class="new-file">
+
scripts/Schemes/amyprep/autopick_fom/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#de8ef476f7374580b27fb6fec5faa4b6f492c624">
<span class="new-file">
+
scripts/Schemes/amyprep/ctffind/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#88c516770a6007e67447a9dd6d1905659100ea3a">
<span class="new-file">
+
scripts/Schemes/amyprep/import/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#7ced47b71c4c5225b26add5a10bc955b840ad8d3">
<span class="new-file">
+
scripts/Schemes/amyprep/motioncorr/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#5c876a56027229723ae02ce87092c3d441418289">
<span class="new-file">
+
scripts/Schemes/amyprep/scheme.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#0ee11b18f7451d676d53573ce86ace789c0d7e00">
<span class="new-file">
+
scripts/Schemes/amyprep/select_mics/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#990c1f7a400f8317f4da125298ae2876636c4c77">
<span class="new-file">
+
scripts/Schemes/amyproc/autopick_trace/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#870e9f8c941a6f1fa021b8f7f29bfa865152824a">
<span class="new-file">
+
scripts/Schemes/amyproc/class2d/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#9569f280951af9ed5ab3436585c32ccbf2777980">
<span class="new-file">
+
scripts/Schemes/amyproc/extract/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#069402d0a63aa1de51b65819c8497bd067e250ea">
<span class="new-file">
+
scripts/Schemes/amyproc/scheme.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#aa1cc0d02c5f013a9a6e6d1ce3344a515b925f85">
<span class="new-file">
+
scripts/Schemes/amyproc/split/job.star
</span>
</a>
</li>
<li class="file-stats">
<a href="#349f4ac1efecd39c6bec2fc81b085b2ccf222317">
scripts/Schemes/proc/extract/job.star
</a>
</li>
<li class="file-stats">
<a href="#0eb0cf4b6046a9d6feda5d989810a391978bf841">
scripts/python_fetch_weights.in
</a>
</li>
<li class="file-stats">
<a href="#1e6cd3c9eb77269b5d023b214858735c8e497978">
<span class="new-file">
+
scripts/python_trace_amyloids.in
</span>
</a>
</li>
<li class="file-stats">
<a href="#5dcdc7a924f7051b12d9252e93a25aa4d3460fa6">
scripts/schemegui.py
โ†’
scripts/schemegui.in
</a>
</li>
<li class="file-stats">
<a href="#2bdcbe9ab3e2b5129931c3f7668a385db6bf2944">
<span class="new-file">
+
scripts/trace_amyloids.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#e97f365076a9691b01240c50a62281f2a71c464c">
src/CPlot2D.cpp
</a>
</li>
<li class="file-stats">
<a href="#1e4a7eaa6f598d062440e9b744df85bd731be743">
src/acc/acc_ml_optimiser_impl.h
</a>
</li>
<li class="file-stats">
<a href="#64bf4ea9620517a2fe25144e011ac62a3d25f185">
src/align_tiltseries_runner.cpp
</a>
</li>
<li class="file-stats">
<a href="#037766881c585e7eb0196cf480cf1ea96a099a1f">
src/align_tiltseries_runner.h
</a>
</li>
<li class="file-stats">
<a href="#be5ce74173ccc88518417a6b765de86bd7b80147">
<span class="new-file">
+
src/amyloid_finder.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ee14b4c91e76c698f3a1911fb6307b79fd8c8e">
<span class="new-file">
+
src/amyloid_finder.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#ac6bb1350d0ffce2b47bbbadc6e7a7a9ea8d4aef">
<span class="new-file">
+
src/amyloid_finder_mpi.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#da74a35c153db8da5722f133241b311c5d47d7a3">
<span class="new-file">
+
src/amyloid_finder_mpi.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#1c3bee2275ae807c27337199e05d4b15ed936d5e">
src/apps/CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#13bf0504afa4a4c19930875abdda8c7a72e969bb">
<span class="new-file">
+
src/apps/find_amyloid.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c67d13683b218896cef1a2f9ccad59ddac35062">
<span class="new-file">
+
src/apps/find_amyloid_mpi.cpp
</span>
</a>
</li>
<li class="file-stats">
<a href="#419bed9392a46cd38d3d248a50e1e7797b2fbfab">
src/apps/image_handler.cpp
</a>
</li>
<li class="file-stats">
<a href="#4a24d273a0ed006f4752abbb87a1210ff8bd540a">
src/apps/import.cpp
</a>
</li>
<li class="file-stats">
<a href="#9145a7888be6b32ca377af5868e393158fcb5e06">
src/apps/maingui.cpp
</a>
</li>
<li class="file-stats">
<a href="#5b687e307e3c9997286db14e74bcf5015ecb638f">
src/apps/particle_symmetry_expand.cpp
</a>
</li>
<li class="file-stats">
<a href="#bb6e63108724890279781018c93c08cdf62e5337">
src/apps/project.cpp
</a>
</li>
<li class="file-stats">
<a href="#344d6a46c19e09113e50c3b9b225dbda8bd72df7">
src/apps/pseudotomo_expansion.cpp
</a>
</li>
<li class="file-stats">
<a href="#92aa32b6d934df4c98fb1d0da48322edbb60bd72">
src/apps/star_handler.cpp
</a>
</li>
<li class="file-stats">
<a href="#6c48c4ffdc49ed5b7125e14e0f8326e4c18fd7a8">
src/autopicker.cpp
</a>
</li>
<li class="file-stats">
<a href="#34416dae67329cdec0244eb495880ecfeea226a3">
src/backprojector.cpp
</a>
</li>
<li class="file-stats">
<a href="#0dbafe5c6dda8cdffd504a938f336d4fbe91641b">
src/backprojector.h
</a>
</li>
<li class="file-stats">
<a href="#5dc3bcd70662b4be9523c09d0c8b065ad00c7b9e">
src/ctffind_runner.cpp
</a>
</li>
<li class="file-stats">
<a href="#f43fddfe3a0a9e4a1588863c9c1adf6e23b13064">
src/ctffind_runner.h
</a>
</li>
<li class="file-stats">
<a href="#7955d1ad1f72e17f06d15134971ad71518820e07">
src/displayer.cpp
</a>
</li>
<li class="file-stats">
<a href="#87210352042ad69ad53fb7d3fa96099b660313bb">
src/displayer.h
</a>
</li>
<li class="file-stats">
<a href="#9fab1a669d0e202dbfe6a550e057e6db2336513d">
src/exp_model.cpp
</a>
</li>
<li class="file-stats">
<a href="#8e8bce082576053a5916621d4fbdeb653f68ebed">
src/gui_background.xpm
</a>
</li>
<li class="file-stats">
<a href="#75b7c6d6750d41d629523e6599872311b6f375f9">
src/gui_entries.h
</a>
</li>
<li class="file-stats">
<a href="#9c2effce620d926286f548e70d4e2c978466630a">
src/gui_jobwindow.cpp
</a>
</li>
<li class="file-stats">
<a href="#984353a800d141e50c48c0b461ec4c8fcf3f8bf8">
src/gui_jobwindow.h
</a>
</li>
<li class="file-stats">
<a href="#e700ba33399b8e581c17cf606f7e11fbae40d5c3">
src/gui_mainwindow.cpp
</a>
</li>
<li class="file-stats">
<a href="#b2cf4809b99f640f2be7112ac5f2f914932f3d2b">
src/helix.cpp
</a>
</li>
<li class="file-stats">
<a href="#8f948ce30854db073de08c8d3716112b3ca37c89">
src/helix.h
</a>
</li>
<li class="file-stats">
<a href="#19dc810a7769ebec50cfbfb97af1b75f17ae55e3">
src/jaz/tomography/programs/align.cpp
</a>
</li>
<li class="file-stats">
<a href="#29aedecff7fd7340d6ef27361f51d3c4ccd5e8cf">
src/jaz/tomography/programs/reconstruct_tomogram.cpp
</a>
</li>
<li class="file-stats">
<a href="#2dbc90f4397ab58b741863eda3b635dc03f40587">
src/jaz/tomography/programs/reconstruct_tomogram.h
</a>
</li>
<li class="file-stats">
<a href="#3e9d29c11b1397c35512a2fad5ab5d8fa0c2623a">
src/jaz/tomography/programs/subtomo.cpp
</a>
</li>
<li class="file-stats">
<a href="#def8c7dbf88d575867d4dd9eb03eddaa2b9cec41">
src/jaz/tomography/programs/subtomo.h
</a>
</li>
<li class="file-stats">
<a href="#274585ad23738319735e55329ed80915a55a6bc3">
src/jaz/tomography/programs/subtomo_mpi.cpp
</a>
</li>
<li class="file-stats">
<a href="#62718b639cfba5b469b044a791500d84a4b00352">
src/jaz/tomography/tomogram_set.cpp
</a>
</li>
<li class="file-stats">
<a href="#65adc7dc670989ed326f77efb16a0272c941e950">
src/jaz/tomography/tomogram_set.h
</a>
</li>
<li class="file-stats">
<a href="#02219f5699e844006855d5c79ea6ee5b74f57cf7">
src/local_symmetry.cpp
</a>
</li>
<li class="file-stats">
<a href="#8d08f289336dc4d9003ee968ec1ee12b0955c939">
src/local_symmetry.h
</a>
</li>
<li class="file-stats">
<a href="#2481534ec5d1d727314f4337a7d7401d6da373ef">
src/local_symmetry_mpi.cpp
</a>
</li>
<li class="file-stats">
<a href="#763f9e1edf8f1009d95b6f3c26eb409fe2b66035">
src/macros.h
</a>
</li>
<li class="file-stats">
<a href="#e79e73a6ae4ae163888f7ce2a523288ddfa79cdc">
src/manualpicker.cpp
</a>
</li>
<li class="file-stats">
<a href="#2d2a0158a9622f92ea7b6cfb64207060ad16e7f3">
src/metadata_label.h
</a>
</li>
<li class="file-stats">
<a href="#702c8282d7873ce3230c6ae9026007e6cce9c4a0">
src/metadata_table.cpp
</a>
</li>
<li class="file-stats">
<a href="#bb66fcf0000b6c3bb3e718bfa70b1697d290d01c">
src/metadata_table.h
</a>
</li>
<li class="file-stats">
<a href="#22da530327588dba7839d92e575dfe30831b194f">
src/ml_optimiser.cpp
</a>
</li>
<li class="file-stats">
<a href="#1f777665b5535eac93b86e211b056abfe4a84462">
src/ml_optimiser.h
</a>
</li>
<li class="file-stats">
<a href="#4f48d1f21d52e0e0cb426caa16dbfd2975769e3d">
src/ml_optimiser_mpi.cpp
</a>
</li>
<li class="file-stats">
<a href="#e000b71cca024ab3dc63e7da47571751a9971fa9">
src/motioncorr_runner.cpp
</a>
</li>
<li class="file-stats">
<a href="#93f019ece96268e45a01b4ff703abe80dd92dcd0">
src/particle_subtractor.cpp
</a>
</li>
<li class="file-stats">
<a href="#3b2c883323742c55aee298126e0e800ecdf1f284">
src/pipeline_jobs.cpp
</a>
</li>
<li class="file-stats">
<a href="#850980cef28ccc1b795bf32cf45701146bb82558">
src/pipeline_jobs.h
</a>
</li>
<li class="file-stats">
<a href="#8abba8b501f2ffed2e56f6692ac7c2d09fce5b71">
src/preprocessing.cpp
</a>
</li>
<li class="file-stats">
<a href="#cfb436f0571168b94a66738bb1457be12925beda">
src/preprocessing.h
</a>
</li>
<li class="file-stats">
<a href="#9230083b061968f8677e08ec2c40cc67c04980bc">
src/reconstructor.cpp
</a>
</li>
<li class="file-stats">
<a href="#13c6c18efb90650efb39289fca27a3b9cf7232ce">
src/reconstructor.h
</a>
</li>
<li class="file-stats">
<a href="#595770ff883a2e1a0d5eedfd363455798ae80d78">
src/tomography_python_programs/get_particle_poses/filaments.py
</a>
</li>
<li class="file-stats">
<a href="#c62459b166a334e6529175340eedeee6977df0ca">
tests/CMakeLists.txt
</a>
</li>
</ul>
<h5 style="margin-top: 10px; margin-bottom: 10px; font-size: .875rem;">
The diff was not included because it is too large.
</h5>

</div>
<div class="footer" style="margin-top: 10px;">
<p style="font-size: small; color: #626168;">
โ€”
<br>
<a href="https://salsa.debian.org/med-team/relion/-/compare/bd62d44268a9c3f492b76cf76e8dd81d09057fd9...796ce5bb31c5772463c4a68e9b2de5f035f6b108">View it on GitLab</a>.
<br>
You're receiving this email because of your account on <a target="_blank" rel="noopener noreferrer" href="https://salsa.debian.org">salsa.debian.org</a>. <a href="https://salsa.debian.org/-/profile/notifications" target="_blank" rel="noopener noreferrer" class="mng-notif-link">Manage all notifications</a> ยท <a href="https://salsa.debian.org/help" target="_blank" rel="noopener noreferrer" class="help-link">Help</a>
<span style="color: transparent; font-size: 0; display: none; overflow: hidden; opacity: 0; width: 0; height: 0; max-width: 0; max-height: 0;">
Notification message regarding https://salsa.debian.org/med-team/relion/-/compare/bd62d44268a9c3f492b76cf76e8dd81d09057fd9...796ce5bb31c5772463c4a68e9b2de5f035f6b108 at 1790238162
</span>



</p>
</div>
</body>
</html>