[Debian-med-packaging] Bug#880347: bioperl-run: FTBFS: Test failures

[Lucas Nussbaum]

Source: bioperl-run
Version: 1.7.2-1
Severity: serious
Tags: buster sid
User: debian-qa at lists.debian.org
Usertags: qa-ftbfs-20171030 qa-ftbfs
Justification: FTBFS on amd64

Hi,

During a rebuild of all packages in sid, your package failed to build on
amd64.

Relevant part (hopefully):
> ok 9 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not present
> ok 10 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not present
> ok 11 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not present
> ok 12 # skip Required executable for Bio::Tools::Run::tRNAscanSE is not present
> ok
> 
> Test Summary Report
> -------------------
> t/Bowtie.t                  (Wstat: 512 Tests: 61 Failed: 2)
>   Failed tests:  43, 45
>   Non-zero exit status: 2
> Files=72, Tests=1690, 156 wallclock secs ( 0.24 usr  0.07 sys + 133.72 cusr  6.41 csys = 140.44 CPU)
> Result: FAIL
> Failed 1/72 test programs. 2/1690 subtests failed.
> dh_auto_test: perl Build test --verbose 1 returned exit code 255
> debian/rules:32: recipe for target 'override_dh_auto_test' failed

The full build log is available from:
   http://aws-logs.debian.net/2017/10/30/bioperl-run_1.7.2-1_unstable.log

A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!

About the archive rebuild: The rebuild was done on EC2 VM instances from
Amazon Web Services, using a clean, minimal and up-to-date chroot. Every
failed build was retried once to eliminate random failures.