[Debian-med-packaging] Bug#671524: Dropping coverage patch in Samtools ?

[Charles Plessy]

> On Wed, Nov 26, 2014 at 3:49 AM, Charles Plessy <plessy at debian.org> wrote:
> 
> > in recent versions of samtools, the mpileup command has a new option to
> > specify the coverage at run time.
> >
> > Would it be fine to drop our patch that was raising the default coverage
> > cap from 8,000 to 1,000,000 ?  If yes, do you think we need to mention it
> > as a NEWS entry ?

Le Wed, Nov 26, 2014 at 02:27:22PM -0500, Dominique Belhachemi a écrit :
> 
> I think we still need the patch. samtools depth doesn't support the -d flag.

Hi Dominique,

in my latest upload, I delete the patches by mistake.  But on the other hand,
I see that you solved the issue upstream in the meantime.

    https://github.com/samtools/samtools/pull/375

Unless we need a new upload before version 1.3, shall we just wait ?

Have a nice day,

-- 
Charles