[Debian-med-packaging] Bug#1062238: libbpp-raa: NMU diff for 64-bit time_t transition
Lukas Märdian
slyon at debian.org
Thu Feb 29 09:35:33 GMT 2024
Dear maintainer,
Please find attached a final version of this patch for the time_t
transition. This patch is being uploaded to unstable.
Note that this adds a versioned build-dependency on dpkg-dev, to guard
against accidental backports with a wrong ABI.
Thanks!
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-21-generic (SMP w/4 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE
Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: systemd (via /run/systemd/system)
-------------- next part --------------
diff -Nru libbpp-raa-2.4.1/debian/changelog libbpp-raa-2.4.1/debian/changelog
--- libbpp-raa-2.4.1/debian/changelog 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/changelog 2024-02-29 09:35:26.000000000 +0000
@@ -1,3 +1,10 @@
+libbpp-raa (2.4.1-7.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition. Closes: #1062238
+
+ -- Lukas M?rdian <slyon at debian.org> Thu, 29 Feb 2024 09:35:26 +0000
+
libbpp-raa (2.4.1-7) unstable; urgency=medium
* Fix watch file
diff -Nru libbpp-raa-2.4.1/debian/control libbpp-raa-2.4.1/debian/control
--- libbpp-raa-2.4.1/debian/control 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/control 2024-02-29 09:35:26.000000000 +0000
@@ -4,9 +4,9 @@
Andreas Tille <tille at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 13),
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
cmake,
- d-shlibs,
+ d-shlibs (>= 0.106~),
zlib1g-dev,
libbpp-seq-dev
Standards-Version: 4.6.1
@@ -18,7 +18,7 @@
Package: libbpp-raa-dev
Architecture: any
Section: libdevel
-Depends: libbpp-raa4 (= ${binary:Version}),
+Depends: libbpp-raa4t64 (= ${binary:Version}),
${misc:Depends},
libbpp-seq-dev
Multi-Arch: same
@@ -29,7 +29,10 @@
.
This package contains header files and static library.
-Package: libbpp-raa4
+Package: libbpp-raa4t64
+Provides: ${t64:Provides}
+Replaces: libbpp-raa4
+Conflicts: libbpp-raa4 (<< ${source:Version})
Architecture: any
Section: libs
Depends: ${shlibs:Depends},
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64
--- libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4.symbols.amd64 1970-01-01 00:00:00.000000000 +0000
@@ -1,186 +0,0 @@
-libbpp-raa.so.4 libbpp-raa4 #MINVER#
- _ZN3bpp14RaaSpeciesTree10firstChildEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree11nextSynonymEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5countEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6getTidEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree6parentEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree7isChildEii at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8findNodeEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree8getMajorEi at Base 2.4.1
- _ZN3bpp14RaaSpeciesTree9nextChildEii at Base 2.4.1
- _ZN3bpp16BadCharExceptionD0Ev at Base 2.4.1
- _ZN3bpp16BadCharExceptionD1Ev at Base 2.4.1
- _ZN3bpp16BadCharExceptionD2Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD0Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD1Ev at Base 2.4.1
- _ZN3bpp17AlphabetExceptionD2Ev at Base 2.4.1
- _ZN3bpp3RAA10deleteListEPNS_7RaaListE at Base 2.4.1
- _ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_ at Base 2.4.1
- _ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 2.4.1
- _ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_ at Base 2.4.1
- _ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA12translateCDSEi at Base 2.4.1
- _ZN3bpp3RAA13closeDatabaseEv at Base 2.4.1
- _ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA13getAttributesEi at Base 2.4.1
- _ZN3bpp3RAA14getNextFeatureEPv at Base 2.4.1
- _ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_ at Base 2.4.1
- _ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE at Base 2.4.1
- _ZN3bpp3RAA15loadSpeciesTreeEb at Base 2.4.1
- _ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_ at Base 2.4.1
- _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei at Base 2.4.1
- _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA18translateInitCodonEi at Base 2.4.1
- _ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE at Base 2.4.1
- _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev at Base 2.4.1
- _ZN3bpp3RAA22getCurrentAnnotAddressEv at Base 2.4.1
- _ZN3bpp3RAA22interruptGetAnyFeatureEPv at Base 2.4.1
- _ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 2.4.1
- _ZN3bpp3RAA6getSeqEii at Base 2.4.1
- _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
- _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
- _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZN3bpp3RAAD1Ev at Base 2.4.1
- _ZN3bpp3RAAD2Ev at Base 2.4.1
- _ZN3bpp7RaaList10addElementEi at Base 2.4.1
- _ZN3bpp7RaaList11nextElementEv at Base 2.4.1
- _ZN3bpp7RaaList11parentsOnlyEv at Base 2.4.1
- _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList12firstElementEv at Base 2.4.1
- _ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp7RaaList12residueCountB5cxx11Ev at Base 2.4.1
- _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList13removeElementEi at Base 2.4.1
- _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E at Base 2.4.1
- _ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
- _ZN3bpp7RaaList7setFromEi at Base 2.4.1
- _ZN3bpp7RaaList8getCountEv at Base 2.4.1
- _ZN3bpp7RaaList8isInListEi at Base 2.4.1
- _ZN3bpp7RaaList8zeroListEv at Base 2.4.1
- _ZN3bpp7RaaListC1Ev at Base 2.4.1
- _ZN3bpp7RaaListC2Ev at Base 2.4.1
- _ZNK3bpp17AlphabetException11getAlphabetEv at Base 2.4.1
- _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
- _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
- _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 2.4.1
- _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 2.4.1
- _ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_ at Base 2.4.1
- _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
- ajout_reponse at Base 2.4.1
- aminoacids at Base 2.4.1
- atoi_u at Base 2.4.1
- calc_codon_number at Base 2.4.1
- chg_acnuc at Base 2.4.1
- clear_reponse at Base 2.4.1
- close_sock_gz_r at Base 2.4.1
- codaa at Base 2.4.1
- compact at Base 2.4.1
- compch at Base 2.4.1
- complementer_base at Base 2.4.1
- complementer_seq at Base 2.4.1
- genetic_code at Base 2.4.1
- get_acnuc_gc_number at Base 2.4.1
- get_code_descr at Base 2.4.1
- get_ncbi_gc_number at Base 2.4.1
- gets_no_echo at Base 2.4.1
- init_codon_to_aa at Base 2.4.1
- initreponse at Base 2.4.1
- majuscules at Base 2.4.1
- mycalloc at Base 2.4.1
- notrail2 at Base 2.4.1
- padtosize at Base 2.4.1
- parse at Base 2.4.1
- prepare_sock_gz_r at Base 2.4.1
- prepch at Base 2.4.1
- print_raa_long at Base 2.4.1
- raa_1_coordinate_set at Base 2.4.1
- raa_MD5String at Base 2.4.1
- raa_acnucclose at Base 2.4.1
- raa_acnucopen at Base 2.4.1
- raa_acnucopen_alt at Base 2.4.1
- raa_alllistranks at Base 2.4.1
- raa_bcount at Base 2.4.1
- raa_bit0 at Base 2.4.1
- raa_bit1 at Base 2.4.1
- raa_btest at Base 2.4.1
- raa_copylist at Base 2.4.1
- raa_countfilles at Base 2.4.1
- raa_decode_address at Base 2.4.1
- raa_error_mess_proc at Base 2.4.1
- raa_fcode at Base 2.4.1
- raa_followshrt2 at Base 2.4.1
- raa_get_taxon_info at Base 2.4.1
- raa_getattributes at Base 2.4.1
- raa_getemptylist at Base 2.4.1
- raa_getlistrank at Base 2.4.1
- raa_getliststate at Base 2.4.1
- raa_gfrag at Base 2.4.1
- raa_ghelp at Base 2.4.1
- raa_iknum at Base 2.4.1
- raa_isenum at Base 2.4.1
- raa_knowndbs at Base 2.4.1
- raa_loadtaxonomy at Base 2.4.1
- raa_modifylist at Base 2.4.1
- raa_next_annots at Base 2.4.1
- raa_nexteltinlist at Base 2.4.1
- raa_nexteltinlist_annots at Base 2.4.1
- raa_nextmatchkey at Base 2.4.1
- raa_open_socket at Base 2.4.1
- raa_opendb at Base 2.4.1
- raa_opendb_pw at Base 2.4.1
- raa_prep_acnuc_query at Base 2.4.1
- raa_prep_coordinates at Base 2.4.1
- raa_proc_query at Base 2.4.1
- raa_read_annots at Base 2.4.1
- raa_read_first_rec at Base 2.4.1
- raa_readacc at Base 2.4.1
- raa_readext at Base 2.4.1
- raa_readkey at Base 2.4.1
- raa_readlng at Base 2.4.1
- raa_readloc at Base 2.4.1
- raa_readshrt at Base 2.4.1
- raa_readsmj at Base 2.4.1
- raa_readspec at Base 2.4.1
- raa_readsub at Base 2.4.1
- raa_readsub_pannots at Base 2.4.1
- raa_releaselist at Base 2.4.1
- raa_residuecount at Base 2.4.1
- raa_savelist at Base 2.4.1
- raa_seq_to_annots at Base 2.4.1
- raa_seqrank_attributes at Base 2.4.1
- raa_setlistname at Base 2.4.1
- raa_setliststate at Base 2.4.1
- raa_short_descr at Base 2.4.1
- raa_translate_cds at Base 2.4.1
- raa_translate_init_codon at Base 2.4.1
- raa_zerolist at Base 2.4.1
- read_sock at Base 2.4.1
- read_sock_timeout at Base 2.4.1
- scan_raa_long at Base 2.4.1
- sock_flush at Base 2.4.1
- sock_fputs at Base 2.4.1
- sock_printf at Base 2.4.1
- strcmptrail at Base 2.4.1
- totcodes at Base 2.4.1
- trim_key at Base 2.4.1
- unprotect_quotes at Base 2.4.1
- val at Base 2.4.1
- z_getc at Base 2.4.1
- z_gets at Base 2.4.1
- z_read_sock at Base 2.4.1
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides
--- libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4t64.lintian-overrides 2024-02-29 09:33:34.000000000 +0000
@@ -0,0 +1 @@
+libbpp-raa4t64: package-name-doesnt-match-sonames libbpp-raa4
diff -Nru libbpp-raa-2.4.1/debian/libbpp-raa4t64.symbols.amd64 libbpp-raa-2.4.1/debian/libbpp-raa4t64.symbols.amd64
--- libbpp-raa-2.4.1/debian/libbpp-raa4t64.symbols.amd64 1970-01-01 00:00:00.000000000 +0000
+++ libbpp-raa-2.4.1/debian/libbpp-raa4t64.symbols.amd64 2024-02-29 09:35:22.000000000 +0000
@@ -0,0 +1,186 @@
+libbpp-raa.so.4 libbpp-raa4t64 #MINVER#
+ _ZN3bpp14RaaSpeciesTree10firstChildEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree11nextSynonymEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree5countEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree5labelB5cxx11Ei at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree6getTidEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree6parentEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree7getNameB5cxx11Ei at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree7isChildEii at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8findNodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEb at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8findNodeEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree8getMajorEi at Base 2.4.1
+ _ZN3bpp14RaaSpeciesTree9nextChildEii at Base 2.4.1
+ _ZN3bpp16BadCharExceptionD0Ev at Base 2.4.1
+ _ZN3bpp16BadCharExceptionD1Ev at Base 2.4.1
+ _ZN3bpp16BadCharExceptionD2Ev at Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD0Ev at Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD1Ev at Base 2.4.1
+ _ZN3bpp17AlphabetExceptionD2Ev at Base 2.4.1
+ _ZN3bpp3RAA10deleteListEPNS_7RaaListE at Base 2.4.1
+ _ZN3bpp3RAA10getSeqFragERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiiRS6_ at Base 2.4.1
+ _ZN3bpp3RAA10getSeqFragEiiiRNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA11getSeq_bothERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEii at Base 2.4.1
+ _ZN3bpp3RAA12openDatabaseERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPFPcPvESA_ at Base 2.4.1
+ _ZN3bpp3RAA12processQueryERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp3RAA12translateCDSERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA12translateCDSEi at Base 2.4.1
+ _ZN3bpp3RAA13closeDatabaseEv at Base 2.4.1
+ _ZN3bpp3RAA13getAttributesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA13getAttributesEi at Base 2.4.1
+ _ZN3bpp3RAA14getNextFeatureEPv at Base 2.4.1
+ _ZN3bpp3RAA14keywordPatternERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA14knownDatabasesERSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EESA_ at Base 2.4.1
+ _ZN3bpp3RAA15createEmptyListERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp3RAA15freeSpeciesTreeEPNS_14RaaSpeciesTreeE at Base 2.4.1
+ _ZN3bpp3RAA15loadSpeciesTreeEb at Base 2.4.1
+ _ZN3bpp3RAA16getDirectFeatureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_S8_S8_ at Base 2.4.1
+ _ZN3bpp3RAA16getNextAnnotLineB5cxx11Ev at Base 2.4.1
+ _ZN3bpp3RAA17getFirstAnnotLineB5cxx11Ei at Base 2.4.1
+ _ZN3bpp3RAA18listAllFeatureKeysB5cxx11Ev at Base 2.4.1
+ _ZN3bpp3RAA18translateInitCodonEi at Base 2.4.1
+ _ZN3bpp3RAA19nextMatchingKeywordERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA20prepareGetAnyFeatureEiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAA21getAnnotLineAtAddressB5cxx11ENS_10RaaAddressE at Base 2.4.1
+ _ZN3bpp3RAA21listDirectFeatureKeysB5cxx11Ev at Base 2.4.1
+ _ZN3bpp3RAA22getCurrentAnnotAddressEv at Base 2.4.1
+ _ZN3bpp3RAA22interruptGetAnyFeatureEPv at Base 2.4.1
+ _ZN3bpp3RAA6getSeqERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEi at Base 2.4.1
+ _ZN3bpp3RAA6getSeqEii at Base 2.4.1
+ _ZN3bpp3RAAC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
+ _ZN3bpp3RAAC1EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAAC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEiS8_ at Base 2.4.1
+ _ZN3bpp3RAAC2EiRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZN3bpp3RAAD1Ev at Base 2.4.1
+ _ZN3bpp3RAAD2Ev at Base 2.4.1
+ _ZN3bpp7RaaList10addElementEi at Base 2.4.1
+ _ZN3bpp7RaaList11nextElementEv at Base 2.4.1
+ _ZN3bpp7RaaList11parentsOnlyEv at Base 2.4.1
+ _ZN3bpp7RaaList12LIST_SPECIESB5cxx11E at Base 2.4.1
+ _ZN3bpp7RaaList12firstElementEv at Base 2.4.1
+ _ZN3bpp7RaaList12modifyByDateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp7RaaList12residueCountB5cxx11Ev at Base 2.4.1
+ _ZN3bpp7RaaList13LIST_KEYWORDSB5cxx11E at Base 2.4.1
+ _ZN3bpp7RaaList13removeElementEi at Base 2.4.1
+ _ZN3bpp7RaaList14LIST_SEQUENCESB5cxx11E at Base 2.4.1
+ _ZN3bpp7RaaList14modifyByLengthERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_ at Base 2.4.1
+ _ZN3bpp7RaaList7setFromEi at Base 2.4.1
+ _ZN3bpp7RaaList8getCountEv at Base 2.4.1
+ _ZN3bpp7RaaList8isInListEi at Base 2.4.1
+ _ZN3bpp7RaaList8zeroListEv at Base 2.4.1
+ _ZN3bpp7RaaListC1Ev at Base 2.4.1
+ _ZN3bpp7RaaListC2Ev at Base 2.4.1
+ _ZNK3bpp17AlphabetException11getAlphabetEv at Base 2.4.1
+ _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
+ _ZNSt12_Vector_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_default_appendEm at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_ at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev at Base 2.4.1
+ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev at Base 2.4.1
+ _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC1IS3_EEPKcRKS3_ at Base 2.4.1
+ _ZNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEC2IS3_EEPKcRKS3_ at Base 2.4.1
+ _ZSt18__do_uninit_fill_nIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEmS5_ET_S7_T0_RKT1_ at Base 2.4.1
+ _ZTINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ _ZTSNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE at Base 2.4.1
+ ajout_reponse at Base 2.4.1
+ aminoacids at Base 2.4.1
+ atoi_u at Base 2.4.1
+ calc_codon_number at Base 2.4.1
+ chg_acnuc at Base 2.4.1
+ clear_reponse at Base 2.4.1
+ close_sock_gz_r at Base 2.4.1
+ codaa at Base 2.4.1
+ compact at Base 2.4.1
+ compch at Base 2.4.1
+ complementer_base at Base 2.4.1
+ complementer_seq at Base 2.4.1
+ genetic_code at Base 2.4.1
+ get_acnuc_gc_number at Base 2.4.1
+ get_code_descr at Base 2.4.1
+ get_ncbi_gc_number at Base 2.4.1
+ gets_no_echo at Base 2.4.1
+ init_codon_to_aa at Base 2.4.1
+ initreponse at Base 2.4.1
+ majuscules at Base 2.4.1
+ mycalloc at Base 2.4.1
+ notrail2 at Base 2.4.1
+ padtosize at Base 2.4.1
+ parse at Base 2.4.1
+ prepare_sock_gz_r at Base 2.4.1
+ prepch at Base 2.4.1
+ print_raa_long at Base 2.4.1
+ raa_1_coordinate_set at Base 2.4.1
+ raa_MD5String at Base 2.4.1
+ raa_acnucclose at Base 2.4.1
+ raa_acnucopen at Base 2.4.1
+ raa_acnucopen_alt at Base 2.4.1
+ raa_alllistranks at Base 2.4.1
+ raa_bcount at Base 2.4.1
+ raa_bit0 at Base 2.4.1
+ raa_bit1 at Base 2.4.1
+ raa_btest at Base 2.4.1
+ raa_copylist at Base 2.4.1
+ raa_countfilles at Base 2.4.1
+ raa_decode_address at Base 2.4.1
+ raa_error_mess_proc at Base 2.4.1
+ raa_fcode at Base 2.4.1
+ raa_followshrt2 at Base 2.4.1
+ raa_get_taxon_info at Base 2.4.1
+ raa_getattributes at Base 2.4.1
+ raa_getemptylist at Base 2.4.1
+ raa_getlistrank at Base 2.4.1
+ raa_getliststate at Base 2.4.1
+ raa_gfrag at Base 2.4.1
+ raa_ghelp at Base 2.4.1
+ raa_iknum at Base 2.4.1
+ raa_isenum at Base 2.4.1
+ raa_knowndbs at Base 2.4.1
+ raa_loadtaxonomy at Base 2.4.1
+ raa_modifylist at Base 2.4.1
+ raa_next_annots at Base 2.4.1
+ raa_nexteltinlist at Base 2.4.1
+ raa_nexteltinlist_annots at Base 2.4.1
+ raa_nextmatchkey at Base 2.4.1
+ raa_open_socket at Base 2.4.1
+ raa_opendb at Base 2.4.1
+ raa_opendb_pw at Base 2.4.1
+ raa_prep_acnuc_query at Base 2.4.1
+ raa_prep_coordinates at Base 2.4.1
+ raa_proc_query at Base 2.4.1
+ raa_read_annots at Base 2.4.1
+ raa_read_first_rec at Base 2.4.1
+ raa_readacc at Base 2.4.1
+ raa_readext at Base 2.4.1
+ raa_readkey at Base 2.4.1
+ raa_readlng at Base 2.4.1
+ raa_readloc at Base 2.4.1
+ raa_readshrt at Base 2.4.1
+ raa_readsmj at Base 2.4.1
+ raa_readspec at Base 2.4.1
+ raa_readsub at Base 2.4.1
+ raa_readsub_pannots at Base 2.4.1
+ raa_releaselist at Base 2.4.1
+ raa_residuecount at Base 2.4.1
+ raa_savelist at Base 2.4.1
+ raa_seq_to_annots at Base 2.4.1
+ raa_seqrank_attributes at Base 2.4.1
+ raa_setlistname at Base 2.4.1
+ raa_setliststate at Base 2.4.1
+ raa_short_descr at Base 2.4.1
+ raa_translate_cds at Base 2.4.1
+ raa_translate_init_codon at Base 2.4.1
+ raa_zerolist at Base 2.4.1
+ read_sock at Base 2.4.1
+ read_sock_timeout at Base 2.4.1
+ scan_raa_long at Base 2.4.1
+ sock_flush at Base 2.4.1
+ sock_fputs at Base 2.4.1
+ sock_printf at Base 2.4.1
+ strcmptrail at Base 2.4.1
+ totcodes at Base 2.4.1
+ trim_key at Base 2.4.1
+ unprotect_quotes at Base 2.4.1
+ val at Base 2.4.1
+ z_getc at Base 2.4.1
+ z_gets at Base 2.4.1
+ z_read_sock at Base 2.4.1
diff -Nru libbpp-raa-2.4.1/debian/rules libbpp-raa-2.4.1/debian/rules
--- libbpp-raa-2.4.1/debian/rules 2022-11-26 07:06:31.000000000 +0000
+++ libbpp-raa-2.4.1/debian/rules 2024-02-29 09:34:55.000000000 +0000
@@ -10,6 +10,7 @@
override_dh_install:
dh_install
d-shlibmove --commit \
+ --t64 \
--multiarch \
--devunversioned \
--exclude-la \
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