[Debian-med-packaging] Bug#1044407: emboss-explorer: Fails to build source after successful build

[Lucas Nussbaum]

Source: emboss-explorer
Version: 2.2.0-11
Severity: minor
Tags: trixie sid ftbfs
User: lucas at debian.org
Usertags: ftbfs-sab-20230813 ftbfs-source-after-build
User: debian-qa at lists.debian.org
Usertags: qa-doublebuild

Hi,

This package fails to build a source package after a successful build
(dpkg-buildpackage ; dpkg-buildpackage -S).

This is probably a clear violation of Debian Policy section 4.9 (clean target),
but this is filed as severity:minor for now, because a discussion on
debian-devel showed that we might want to revisit the requirement of a working
'clean' target.

More information about this class of issues, included common problems and
solutions, is available at
https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild

Relevant part of the build log:
> cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S
> -------------------------------------------------------------------------------------------------------------------------------------
> 
> dpkg-buildpackage: info: source package emboss-explorer
> dpkg-buildpackage: info: source version 2.2.0-11
> dpkg-buildpackage: info: source distribution unstable
> dpkg-buildpackage: info: source changed by Andreas Tille <tille at debian.org>
>  dpkg-source --before-build .
>  debian/rules clean
> dh clean --with apache2
>    dh_auto_clean
> 	make -j8 distclean
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> rm -f \
>   blib/script/acdcheck blib/script/mkstatic 
> "/usr/bin/perl" "-MExtUtils::Manifest=fullcheck" -e fullcheck
> rm -f \
>   GUI.bso GUI.def \
>   GUI.exp GUI.x \
>    blib/arch/auto/EMBOSS/GUI/extralibs.all \
>   blib/arch/auto/EMBOSS/GUI/extralibs.ld Makefile.aperl \
>   *.a *.o \
>   *perl.core MYMETA.json \
>   MYMETA.yml blibdirs.ts \
>   core core.*perl.*.? \
>   core.[0-9] core.[0-9][0-9] \
>   core.[0-9][0-9][0-9] core.[0-9][0-9][0-9][0-9] \
>   core.[0-9][0-9][0-9][0-9][0-9] libGUI.def \
>   mon.out perl \
>   perl perl.exe \
>   perlmain.c pm_to_blib \
>   pm_to_blib.ts so_locations \
>   tmon.out 
> rm -rf \
>   blib 
> mv Makefile Makefile.old > /dev/null 2>&1
> rm -f \
>   Makefile Makefile.old 
> rm -rf \
>   EMBOSS-GUI-2.1 
> /<<PKGBUILDDIR>>/debian/emboss-explorer/usr/share/emboss-explorer/html/style is encountered a second time at /usr/share/perl/5.36/File/Find.pm line 78.
> make[1]: *** [Makefile:611: distcheck] Error 2
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_clean: error: make -j8 distclean returned exit code 2
> make: *** [debian/rules:6: clean] Error 25
> dpkg-buildpackage: error: debian/rules clean subprocess returned exit status 2
> 
> E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run.


The full build log is available from:
http://qa-logs.debian.net/2023/08/13/emboss-explorer_2.2.0-11_unstable.log

If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects

If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.