[Debian-med-packaging] Bug#1063189: staden-io-lib: NMU diff for 64-bit time_t transition
Benjamin Drung
bdrung at debian.org
Fri Mar 1 12:46:58 GMT 2024
Source: staden-io-lib
Dear maintainer,
Please find attached a final version of this patch for the time_t
transition. This patch is being uploaded to unstable.
Note that this adds a versioned build-dependency on dpkg-dev, to guard
against accidental backports with a wrong ABI.
Thanks!
-- System Information:
Debian Release: trixie/sid
APT prefers unstable
APT policy: (500, 'unstable'), (1, 'experimental')
Architecture: amd64 (x86_64)
Kernel: Linux 6.5.0-21-generic (SMP w/16 CPU threads; PREEMPT)
Kernel taint flags: TAINT_PROPRIETARY_MODULE, TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE
Locale: LANG=C, LC_CTYPE=C.UTF-8 (charmap=UTF-8), LANGUAGE not set
Shell: /bin/sh linked to /usr/bin/dash
Init: unable to detect
-------------- next part --------------
diff -Nru staden-io-lib-1.15.0/debian/changelog staden-io-lib-1.15.0/debian/changelog
--- staden-io-lib-1.15.0/debian/changelog 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/changelog 2024-03-01 12:46:06.000000000 +0000
@@ -1,3 +1,10 @@
+staden-io-lib (1.15.0-1.1) unstable; urgency=medium
+
+ * Non-maintainer upload.
+ * Rename libraries for 64-bit time_t transition. Closes: #1063189
+
+ -- Benjamin Drung <bdrung at debian.org> Fri, 01 Mar 2024 12:46:06 +0000
+
staden-io-lib (1.15.0-1) unstable; urgency=medium
* Team upload.
diff -Nru staden-io-lib-1.15.0/debian/control staden-io-lib-1.15.0/debian/control
--- staden-io-lib-1.15.0/debian/control 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/control 2024-03-01 12:46:06.000000000 +0000
@@ -6,11 +6,11 @@
Michael R. Crusoe <crusoe at debian.org>
Section: science
Priority: optional
-Build-Depends: debhelper-compat (= 13),
+Build-Depends: dpkg-dev (>= 1.22.5), debhelper-compat (= 13),
zlib1g-dev,
libcurl4-gnutls-dev | libcurl4-nss-dev,
libhtscodecs-dev,
- d-shlibs,
+ d-shlibs (>= 0.106),
libbz2-dev,
liblzma-dev
Standards-Version: 4.6.2
@@ -38,7 +38,7 @@
Package: libstaden-read-dev
Architecture: any
Section: libdevel
-Depends: libstaden-read14 (= ${binary:Version}),
+Depends: libstaden-read14t64 (= ${binary:Version}),
${misc:Depends},
${devlibs:Depends}
Description: development files for libstaden-read
@@ -50,7 +50,10 @@
interface. It has been compiled and tested on a variety of unix systems,
MacOS?X and MS Windows.
-Package: libstaden-read14
+Package: libstaden-read14t64
+Provides: ${t64:Provides}
+Replaces: libstaden-read14
+Conflicts: libstaden-read14 (<< ${source:Version})
Architecture: any
Multi-Arch: same
Section: libs
diff -Nru staden-io-lib-1.15.0/debian/libstaden-read14.symbols staden-io-lib-1.15.0/debian/libstaden-read14.symbols
--- staden-io-lib-1.15.0/debian/libstaden-read14.symbols 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/libstaden-read14.symbols 1970-01-01 00:00:00.000000000 +0000
@@ -1,790 +0,0 @@
-libstaden-read.so.14 libstaden-read14 #MINVER#
-* Build-Depends-Package: libstaden-read-dev
- ArrayCreate at Base 1.14.12
- ArrayDestroy at Base 1.14.12
- ArrayError at Base 1.14.12
- ArrayErrorString at Base 1.14.12
- ArrayExtend at Base 1.14.12
- ArrayRef at Base 1.14.12
- Crc32Lookup at Base 1.14.12
- HashFileCreate at Base 1.14.12
- HashFileDestroy at Base 1.14.12
- HashFileExtract at Base 1.14.12
- HashFileFopen at Base 1.14.12
- HashFileLoad at Base 1.14.12
- HashFileOpen at Base 1.14.12
- HashFileQuery at Base 1.14.12
- HashFileSave at Base 1.14.12
- HashHsieh at Base 1.14.12
- HashJenkins3 at Base 1.14.12
- HashJenkins at Base 1.14.12
- HashTableAdd at Base 1.14.12
- HashTableAddInt64 at Base 1.14.13
- HashTableCreate at Base 1.14.12
- HashTableDel at Base 1.14.12
- HashTableDestroy at Base 1.14.12
- HashTableDump at Base 1.14.12
- HashTableIterCreate at Base 1.14.12
- HashTableIterDestroy at Base 1.14.12
- HashTableIterNext at Base 1.14.12
- HashTableIterReset at Base 1.14.12
- HashTableNext at Base 1.14.12
- HashTableNextInt64 at Base 1.14.13
- HashTableNextInt at Base 1.14.12
- HashTableRemove at Base 1.14.12
- HashTableRemoveInt64 at Base 1.14.13
- HashTableResize at Base 1.14.12
- HashTableSearch at Base 1.14.12
- HashTableSearchInt64 at Base 1.14.13
- HashTableStats at Base 1.14.12
- HashTcl at Base 1.14.12
- MD5_Final at Base 1.14.12
- MD5_Init at Base 1.14.12
- MD5_Update at Base 1.14.12
- abi_reset_data_counts at Base 1.14.12
- abi_set_data_counts at Base 1.14.12
- add_read_names at Base 1.14.12
- append_int64 at Base 1.14.12
- append_int at Base 1.14.12
- append_uint at Base 1.14.12
- bam_add_raw at Base 1.14.12
- bam_aux_A at Base 1.14.12
- bam_aux_Z at Base 1.14.12
- bam_aux_add at Base 1.14.12
- bam_aux_add_data at Base 1.14.12
- bam_aux_add_from_sam at Base 1.14.12
- bam_aux_add_vec at Base 1.14.12
- bam_aux_d at Base 1.14.12
- bam_aux_f at Base 1.14.12
- bam_aux_find at Base 1.14.12
- bam_aux_i at Base 1.14.12
- bam_aux_iter at Base 1.14.12
- bam_aux_iter_full at Base 1.14.12
- bam_aux_size_vec at Base 1.14.12
- bam_aux_skip at Base 1.14.13
- bam_close at Base 1.14.12
- bam_construct_seq at Base 1.14.12
- bam_copy at Base 1.14.12
- bam_dup at Base 1.14.12
- bam_get_seq at Base 1.14.12
- bam_next_seq at Base 1.14.12
- bam_open at Base 1.14.12
- bam_open_block at Base 1.14.12
- bam_put_seq at Base 1.14.12
- bam_set_option at Base 1.14.12
- bam_set_voption at Base 1.14.12
- bam_write_header at Base 1.14.12
- be_read_int_1 at Base 1.14.12
- be_read_int_2 at Base 1.14.12
- be_read_int_4 at Base 1.14.12
- be_read_int_8 at Base 1.14.12
- be_write_int_1 at Base 1.14.12
- be_write_int_2 at Base 1.14.12
- be_write_int_4 at Base 1.14.12
- be_write_int_8 at Base 1.14.12
- bgzf_decode_thread at Base 1.14.12
- bgzf_encode_thread at Base 1.14.12
- bit_reverse at Base 1.14.12
- block_create at Base 1.14.12
- block_destroy at Base 1.14.12
- block_resize at Base 1.14.12
- bzi_close at Base 1.14.12
- bzi_open at Base 1.14.12
- bzi_read at Base 1.14.12
- bzi_seek at Base 1.14.12
- c2fstr at Base 1.14.12
- calc_bit_lengths at Base 1.14.12
- close_fofn at Base 1.14.12
- codes2codeset at Base 1.14.12
- compress_chunk at Base 1.14.12
- compress_file at Base 1.14.12
- compress_int2str at Base 1.14.12
- compress_str2int at Base 1.14.12
- compress_ztr at Base 1.14.12
- compressed_file_exists at Base 1.14.12
- conf2str at Base 1.14.12
- construct_trace_name at Base 1.14.12
- cram_allocate_encoder at Base 1.14.12
- cram_beta_decode_char at Base 1.14.12
- cram_beta_decode_free at Base 1.14.12
- cram_beta_decode_init at Base 1.14.12
- cram_beta_decode_int at Base 1.14.12
- cram_beta_decode_long at Base 1.14.12
- cram_beta_encode_char at Base 1.14.12
- cram_beta_encode_free at Base 1.14.12
- cram_beta_encode_init at Base 1.14.12
- cram_beta_encode_int at Base 1.14.12
- cram_beta_encode_long at Base 1.14.12
- cram_beta_encode_store at Base 1.14.12
- cram_block_method2str at Base 1.14.12
- cram_byte_array_len_decode at Base 1.14.12
- cram_byte_array_len_decode_free at Base 1.14.12
- cram_byte_array_len_decode_init at Base 1.14.12
- cram_byte_array_len_encode at Base 1.14.12
- cram_byte_array_len_encode_free at Base 1.14.12
- cram_byte_array_len_encode_init at Base 1.14.12
- cram_byte_array_len_encode_store at Base 1.14.12
- cram_byte_array_stop_decode_block at Base 1.14.12
- cram_byte_array_stop_decode_free at Base 1.14.12
- cram_byte_array_stop_decode_init at Base 1.14.12
- cram_byte_array_stop_encode at Base 1.14.12
- cram_byte_array_stop_encode_free at Base 1.14.12
- cram_byte_array_stop_encode_init at Base 1.14.12
- cram_byte_array_stop_encode_store at Base 1.14.12
- cram_close at Base 1.14.12
- cram_codec_decoder2encoder at Base 1.14.12
- cram_codec_to_id at Base 1.14.12
- cram_compress_block at Base 1.14.12
- cram_const_decode_byte at Base 1.14.13
- cram_const_decode_free at Base 1.14.13
- cram_const_decode_init at Base 1.14.13
- cram_const_decode_int at Base 1.14.13
- cram_const_decode_long at Base 1.14.13
- cram_const_decode_size at Base 1.14.13
- cram_const_encode at Base 1.14.13
- cram_const_encode_init at Base 1.14.13
- cram_const_encode_store at Base 1.14.13
- cram_content_type2str at Base 1.14.12
- cram_deallocate_encoder at Base 1.14.12
- cram_decode_TD at Base 1.14.12
- cram_decode_compression_header at Base 1.14.12
- cram_decode_estimate_sizes at Base 1.14.12
- cram_decode_slice at Base 1.14.12
- cram_decode_slice_header at Base 1.14.12
- cram_decode_slice_mt at Base 1.14.12
- cram_decode_slice_thread at Base 1.14.12
- cram_decoder_init at Base 1.14.12
- cram_default_version at Base 1.14.12
- cram_dependent_data_series at Base 1.14.12
- cram_encode_compression_header at Base 1.14.12
- cram_encode_container at Base 1.14.12
- cram_encode_slice_header at Base 1.14.12
- cram_encoder_get_fd at Base 1.14.13
- cram_encoder_init at Base 1.14.12
- cram_encoding2str at Base 1.14.12
- cram_enque_compression_block at Base 1.14.12
- cram_eof at Base 1.14.12
- cram_external_decode_char at Base 1.14.12
- cram_external_decode_free at Base 1.14.12
- cram_external_decode_init at Base 1.14.12
- cram_external_decode_int at Base 1.14.12
- cram_external_decode_long at Base 1.14.12
- cram_external_decode_size at Base 1.14.12
- cram_external_encode_char at Base 1.14.12
- cram_external_encode_free at Base 1.14.12
- cram_external_encode_init at Base 1.14.12
- cram_external_encode_int at Base 1.14.12
- cram_external_encode_long at Base 1.14.12
- cram_external_encode_sint at Base 1.14.12
- cram_external_encode_slong at Base 1.14.12
- cram_external_encode_store at Base 1.14.12
- cram_external_get_block at Base 1.14.12
- cram_flush at Base 1.14.12
- cram_flush_container at Base 1.14.12
- cram_flush_container_mt at Base 1.14.12
- cram_flush_thread at Base 1.14.12
- cram_free_block at Base 1.14.12
- cram_free_compression_header at Base 1.14.12
- cram_free_container at Base 1.14.12
- cram_free_file_def at Base 1.14.12
- cram_free_slice at Base 1.14.12
- cram_free_slice_header at Base 1.14.12
- cram_gamma_decode at Base 1.14.12
- cram_gamma_decode_free at Base 1.14.12
- cram_gamma_decode_init at Base 1.14.12
- cram_get_bam_seq at Base 1.14.12
- cram_get_ref at Base 1.14.12
- cram_get_seq at Base 1.14.12
- cram_huffman_decode_char0 at Base 1.14.12
- cram_huffman_decode_char at Base 1.14.12
- cram_huffman_decode_free at Base 1.14.12
- cram_huffman_decode_init at Base 1.14.12
- cram_huffman_decode_int0 at Base 1.14.12
- cram_huffman_decode_int at Base 1.14.12
- cram_huffman_decode_long0 at Base 1.14.12
- cram_huffman_decode_long at Base 1.14.12
- cram_huffman_decode_null at Base 1.14.12
- cram_huffman_encode_char0 at Base 1.14.12
- cram_huffman_encode_char at Base 1.14.12
- cram_huffman_encode_free at Base 1.14.12
- cram_huffman_encode_init at Base 1.14.12
- cram_huffman_encode_int0 at Base 1.14.12
- cram_huffman_encode_int at Base 1.14.12
- cram_huffman_encode_long0 at Base 1.14.12
- cram_huffman_encode_long at Base 1.14.12
- cram_huffman_encode_store at Base 1.14.12
- cram_index_build at Base 1.14.12
- cram_index_free at Base 1.14.12
- cram_index_load at Base 1.14.12
- cram_index_load_via_callbacks at Base 1.14.12
- cram_index_query at Base 1.14.12
- cram_init_varint at Base 1.14.12
- cram_io_allocate_output_buffer at Base 1.14.12
- cram_io_close at Base 1.14.12
- cram_io_deallocate_output_buffer at Base 1.14.12
- cram_io_flush_output_buffer at Base 1.14.12
- cram_io_input_buffer_fgets at Base 1.14.12
- cram_io_input_buffer_read at Base 1.14.12
- cram_io_input_buffer_seek at Base 1.14.12
- cram_io_input_buffer_underflow at Base 1.14.12
- cram_io_open at Base 1.14.12
- cram_io_open_by_callbacks at Base 1.14.12
- cram_io_openw_by_callbacks at Base 1.14.12
- cram_io_output_buffer_putc at Base 1.14.12
- cram_io_output_buffer_write at Base 1.14.12
- cram_load_reference at Base 1.14.12
- cram_mem_write_callback at Base 1.14.12
- cram_new_block at Base 1.14.12
- cram_new_compression_header at Base 1.14.12
- cram_new_container at Base 1.14.12
- cram_new_metrics at Base 1.14.12
- cram_new_slice at Base 1.14.12
- cram_nop_decode_reset at Base 1.14.12
- cram_open at Base 1.14.12
- cram_open_by_callbacks at Base 1.14.12
- cram_openw_by_callbacks at Base 1.14.12
- cram_process_work_package at Base 1.14.12
- cram_put_bam_seq at Base 1.14.12
- cram_read_SAM_hdr at Base 1.14.12
- cram_read_block at Base 1.14.12
- cram_read_container at Base 1.14.12
- cram_read_file_def at Base 1.14.12
- cram_read_slice at Base 1.14.12
- cram_ref_decr at Base 1.14.12
- cram_ref_incr at Base 1.14.12
- cram_ref_load at Base 1.14.12
- cram_seek at Base 1.14.12
- cram_seek_to_refpos at Base 1.14.12
- cram_set_option at Base 1.14.12
- cram_set_voption at Base 1.14.12
- cram_stats_add at Base 1.14.12
- cram_stats_create at Base 1.14.12
- cram_stats_del at Base 1.14.12
- cram_stats_dump at Base 1.14.12
- cram_stats_encoding at Base 1.14.12
- cram_stats_free at Base 1.14.12
- cram_stats_qual at Base 1.14.12
- cram_subexp_decode at Base 1.14.12
- cram_subexp_decode_free at Base 1.14.12
- cram_subexp_decode_init at Base 1.14.12
- cram_uncompress_block at Base 1.14.12
- cram_update_curr_slice at Base 1.14.12
- cram_varint_decode_free at Base 1.14.13
- cram_varint_decode_init at Base 1.14.13
- cram_varint_decode_int at Base 1.14.13
- cram_varint_decode_long at Base 1.14.13
- cram_varint_decode_sint at Base 1.14.13
- cram_varint_decode_size at Base 1.14.13
- cram_varint_decode_slong at Base 1.14.13
- cram_varint_encode_free at Base 1.14.13
- cram_varint_encode_init at Base 1.14.13
- cram_varint_encode_int at Base 1.14.13
- cram_varint_encode_long at Base 1.14.13
- cram_varint_encode_sint at Base 1.14.13
- cram_varint_encode_slong at Base 1.14.13
- cram_varint_encode_store at Base 1.14.13
- cram_varint_get_block at Base 1.14.13
- cram_write_SAM_hdr at Base 1.14.12
- cram_write_SAM_hdr at Base 1.14.12
- cram_write_block at Base 1.14.12
- cram_write_container at Base 1.14.12
- cram_write_eof_block at Base 1.14.12
- cram_write_file_def at Base 1.14.12
- cram_xdelta_decode_block at Base 1.14.12
- cram_xdelta_decode_char at Base 1.14.12
- cram_xdelta_decode_free at Base 1.14.12
- cram_xdelta_decode_init at Base 1.14.12
- cram_xdelta_decode_int at Base 1.14.12
- cram_xdelta_decode_long at Base 1.14.12
- cram_xdelta_decode_size at Base 1.14.12
- cram_xdelta_encode_char at Base 1.14.12
- cram_xdelta_encode_flush at Base 1.14.12
- cram_xdelta_encode_free at Base 1.14.12
- cram_xdelta_encode_init at Base 1.14.12
- cram_xdelta_encode_int at Base 1.14.12
- cram_xdelta_encode_long at Base 1.14.12
- cram_xdelta_encode_store at Base 1.14.12
- cram_xdelta_get_block at Base 1.14.12
- cram_xpack_decode_char at Base 1.14.12
- cram_xpack_decode_free at Base 1.14.12
- cram_xpack_decode_init at Base 1.14.12
- cram_xpack_decode_int at Base 1.14.12
- cram_xpack_decode_long at Base 1.14.12
- cram_xpack_decode_size at Base 1.14.12
- cram_xpack_encode_char at Base 1.14.12
- cram_xpack_encode_flush at Base 1.14.12
- cram_xpack_encode_free at Base 1.14.12
- cram_xpack_encode_init at Base 1.14.12
- cram_xpack_encode_int at Base 1.14.12
- cram_xpack_encode_long at Base 1.14.12
- cram_xpack_encode_store at Base 1.14.12
- cram_xpack_get_block at Base 1.14.12
- cram_xrle_decode_char at Base 1.14.12
- cram_xrle_decode_free at Base 1.14.12
- cram_xrle_decode_init at Base 1.14.12
- cram_xrle_decode_int at Base 1.14.12
- cram_xrle_decode_long at Base 1.14.12
- cram_xrle_decode_size at Base 1.14.12
- cram_xrle_encode_char at Base 1.14.12
- cram_xrle_encode_flush at Base 1.14.12
- cram_xrle_encode_free at Base 1.14.12
- cram_xrle_encode_init at Base 1.14.12
- cram_xrle_encode_int at Base 1.14.12
- cram_xrle_encode_long at Base 1.14.12
- cram_xrle_encode_store at Base 1.14.12
- cram_xrle_get_block at Base 1.14.12
- crc32_16bytes at Base 1.14.12
- decode_sff_common_header at Base 1.14.12
- decode_sff_read_header at Base 1.14.12
- decorrelate1 at Base 1.14.12
- decorrelate1dyn at Base 1.14.12
- decorrelate2 at Base 1.14.12
- decorrelate2dyn at Base 1.14.12
- decorrelate4 at Base 1.14.12
- delete_ztr at Base 1.14.12
- determine_trace_type at Base 1.14.12
- dstring_append at Base 1.14.12
- dstring_append_char at Base 1.14.12
- dstring_append_hex_encoded at Base 1.14.12
- dstring_append_int at Base 1.14.12
- dstring_appendf at Base 1.14.12
- dstring_create at Base 1.14.12
- dstring_create_with at Base 1.14.12
- dstring_delete at Base 1.14.12
- dstring_destroy at Base 1.14.12
- dstring_dinsert at Base 1.14.12
- dstring_dreplace at Base 1.14.12
- dstring_empty at Base 1.14.12
- dstring_escape_html at Base 1.14.12
- dstring_find at Base 1.14.12
- dstring_find_replace at Base 1.14.12
- dstring_find_replace_all at Base 1.14.12
- dstring_htmlise_links at Base 1.14.12
- dstring_insert at Base 1.14.12
- dstring_insertf at Base 1.14.12
- dstring_length at Base 1.14.12
- dstring_nappend at Base 1.14.12
- dstring_ninsert at Base 1.14.12
- dstring_nprepend at Base 1.14.12
- dstring_perror at Base 1.14.12
- dstring_prepend at Base 1.14.12
- dstring_prependf at Base 1.14.12
- dstring_refresh_length at Base 1.14.12
- dstring_replace at Base 1.14.12
- dstring_resize at Base 1.14.12
- dstring_str at Base 1.14.12
- dstring_to_html at Base 1.14.12
- dstring_vinsertf at Base 1.14.12
- dump_labels at Base 1.14.12
- eflt_feature_ids at Base 1.14.12
- encode_sff_common_header at Base 1.14.12
- encode_sff_read_header at Base 1.14.12
- errout at Base 1.14.12
- exp2read at Base 1.14.12
- exp_close at Base 1.14.12
- exp_create_info at Base 1.14.12
- exp_create_range at Base 1.14.12
- exp_destroy_info at Base 1.14.12
- exp_extract_range at Base 1.14.12
- exp_fread_info at Base 1.14.12
- exp_get_feature_index at Base 1.14.12
- exp_get_int at Base 1.14.12
- exp_get_rng at Base 1.14.12
- exp_get_str at Base 1.14.12
- exp_mfread_info at Base 1.14.12
- exp_print_file at Base 1.14.12
- exp_print_line at Base 1.14.12
- exp_print_mfile at Base 1.14.12
- exp_print_mline at Base 1.14.12
- exp_print_seq at Base 1.14.12
- exp_put_int at Base 1.14.12
- exp_put_rng at Base 1.14.12
- exp_put_str at Base 1.14.12
- exp_read_info at Base 1.14.12
- exp_set_entry at Base 1.14.12
- expand_8to16 at Base 1.14.12
- expand_8to32 at Base 1.14.12
- expand_cache_path at Base 1.14.12
- expcr_ at Base 1.14.12
- expected_template_count at Base 1.14.12
- exper_ at Base 1.14.12
- expkil_ at Base 1.14.12
- expopn_ at Base 1.14.12
- expri_ at Base 1.14.12
- exprr_ at Base 1.14.12
- exprs_ at Base 1.14.12
- exprsa_ at Base 1.14.12
- expwi_ at Base 1.14.12
- expwr_ at Base 1.14.12
- expws_ at Base 1.14.12
- expwsa_ at Base 1.14.12
- f2cstr at Base 1.14.12
- fcompress_file at Base 1.14.12
- fdetermine_trace_type at Base 1.14.12
- file_exists at Base 1.14.12
- file_size at Base 1.14.12
- find_file_url at Base 1.14.12
- flen at Base 1.14.12
- follow1 at Base 1.14.12
- fopen_compressed at Base 1.14.12
- fread_abi at Base 1.14.12
- fread_alf at Base 1.14.12
- fread_pln at Base 1.14.12
- fread_reading at Base 1.14.12
- fread_scf at Base 1.14.12
- fread_ztr at Base 1.14.12
- free_sff_common_header at Base 1.14.12
- free_sff_read_data at Base 1.14.12
- free_sff_read_header at Base 1.14.12
- freopen_compressed at Base 1.14.12
- fstrlen at Base 1.14.12
- fwrite_abi at Base 1.14.12
- fwrite_alf at Base 1.14.12
- fwrite_pln at Base 1.14.12
- fwrite_reading at Base 1.14.12
- fwrite_scf at Base 1.14.12
- fwrite_ztr at Base 1.14.12
- generate_code_set at Base 1.14.12
- generate_consensus at Base 1.14.12
- getABIIndexEntryLW at Base 1.14.12
- getABIIndexEntrySW at Base 1.14.12
- getABIIndexOffset at Base 1.14.12
- getABIString at Base 1.14.12
- getABIint1 at Base 1.14.12
- getABIint2 at Base 1.14.12
- getABIint4 at Base 1.14.12
- get_compression_method at Base 1.14.12
- get_read_conf at Base 1.14.12
- gzi_index_add_block at Base 1.14.12
- gzi_index_dump at Base 1.14.12
- gzi_index_free at Base 1.14.12
- gzi_index_init at Base 1.14.12
- gzi_index_load at Base 1.14.12
- gzi_load at Base 1.14.12
- hash64 at Base 1.14.12
- hash at Base 1.14.12
- huffman_codes_destroy at Base 1.14.12
- huffman_codeset_destroy at Base 1.14.12
- huffman_decode at Base 1.14.12
- huffman_multi_decode at Base 1.14.12
- huffman_multi_encode at Base 1.14.12
- ichebcomp at Base 1.14.12
- ichebuncomp at Base 1.14.12
- illumina_bin at Base 1.14.12
- illumina_bin_33 at Base 1.14.12
- init_decode_tables at Base 1.14.12
- int32_decode at Base 1.14.12
- int32_encode at Base 1.14.12
- int32_get_blk at Base 1.14.12
- int32_put at Base 1.14.12
- int_to_float at Base 1.14.12
- iolib_crc32 at Base 1.14.12
- iolib_get_exp_path at Base 1.14.12
- iolib_get_trace_path at Base 1.14.12
- iolib_set_exp_path at Base 1.14.12
- iolib_set_trace_path at Base 1.14.12
- is_directory at Base 1.14.12
- is_file at Base 1.14.12
- is_scf at Base 1.14.12
- itf8_bytes at Base 1.14.12
- itf8_decode_crc at Base 1.14.12
- itf8_put_blk at Base 1.14.12
- itf8_size at Base 1.14.12
- le_read_int_1 at Base 1.14.12
- le_read_int_2 at Base 1.14.12
- le_read_int_4 at Base 1.14.12
- le_read_int_8 at Base 1.14.12
- le_write_int_1 at Base 1.14.12
- le_write_int_2 at Base 1.14.12
- le_write_int_4 at Base 1.14.12
- le_write_int_8 at Base 1.14.12
- load_ref_portion at Base 1.14.12
- log2_data at Base 1.14.12
- lossy_read_names at Base 1.14.12
- ltf8_bytes at Base 1.14.12
- ltf8_decode at Base 1.14.12
- ltf8_decode_crc at Base 1.14.12
- ltf8_put_blk at Base 1.14.12
- memgunzip at Base 1.14.12
- memgzip at Base 1.14.12
- mfascii at Base 1.14.12
- mfclose at Base 1.14.12
- mfcreate at Base 1.14.12
- mfcreate_from at Base 1.14.12
- mfdestroy at Base 1.14.12
- mfdetach at Base 1.14.12
- mfeof at Base 1.14.12
- mfflush at Base 1.14.12
- mfgetc at Base 1.14.12
- mfgets at Base 1.14.12
- mfmmap at Base 1.14.12
- mfopen at Base 1.14.12
- mfprintf at Base 1.14.12
- mfread at Base 1.14.12
- mfread_abi at Base 1.14.12
- mfread_alf at Base 1.14.12
- mfread_pln at Base 1.14.12
- mfread_reading at Base 1.14.12
- mfread_scf at Base 1.14.12
- mfread_sff at Base 1.14.12
- mfread_ztr at Base 1.14.12
- mfrecreate at Base 1.14.12
- mfreopen at Base 1.14.12
- mfseek at Base 1.14.12
- mfsteal at Base 1.14.12
- mftell at Base 1.14.12
- mftruncate at Base 1.14.12
- mfwrite at Base 1.14.12
- mfwrite_abi at Base 1.14.12
- mfwrite_alf at Base 1.14.12
- mfwrite_pln at Base 1.14.12
- mfwrite_reading at Base 1.14.12
- mfwrite_scf at Base 1.14.12
- mfwrite_ztr at Base 1.14.12
- mkdir_prefix at Base 1.14.12
- mrewind at Base 1.14.12
- mstderr at Base 1.14.12
- mstdin at Base 1.14.12
- mstdout at Base 1.14.12
- mungetc at Base 1.14.12
- myfind at Base 1.14.12
- mystrtok at Base 1.14.12
- new_ztr at Base 1.14.12
- next_symbol at Base 1.14.12
- open_exp_file at Base 1.14.12
- open_exp_mfile at Base 1.14.12
- open_fofn at Base 1.14.12
- open_path_file at Base 1.14.12
- open_path_mfile at Base 1.14.12
- open_trace_file at Base 1.14.12
- open_trace_mfile at Base 1.14.12
- opos2str at Base 1.14.12
- pack_trace_suffix at Base 1.14.12
- paranoid_fclose at Base 1.14.12
- partial_decode_ztr at Base 1.14.12
- pool_alloc at Base 1.14.12
- pool_create at Base 1.14.12
- pool_destroy at Base 1.14.12
- pool_free at Base 1.14.12
- qshift at Base 1.14.12
- read2exp at Base 1.14.12
- read2scf at Base 1.14.12
- read2ztr at Base 1.14.12
- read_abi at Base 1.14.12
- read_alf at Base 1.14.12
- read_allocate at Base 1.14.12
- read_deallocate at Base 1.14.12
- read_dup at Base 1.14.12
- read_experiment_redirect at Base 1.14.12
- read_fofn at Base 1.14.12
- read_pln at Base 1.14.12
- read_reading at Base 1.14.12
- read_scf at Base 1.14.12
- read_scf_base at Base 1.14.12
- read_scf_bases3 at Base 1.14.12
- read_scf_bases at Base 1.14.12
- read_scf_comment at Base 1.14.12
- read_scf_header at Base 1.14.12
- read_scf_sample1 at Base 1.14.12
- read_scf_sample2 at Base 1.14.12
- read_scf_samples1 at Base 1.14.12
- read_scf_samples2 at Base 1.14.12
- read_scf_samples31 at Base 1.14.12
- read_scf_samples32 at Base 1.14.12
- read_sections at Base 1.14.12
- read_sff_common_header at Base 1.14.12
- read_sff_read_data at Base 1.14.12
- read_sff_read_header at Base 1.14.12
- read_update_base_positions at Base 1.14.12
- read_update_confidence_values at Base 1.14.12
- recorrelate1 at Base 1.14.12
- recorrelate2 at Base 1.14.12
- recorrelate4 at Base 1.14.12
- refs2id at Base 1.14.12
- refs_free at Base 1.14.12
- refs_load_fai at Base 1.14.12
- remove_extension at Base 1.14.12
- remove_file at Base 1.14.12
- reset_metrics at Base 1.14.12
- restore_codes at Base 1.14.12
- restore_codes_single at Base 1.14.12
- rle at Base 1.14.12
- safe_itf8_put at Base 1.14.12
- safe_ltf8_put at Base 1.14.12
- sam_hdr_PG_ID at Base 1.14.12
- sam_hdr_add at Base 1.14.12
- sam_hdr_add_PG at Base 1.14.12
- sam_hdr_add_lines at Base 1.14.12
- sam_hdr_decr_ref at Base 1.14.12
- sam_hdr_dump at Base 1.14.12
- sam_hdr_dup at Base 1.14.12
- sam_hdr_find at Base 1.14.12
- sam_hdr_find_key at Base 1.14.12
- sam_hdr_find_line at Base 1.14.12
- sam_hdr_find_rg at Base 1.14.12
- sam_hdr_free at Base 1.14.12
- sam_hdr_incr_ref at Base 1.14.12
- sam_hdr_length at Base 1.14.12
- sam_hdr_link_pg at Base 1.14.12
- sam_hdr_name2ref at Base 1.14.12
- sam_hdr_new at Base 1.14.12
- sam_hdr_parse at Base 1.14.12
- sam_hdr_rebuild at Base 1.14.12
- sam_hdr_sort_order at Base 1.14.12
- sam_hdr_str at Base 1.14.12
- sam_hdr_update at Base 1.14.12
- sam_hdr_vadd at Base 1.14.12
- scf2read at Base 1.14.12
- scf_allocate at Base 1.14.12
- scf_deallocate at Base 1.14.12
- scf_delta_samples1 at Base 1.14.12
- scf_delta_samples2 at Base 1.14.12
- scf_version_float2str at Base 1.14.12
- scf_version_str2float at Base 1.14.12
- scram_close at Base 1.14.12
- scram_get_header at Base 1.14.12
- scram_get_refs at Base 1.14.12
- scram_get_seq at Base 1.14.12
- scram_init at Base 1.14.12
- scram_input_bam_block at Base 1.14.12
- scram_line at Base 1.14.12
- scram_next_seq at Base 1.14.12
- scram_open at Base 1.14.12
- scram_open_cram_via_callbacks at Base 1.14.12
- scram_put_seq at Base 1.14.12
- scram_set_header at Base 1.14.12
- scram_set_option at Base 1.14.12
- scram_set_refs at Base 1.14.12
- scram_write_header at Base 1.14.12
- set_compression_method at Base 1.14.12
- set_scf_version at Base 1.14.12
- shrink_16to8 at Base 1.14.12
- shrink_32to8 at Base 1.14.12
- srf_construct_cont_hdr at Base 1.14.12
- srf_construct_trace_body at Base 1.14.12
- srf_construct_trace_hdr at Base 1.14.12
- srf_create at Base 1.14.12
- srf_destroy at Base 1.14.12
- srf_destroy_cont_hdr at Base 1.14.12
- srf_destroy_trace_body at Base 1.14.12
- srf_destroy_trace_hdr at Base 1.14.12
- srf_find_trace at Base 1.14.12
- srf_index_add_cont_hdr at Base 1.14.12
- srf_index_add_trace_body at Base 1.14.12
- srf_index_add_trace_hdr at Base 1.14.12
- srf_index_create at Base 1.14.12
- srf_index_destroy at Base 1.14.12
- srf_index_stats at Base 1.14.12
- srf_index_write at Base 1.14.12
- srf_next_block_details at Base 1.14.12
- srf_next_block_type at Base 1.14.12
- srf_next_trace at Base 1.14.12
- srf_next_ztr at Base 1.14.12
- srf_next_ztr_flags at Base 1.14.12
- srf_open at Base 1.14.12
- srf_read_cont_hdr at Base 1.14.12
- srf_read_index_hdr at Base 1.14.12
- srf_read_pstring at Base 1.14.12
- srf_read_trace_body at Base 1.14.12
- srf_read_trace_hdr at Base 1.14.12
- srf_read_uint32 at Base 1.14.12
- srf_read_uint64 at Base 1.14.12
- srf_read_xml at Base 1.14.12
- srf_write_cont_hdr at Base 1.14.12
- srf_write_index_hdr at Base 1.14.12
- srf_write_pstring at Base 1.14.12
- srf_write_pstringb at Base 1.14.12
- srf_write_trace_body at Base 1.14.12
- srf_write_trace_hdr at Base 1.14.12
- srf_write_uint32 at Base 1.14.12
- srf_write_uint64 at Base 1.14.12
- srf_write_xml at Base 1.14.12
- sthuff at Base 1.14.12
- store_bytes at Base 1.14.12
- store_codes at Base 1.14.12
- store_codes_single at Base 1.14.12
- str2conf at Base 1.14.12
- str2opos at Base 1.14.12
- str_tolower at Base 1.14.12
- str_toupper at Base 1.14.12
- string_alloc at Base 1.14.12
- string_dup at Base 1.14.12
- string_ndup at Base 1.14.12
- string_pool_create at Base 1.14.12
- string_pool_destroy at Base 1.14.12
- stringify_argv at Base 1.14.12
- t_pool_delete_result at Base 1.14.12
- t_pool_destroy at Base 1.14.12
- t_pool_dispatch2 at Base 1.14.12
- t_pool_dispatch at Base 1.14.12
- t_pool_flush at Base 1.14.12
- t_pool_init at Base 1.14.12
- t_pool_next_result at Base 1.14.12
- t_pool_next_result_wait at Base 1.14.12
- t_pool_results_queue_empty at Base 1.14.12
- t_pool_results_queue_len at Base 1.14.12
- t_pool_results_queue_sz at Base 1.14.12
- t_results_queue_destroy at Base 1.14.12
- t_results_queue_init at Base 1.14.12
- tokenise_search_path at Base 1.14.12
- trace_type_int2str at Base 1.14.12
- trace_type_str2int at Base 1.14.12
- trace_type_str at Base 1.14.12
- tshift at Base 1.14.12
- uncompress_chunk at Base 1.14.12
- uncompress_ztr at Base 1.14.12
- unfollow1 at Base 1.14.12
- unlog2_data at Base 1.14.12
- unqshift at Base 1.14.12
- unrle at Base 1.14.12
- unsthuff at Base 1.14.12
- untshift at Base 1.14.12
- unxrle2 at Base 1.14.12
- unxrle at Base 1.14.12
- vflen at Base 1.14.12
- write_abi at Base 1.14.12
- write_alf at Base 1.14.12
- write_pln at Base 1.14.12
- write_reading at Base 1.14.12
- write_scf at Base 1.14.12
- write_scf_base at Base 1.14.12
- write_scf_bases3 at Base 1.14.12
- write_scf_bases at Base 1.14.12
- write_scf_comment at Base 1.14.12
- write_scf_header at Base 1.14.12
- write_scf_sample1 at Base 1.14.12
- write_scf_sample2 at Base 1.14.12
- write_scf_samples1 at Base 1.14.12
- write_scf_samples2 at Base 1.14.12
- write_scf_samples31 at Base 1.14.12
- write_scf_samples32 at Base 1.14.12
- xcalloc at Base 1.14.12
- xfree at Base 1.14.12
- xmalloc at Base 1.14.12
- xrealloc at Base 1.14.12
- xrle2 at Base 1.14.12
- xrle at Base 1.14.12
- zfclose at Base 1.14.12
- zfeof at Base 1.14.12
- zfgets at Base 1.14.12
- zfopen at Base 1.14.12
- zfpeek at Base 1.14.12
- zfputs at Base 1.14.12
- zfseeko at Base 1.14.12
- zftello at Base 1.14.12
- zlib_dehuff at Base 1.14.12
- zlib_huff at Base 1.14.12
- zlib_mem_inflate at Base 1.14.12
- ztr2read at Base 1.14.12
- ztr_add_hcode at Base 1.14.12
- ztr_add_text at Base 1.14.12
- ztr_dup at Base 1.14.12
- ztr_find_chunks at Base 1.14.12
- ztr_find_hcode at Base 1.14.12
- ztr_find_hcode_chunk at Base 1.14.12
- ztr_lookup_mdata_value at Base 1.14.12
- ztr_new_chunk at Base 1.14.12
- ztr_process_text at Base 1.14.12
- ztr_read_chunk_hdr at Base 1.14.12
- ztr_read_header at Base 1.14.12
- ztr_store_hcodes at Base 1.14.12
diff -Nru staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides
--- staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides 1970-01-01 00:00:00.000000000 +0000
+++ staden-io-lib-1.15.0/debian/libstaden-read14t64.lintian-overrides 2024-03-01 12:45:33.000000000 +0000
@@ -0,0 +1 @@
+libstaden-read14t64: package-name-doesnt-match-sonames libstaden-read14
diff -Nru staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols
--- staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols 1970-01-01 00:00:00.000000000 +0000
+++ staden-io-lib-1.15.0/debian/libstaden-read14t64.symbols 2024-03-01 12:45:33.000000000 +0000
@@ -0,0 +1,790 @@
+libstaden-read.so.14 libstaden-read14t64 #MINVER#
+* Build-Depends-Package: libstaden-read-dev
+ ArrayCreate at Base 1.14.12
+ ArrayDestroy at Base 1.14.12
+ ArrayError at Base 1.14.12
+ ArrayErrorString at Base 1.14.12
+ ArrayExtend at Base 1.14.12
+ ArrayRef at Base 1.14.12
+ Crc32Lookup at Base 1.14.12
+ HashFileCreate at Base 1.14.12
+ HashFileDestroy at Base 1.14.12
+ HashFileExtract at Base 1.14.12
+ HashFileFopen at Base 1.14.12
+ HashFileLoad at Base 1.14.12
+ HashFileOpen at Base 1.14.12
+ HashFileQuery at Base 1.14.12
+ HashFileSave at Base 1.14.12
+ HashHsieh at Base 1.14.12
+ HashJenkins3 at Base 1.14.12
+ HashJenkins at Base 1.14.12
+ HashTableAdd at Base 1.14.12
+ HashTableAddInt64 at Base 1.14.13
+ HashTableCreate at Base 1.14.12
+ HashTableDel at Base 1.14.12
+ HashTableDestroy at Base 1.14.12
+ HashTableDump at Base 1.14.12
+ HashTableIterCreate at Base 1.14.12
+ HashTableIterDestroy at Base 1.14.12
+ HashTableIterNext at Base 1.14.12
+ HashTableIterReset at Base 1.14.12
+ HashTableNext at Base 1.14.12
+ HashTableNextInt64 at Base 1.14.13
+ HashTableNextInt at Base 1.14.12
+ HashTableRemove at Base 1.14.12
+ HashTableRemoveInt64 at Base 1.14.13
+ HashTableResize at Base 1.14.12
+ HashTableSearch at Base 1.14.12
+ HashTableSearchInt64 at Base 1.14.13
+ HashTableStats at Base 1.14.12
+ HashTcl at Base 1.14.12
+ MD5_Final at Base 1.14.12
+ MD5_Init at Base 1.14.12
+ MD5_Update at Base 1.14.12
+ abi_reset_data_counts at Base 1.14.12
+ abi_set_data_counts at Base 1.14.12
+ add_read_names at Base 1.14.12
+ append_int64 at Base 1.14.12
+ append_int at Base 1.14.12
+ append_uint at Base 1.14.12
+ bam_add_raw at Base 1.14.12
+ bam_aux_A at Base 1.14.12
+ bam_aux_Z at Base 1.14.12
+ bam_aux_add at Base 1.14.12
+ bam_aux_add_data at Base 1.14.12
+ bam_aux_add_from_sam at Base 1.14.12
+ bam_aux_add_vec at Base 1.14.12
+ bam_aux_d at Base 1.14.12
+ bam_aux_f at Base 1.14.12
+ bam_aux_find at Base 1.14.12
+ bam_aux_i at Base 1.14.12
+ bam_aux_iter at Base 1.14.12
+ bam_aux_iter_full at Base 1.14.12
+ bam_aux_size_vec at Base 1.14.12
+ bam_aux_skip at Base 1.14.13
+ bam_close at Base 1.14.12
+ bam_construct_seq at Base 1.14.12
+ bam_copy at Base 1.14.12
+ bam_dup at Base 1.14.12
+ bam_get_seq at Base 1.14.12
+ bam_next_seq at Base 1.14.12
+ bam_open at Base 1.14.12
+ bam_open_block at Base 1.14.12
+ bam_put_seq at Base 1.14.12
+ bam_set_option at Base 1.14.12
+ bam_set_voption at Base 1.14.12
+ bam_write_header at Base 1.14.12
+ be_read_int_1 at Base 1.14.12
+ be_read_int_2 at Base 1.14.12
+ be_read_int_4 at Base 1.14.12
+ be_read_int_8 at Base 1.14.12
+ be_write_int_1 at Base 1.14.12
+ be_write_int_2 at Base 1.14.12
+ be_write_int_4 at Base 1.14.12
+ be_write_int_8 at Base 1.14.12
+ bgzf_decode_thread at Base 1.14.12
+ bgzf_encode_thread at Base 1.14.12
+ bit_reverse at Base 1.14.12
+ block_create at Base 1.14.12
+ block_destroy at Base 1.14.12
+ block_resize at Base 1.14.12
+ bzi_close at Base 1.14.12
+ bzi_open at Base 1.14.12
+ bzi_read at Base 1.14.12
+ bzi_seek at Base 1.14.12
+ c2fstr at Base 1.14.12
+ calc_bit_lengths at Base 1.14.12
+ close_fofn at Base 1.14.12
+ codes2codeset at Base 1.14.12
+ compress_chunk at Base 1.14.12
+ compress_file at Base 1.14.12
+ compress_int2str at Base 1.14.12
+ compress_str2int at Base 1.14.12
+ compress_ztr at Base 1.14.12
+ compressed_file_exists at Base 1.14.12
+ conf2str at Base 1.14.12
+ construct_trace_name at Base 1.14.12
+ cram_allocate_encoder at Base 1.14.12
+ cram_beta_decode_char at Base 1.14.12
+ cram_beta_decode_free at Base 1.14.12
+ cram_beta_decode_init at Base 1.14.12
+ cram_beta_decode_int at Base 1.14.12
+ cram_beta_decode_long at Base 1.14.12
+ cram_beta_encode_char at Base 1.14.12
+ cram_beta_encode_free at Base 1.14.12
+ cram_beta_encode_init at Base 1.14.12
+ cram_beta_encode_int at Base 1.14.12
+ cram_beta_encode_long at Base 1.14.12
+ cram_beta_encode_store at Base 1.14.12
+ cram_block_method2str at Base 1.14.12
+ cram_byte_array_len_decode at Base 1.14.12
+ cram_byte_array_len_decode_free at Base 1.14.12
+ cram_byte_array_len_decode_init at Base 1.14.12
+ cram_byte_array_len_encode at Base 1.14.12
+ cram_byte_array_len_encode_free at Base 1.14.12
+ cram_byte_array_len_encode_init at Base 1.14.12
+ cram_byte_array_len_encode_store at Base 1.14.12
+ cram_byte_array_stop_decode_block at Base 1.14.12
+ cram_byte_array_stop_decode_free at Base 1.14.12
+ cram_byte_array_stop_decode_init at Base 1.14.12
+ cram_byte_array_stop_encode at Base 1.14.12
+ cram_byte_array_stop_encode_free at Base 1.14.12
+ cram_byte_array_stop_encode_init at Base 1.14.12
+ cram_byte_array_stop_encode_store at Base 1.14.12
+ cram_close at Base 1.14.12
+ cram_codec_decoder2encoder at Base 1.14.12
+ cram_codec_to_id at Base 1.14.12
+ cram_compress_block at Base 1.14.12
+ cram_const_decode_byte at Base 1.14.13
+ cram_const_decode_free at Base 1.14.13
+ cram_const_decode_init at Base 1.14.13
+ cram_const_decode_int at Base 1.14.13
+ cram_const_decode_long at Base 1.14.13
+ cram_const_decode_size at Base 1.14.13
+ cram_const_encode at Base 1.14.13
+ cram_const_encode_init at Base 1.14.13
+ cram_const_encode_store at Base 1.14.13
+ cram_content_type2str at Base 1.14.12
+ cram_deallocate_encoder at Base 1.14.12
+ cram_decode_TD at Base 1.14.12
+ cram_decode_compression_header at Base 1.14.12
+ cram_decode_estimate_sizes at Base 1.14.12
+ cram_decode_slice at Base 1.14.12
+ cram_decode_slice_header at Base 1.14.12
+ cram_decode_slice_mt at Base 1.14.12
+ cram_decode_slice_thread at Base 1.14.12
+ cram_decoder_init at Base 1.14.12
+ cram_default_version at Base 1.14.12
+ cram_dependent_data_series at Base 1.14.12
+ cram_encode_compression_header at Base 1.14.12
+ cram_encode_container at Base 1.14.12
+ cram_encode_slice_header at Base 1.14.12
+ cram_encoder_get_fd at Base 1.14.13
+ cram_encoder_init at Base 1.14.12
+ cram_encoding2str at Base 1.14.12
+ cram_enque_compression_block at Base 1.14.12
+ cram_eof at Base 1.14.12
+ cram_external_decode_char at Base 1.14.12
+ cram_external_decode_free at Base 1.14.12
+ cram_external_decode_init at Base 1.14.12
+ cram_external_decode_int at Base 1.14.12
+ cram_external_decode_long at Base 1.14.12
+ cram_external_decode_size at Base 1.14.12
+ cram_external_encode_char at Base 1.14.12
+ cram_external_encode_free at Base 1.14.12
+ cram_external_encode_init at Base 1.14.12
+ cram_external_encode_int at Base 1.14.12
+ cram_external_encode_long at Base 1.14.12
+ cram_external_encode_sint at Base 1.14.12
+ cram_external_encode_slong at Base 1.14.12
+ cram_external_encode_store at Base 1.14.12
+ cram_external_get_block at Base 1.14.12
+ cram_flush at Base 1.14.12
+ cram_flush_container at Base 1.14.12
+ cram_flush_container_mt at Base 1.14.12
+ cram_flush_thread at Base 1.14.12
+ cram_free_block at Base 1.14.12
+ cram_free_compression_header at Base 1.14.12
+ cram_free_container at Base 1.14.12
+ cram_free_file_def at Base 1.14.12
+ cram_free_slice at Base 1.14.12
+ cram_free_slice_header at Base 1.14.12
+ cram_gamma_decode at Base 1.14.12
+ cram_gamma_decode_free at Base 1.14.12
+ cram_gamma_decode_init at Base 1.14.12
+ cram_get_bam_seq at Base 1.14.12
+ cram_get_ref at Base 1.14.12
+ cram_get_seq at Base 1.14.12
+ cram_huffman_decode_char0 at Base 1.14.12
+ cram_huffman_decode_char at Base 1.14.12
+ cram_huffman_decode_free at Base 1.14.12
+ cram_huffman_decode_init at Base 1.14.12
+ cram_huffman_decode_int0 at Base 1.14.12
+ cram_huffman_decode_int at Base 1.14.12
+ cram_huffman_decode_long0 at Base 1.14.12
+ cram_huffman_decode_long at Base 1.14.12
+ cram_huffman_decode_null at Base 1.14.12
+ cram_huffman_encode_char0 at Base 1.14.12
+ cram_huffman_encode_char at Base 1.14.12
+ cram_huffman_encode_free at Base 1.14.12
+ cram_huffman_encode_init at Base 1.14.12
+ cram_huffman_encode_int0 at Base 1.14.12
+ cram_huffman_encode_int at Base 1.14.12
+ cram_huffman_encode_long0 at Base 1.14.12
+ cram_huffman_encode_long at Base 1.14.12
+ cram_huffman_encode_store at Base 1.14.12
+ cram_index_build at Base 1.14.12
+ cram_index_free at Base 1.14.12
+ cram_index_load at Base 1.14.12
+ cram_index_load_via_callbacks at Base 1.14.12
+ cram_index_query at Base 1.14.12
+ cram_init_varint at Base 1.14.12
+ cram_io_allocate_output_buffer at Base 1.14.12
+ cram_io_close at Base 1.14.12
+ cram_io_deallocate_output_buffer at Base 1.14.12
+ cram_io_flush_output_buffer at Base 1.14.12
+ cram_io_input_buffer_fgets at Base 1.14.12
+ cram_io_input_buffer_read at Base 1.14.12
+ cram_io_input_buffer_seek at Base 1.14.12
+ cram_io_input_buffer_underflow at Base 1.14.12
+ cram_io_open at Base 1.14.12
+ cram_io_open_by_callbacks at Base 1.14.12
+ cram_io_openw_by_callbacks at Base 1.14.12
+ cram_io_output_buffer_putc at Base 1.14.12
+ cram_io_output_buffer_write at Base 1.14.12
+ cram_load_reference at Base 1.14.12
+ cram_mem_write_callback at Base 1.14.12
+ cram_new_block at Base 1.14.12
+ cram_new_compression_header at Base 1.14.12
+ cram_new_container at Base 1.14.12
+ cram_new_metrics at Base 1.14.12
+ cram_new_slice at Base 1.14.12
+ cram_nop_decode_reset at Base 1.14.12
+ cram_open at Base 1.14.12
+ cram_open_by_callbacks at Base 1.14.12
+ cram_openw_by_callbacks at Base 1.14.12
+ cram_process_work_package at Base 1.14.12
+ cram_put_bam_seq at Base 1.14.12
+ cram_read_SAM_hdr at Base 1.14.12
+ cram_read_block at Base 1.14.12
+ cram_read_container at Base 1.14.12
+ cram_read_file_def at Base 1.14.12
+ cram_read_slice at Base 1.14.12
+ cram_ref_decr at Base 1.14.12
+ cram_ref_incr at Base 1.14.12
+ cram_ref_load at Base 1.14.12
+ cram_seek at Base 1.14.12
+ cram_seek_to_refpos at Base 1.14.12
+ cram_set_option at Base 1.14.12
+ cram_set_voption at Base 1.14.12
+ cram_stats_add at Base 1.14.12
+ cram_stats_create at Base 1.14.12
+ cram_stats_del at Base 1.14.12
+ cram_stats_dump at Base 1.14.12
+ cram_stats_encoding at Base 1.14.12
+ cram_stats_free at Base 1.14.12
+ cram_stats_qual at Base 1.14.12
+ cram_subexp_decode at Base 1.14.12
+ cram_subexp_decode_free at Base 1.14.12
+ cram_subexp_decode_init at Base 1.14.12
+ cram_uncompress_block at Base 1.14.12
+ cram_update_curr_slice at Base 1.14.12
+ cram_varint_decode_free at Base 1.14.13
+ cram_varint_decode_init at Base 1.14.13
+ cram_varint_decode_int at Base 1.14.13
+ cram_varint_decode_long at Base 1.14.13
+ cram_varint_decode_sint at Base 1.14.13
+ cram_varint_decode_size at Base 1.14.13
+ cram_varint_decode_slong at Base 1.14.13
+ cram_varint_encode_free at Base 1.14.13
+ cram_varint_encode_init at Base 1.14.13
+ cram_varint_encode_int at Base 1.14.13
+ cram_varint_encode_long at Base 1.14.13
+ cram_varint_encode_sint at Base 1.14.13
+ cram_varint_encode_slong at Base 1.14.13
+ cram_varint_encode_store at Base 1.14.13
+ cram_varint_get_block at Base 1.14.13
+ cram_write_SAM_hdr at Base 1.14.12
+ cram_write_SAM_hdr at Base 1.14.12
+ cram_write_block at Base 1.14.12
+ cram_write_container at Base 1.14.12
+ cram_write_eof_block at Base 1.14.12
+ cram_write_file_def at Base 1.14.12
+ cram_xdelta_decode_block at Base 1.14.12
+ cram_xdelta_decode_char at Base 1.14.12
+ cram_xdelta_decode_free at Base 1.14.12
+ cram_xdelta_decode_init at Base 1.14.12
+ cram_xdelta_decode_int at Base 1.14.12
+ cram_xdelta_decode_long at Base 1.14.12
+ cram_xdelta_decode_size at Base 1.14.12
+ cram_xdelta_encode_char at Base 1.14.12
+ cram_xdelta_encode_flush at Base 1.14.12
+ cram_xdelta_encode_free at Base 1.14.12
+ cram_xdelta_encode_init at Base 1.14.12
+ cram_xdelta_encode_int at Base 1.14.12
+ cram_xdelta_encode_long at Base 1.14.12
+ cram_xdelta_encode_store at Base 1.14.12
+ cram_xdelta_get_block at Base 1.14.12
+ cram_xpack_decode_char at Base 1.14.12
+ cram_xpack_decode_free at Base 1.14.12
+ cram_xpack_decode_init at Base 1.14.12
+ cram_xpack_decode_int at Base 1.14.12
+ cram_xpack_decode_long at Base 1.14.12
+ cram_xpack_decode_size at Base 1.14.12
+ cram_xpack_encode_char at Base 1.14.12
+ cram_xpack_encode_flush at Base 1.14.12
+ cram_xpack_encode_free at Base 1.14.12
+ cram_xpack_encode_init at Base 1.14.12
+ cram_xpack_encode_int at Base 1.14.12
+ cram_xpack_encode_long at Base 1.14.12
+ cram_xpack_encode_store at Base 1.14.12
+ cram_xpack_get_block at Base 1.14.12
+ cram_xrle_decode_char at Base 1.14.12
+ cram_xrle_decode_free at Base 1.14.12
+ cram_xrle_decode_init at Base 1.14.12
+ cram_xrle_decode_int at Base 1.14.12
+ cram_xrle_decode_long at Base 1.14.12
+ cram_xrle_decode_size at Base 1.14.12
+ cram_xrle_encode_char at Base 1.14.12
+ cram_xrle_encode_flush at Base 1.14.12
+ cram_xrle_encode_free at Base 1.14.12
+ cram_xrle_encode_init at Base 1.14.12
+ cram_xrle_encode_int at Base 1.14.12
+ cram_xrle_encode_long at Base 1.14.12
+ cram_xrle_encode_store at Base 1.14.12
+ cram_xrle_get_block at Base 1.14.12
+ crc32_16bytes at Base 1.14.12
+ decode_sff_common_header at Base 1.14.12
+ decode_sff_read_header at Base 1.14.12
+ decorrelate1 at Base 1.14.12
+ decorrelate1dyn at Base 1.14.12
+ decorrelate2 at Base 1.14.12
+ decorrelate2dyn at Base 1.14.12
+ decorrelate4 at Base 1.14.12
+ delete_ztr at Base 1.14.12
+ determine_trace_type at Base 1.14.12
+ dstring_append at Base 1.14.12
+ dstring_append_char at Base 1.14.12
+ dstring_append_hex_encoded at Base 1.14.12
+ dstring_append_int at Base 1.14.12
+ dstring_appendf at Base 1.14.12
+ dstring_create at Base 1.14.12
+ dstring_create_with at Base 1.14.12
+ dstring_delete at Base 1.14.12
+ dstring_destroy at Base 1.14.12
+ dstring_dinsert at Base 1.14.12
+ dstring_dreplace at Base 1.14.12
+ dstring_empty at Base 1.14.12
+ dstring_escape_html at Base 1.14.12
+ dstring_find at Base 1.14.12
+ dstring_find_replace at Base 1.14.12
+ dstring_find_replace_all at Base 1.14.12
+ dstring_htmlise_links at Base 1.14.12
+ dstring_insert at Base 1.14.12
+ dstring_insertf at Base 1.14.12
+ dstring_length at Base 1.14.12
+ dstring_nappend at Base 1.14.12
+ dstring_ninsert at Base 1.14.12
+ dstring_nprepend at Base 1.14.12
+ dstring_perror at Base 1.14.12
+ dstring_prepend at Base 1.14.12
+ dstring_prependf at Base 1.14.12
+ dstring_refresh_length at Base 1.14.12
+ dstring_replace at Base 1.14.12
+ dstring_resize at Base 1.14.12
+ dstring_str at Base 1.14.12
+ dstring_to_html at Base 1.14.12
+ dstring_vinsertf at Base 1.14.12
+ dump_labels at Base 1.14.12
+ eflt_feature_ids at Base 1.14.12
+ encode_sff_common_header at Base 1.14.12
+ encode_sff_read_header at Base 1.14.12
+ errout at Base 1.14.12
+ exp2read at Base 1.14.12
+ exp_close at Base 1.14.12
+ exp_create_info at Base 1.14.12
+ exp_create_range at Base 1.14.12
+ exp_destroy_info at Base 1.14.12
+ exp_extract_range at Base 1.14.12
+ exp_fread_info at Base 1.14.12
+ exp_get_feature_index at Base 1.14.12
+ exp_get_int at Base 1.14.12
+ exp_get_rng at Base 1.14.12
+ exp_get_str at Base 1.14.12
+ exp_mfread_info at Base 1.14.12
+ exp_print_file at Base 1.14.12
+ exp_print_line at Base 1.14.12
+ exp_print_mfile at Base 1.14.12
+ exp_print_mline at Base 1.14.12
+ exp_print_seq at Base 1.14.12
+ exp_put_int at Base 1.14.12
+ exp_put_rng at Base 1.14.12
+ exp_put_str at Base 1.14.12
+ exp_read_info at Base 1.14.12
+ exp_set_entry at Base 1.14.12
+ expand_8to16 at Base 1.14.12
+ expand_8to32 at Base 1.14.12
+ expand_cache_path at Base 1.14.12
+ expcr_ at Base 1.14.12
+ expected_template_count at Base 1.14.12
+ exper_ at Base 1.14.12
+ expkil_ at Base 1.14.12
+ expopn_ at Base 1.14.12
+ expri_ at Base 1.14.12
+ exprr_ at Base 1.14.12
+ exprs_ at Base 1.14.12
+ exprsa_ at Base 1.14.12
+ expwi_ at Base 1.14.12
+ expwr_ at Base 1.14.12
+ expws_ at Base 1.14.12
+ expwsa_ at Base 1.14.12
+ f2cstr at Base 1.14.12
+ fcompress_file at Base 1.14.12
+ fdetermine_trace_type at Base 1.14.12
+ file_exists at Base 1.14.12
+ file_size at Base 1.14.12
+ find_file_url at Base 1.14.12
+ flen at Base 1.14.12
+ follow1 at Base 1.14.12
+ fopen_compressed at Base 1.14.12
+ fread_abi at Base 1.14.12
+ fread_alf at Base 1.14.12
+ fread_pln at Base 1.14.12
+ fread_reading at Base 1.14.12
+ fread_scf at Base 1.14.12
+ fread_ztr at Base 1.14.12
+ free_sff_common_header at Base 1.14.12
+ free_sff_read_data at Base 1.14.12
+ free_sff_read_header at Base 1.14.12
+ freopen_compressed at Base 1.14.12
+ fstrlen at Base 1.14.12
+ fwrite_abi at Base 1.14.12
+ fwrite_alf at Base 1.14.12
+ fwrite_pln at Base 1.14.12
+ fwrite_reading at Base 1.14.12
+ fwrite_scf at Base 1.14.12
+ fwrite_ztr at Base 1.14.12
+ generate_code_set at Base 1.14.12
+ generate_consensus at Base 1.14.12
+ getABIIndexEntryLW at Base 1.14.12
+ getABIIndexEntrySW at Base 1.14.12
+ getABIIndexOffset at Base 1.14.12
+ getABIString at Base 1.14.12
+ getABIint1 at Base 1.14.12
+ getABIint2 at Base 1.14.12
+ getABIint4 at Base 1.14.12
+ get_compression_method at Base 1.14.12
+ get_read_conf at Base 1.14.12
+ gzi_index_add_block at Base 1.14.12
+ gzi_index_dump at Base 1.14.12
+ gzi_index_free at Base 1.14.12
+ gzi_index_init at Base 1.14.12
+ gzi_index_load at Base 1.14.12
+ gzi_load at Base 1.14.12
+ hash64 at Base 1.14.12
+ hash at Base 1.14.12
+ huffman_codes_destroy at Base 1.14.12
+ huffman_codeset_destroy at Base 1.14.12
+ huffman_decode at Base 1.14.12
+ huffman_multi_decode at Base 1.14.12
+ huffman_multi_encode at Base 1.14.12
+ ichebcomp at Base 1.14.12
+ ichebuncomp at Base 1.14.12
+ illumina_bin at Base 1.14.12
+ illumina_bin_33 at Base 1.14.12
+ init_decode_tables at Base 1.14.12
+ int32_decode at Base 1.14.12
+ int32_encode at Base 1.14.12
+ int32_get_blk at Base 1.14.12
+ int32_put at Base 1.14.12
+ int_to_float at Base 1.14.12
+ iolib_crc32 at Base 1.14.12
+ iolib_get_exp_path at Base 1.14.12
+ iolib_get_trace_path at Base 1.14.12
+ iolib_set_exp_path at Base 1.14.12
+ iolib_set_trace_path at Base 1.14.12
+ is_directory at Base 1.14.12
+ is_file at Base 1.14.12
+ is_scf at Base 1.14.12
+ itf8_bytes at Base 1.14.12
+ itf8_decode_crc at Base 1.14.12
+ itf8_put_blk at Base 1.14.12
+ itf8_size at Base 1.14.12
+ le_read_int_1 at Base 1.14.12
+ le_read_int_2 at Base 1.14.12
+ le_read_int_4 at Base 1.14.12
+ le_read_int_8 at Base 1.14.12
+ le_write_int_1 at Base 1.14.12
+ le_write_int_2 at Base 1.14.12
+ le_write_int_4 at Base 1.14.12
+ le_write_int_8 at Base 1.14.12
+ load_ref_portion at Base 1.14.12
+ log2_data at Base 1.14.12
+ lossy_read_names at Base 1.14.12
+ ltf8_bytes at Base 1.14.12
+ ltf8_decode at Base 1.14.12
+ ltf8_decode_crc at Base 1.14.12
+ ltf8_put_blk at Base 1.14.12
+ memgunzip at Base 1.14.12
+ memgzip at Base 1.14.12
+ mfascii at Base 1.14.12
+ mfclose at Base 1.14.12
+ mfcreate at Base 1.14.12
+ mfcreate_from at Base 1.14.12
+ mfdestroy at Base 1.14.12
+ mfdetach at Base 1.14.12
+ mfeof at Base 1.14.12
+ mfflush at Base 1.14.12
+ mfgetc at Base 1.14.12
+ mfgets at Base 1.14.12
+ mfmmap at Base 1.14.12
+ mfopen at Base 1.14.12
+ mfprintf at Base 1.14.12
+ mfread at Base 1.14.12
+ mfread_abi at Base 1.14.12
+ mfread_alf at Base 1.14.12
+ mfread_pln at Base 1.14.12
+ mfread_reading at Base 1.14.12
+ mfread_scf at Base 1.14.12
+ mfread_sff at Base 1.14.12
+ mfread_ztr at Base 1.14.12
+ mfrecreate at Base 1.14.12
+ mfreopen at Base 1.14.12
+ mfseek at Base 1.14.12
+ mfsteal at Base 1.14.12
+ mftell at Base 1.14.12
+ mftruncate at Base 1.14.12
+ mfwrite at Base 1.14.12
+ mfwrite_abi at Base 1.14.12
+ mfwrite_alf at Base 1.14.12
+ mfwrite_pln at Base 1.14.12
+ mfwrite_reading at Base 1.14.12
+ mfwrite_scf at Base 1.14.12
+ mfwrite_ztr at Base 1.14.12
+ mkdir_prefix at Base 1.14.12
+ mrewind at Base 1.14.12
+ mstderr at Base 1.14.12
+ mstdin at Base 1.14.12
+ mstdout at Base 1.14.12
+ mungetc at Base 1.14.12
+ myfind at Base 1.14.12
+ mystrtok at Base 1.14.12
+ new_ztr at Base 1.14.12
+ next_symbol at Base 1.14.12
+ open_exp_file at Base 1.14.12
+ open_exp_mfile at Base 1.14.12
+ open_fofn at Base 1.14.12
+ open_path_file at Base 1.14.12
+ open_path_mfile at Base 1.14.12
+ open_trace_file at Base 1.14.12
+ open_trace_mfile at Base 1.14.12
+ opos2str at Base 1.14.12
+ pack_trace_suffix at Base 1.14.12
+ paranoid_fclose at Base 1.14.12
+ partial_decode_ztr at Base 1.14.12
+ pool_alloc at Base 1.14.12
+ pool_create at Base 1.14.12
+ pool_destroy at Base 1.14.12
+ pool_free at Base 1.14.12
+ qshift at Base 1.14.12
+ read2exp at Base 1.14.12
+ read2scf at Base 1.14.12
+ read2ztr at Base 1.14.12
+ read_abi at Base 1.14.12
+ read_alf at Base 1.14.12
+ read_allocate at Base 1.14.12
+ read_deallocate at Base 1.14.12
+ read_dup at Base 1.14.12
+ read_experiment_redirect at Base 1.14.12
+ read_fofn at Base 1.14.12
+ read_pln at Base 1.14.12
+ read_reading at Base 1.14.12
+ read_scf at Base 1.14.12
+ read_scf_base at Base 1.14.12
+ read_scf_bases3 at Base 1.14.12
+ read_scf_bases at Base 1.14.12
+ read_scf_comment at Base 1.14.12
+ read_scf_header at Base 1.14.12
+ read_scf_sample1 at Base 1.14.12
+ read_scf_sample2 at Base 1.14.12
+ read_scf_samples1 at Base 1.14.12
+ read_scf_samples2 at Base 1.14.12
+ read_scf_samples31 at Base 1.14.12
+ read_scf_samples32 at Base 1.14.12
+ read_sections at Base 1.14.12
+ read_sff_common_header at Base 1.14.12
+ read_sff_read_data at Base 1.14.12
+ read_sff_read_header at Base 1.14.12
+ read_update_base_positions at Base 1.14.12
+ read_update_confidence_values at Base 1.14.12
+ recorrelate1 at Base 1.14.12
+ recorrelate2 at Base 1.14.12
+ recorrelate4 at Base 1.14.12
+ refs2id at Base 1.14.12
+ refs_free at Base 1.14.12
+ refs_load_fai at Base 1.14.12
+ remove_extension at Base 1.14.12
+ remove_file at Base 1.14.12
+ reset_metrics at Base 1.14.12
+ restore_codes at Base 1.14.12
+ restore_codes_single at Base 1.14.12
+ rle at Base 1.14.12
+ safe_itf8_put at Base 1.14.12
+ safe_ltf8_put at Base 1.14.12
+ sam_hdr_PG_ID at Base 1.14.12
+ sam_hdr_add at Base 1.14.12
+ sam_hdr_add_PG at Base 1.14.12
+ sam_hdr_add_lines at Base 1.14.12
+ sam_hdr_decr_ref at Base 1.14.12
+ sam_hdr_dump at Base 1.14.12
+ sam_hdr_dup at Base 1.14.12
+ sam_hdr_find at Base 1.14.12
+ sam_hdr_find_key at Base 1.14.12
+ sam_hdr_find_line at Base 1.14.12
+ sam_hdr_find_rg at Base 1.14.12
+ sam_hdr_free at Base 1.14.12
+ sam_hdr_incr_ref at Base 1.14.12
+ sam_hdr_length at Base 1.14.12
+ sam_hdr_link_pg at Base 1.14.12
+ sam_hdr_name2ref at Base 1.14.12
+ sam_hdr_new at Base 1.14.12
+ sam_hdr_parse at Base 1.14.12
+ sam_hdr_rebuild at Base 1.14.12
+ sam_hdr_sort_order at Base 1.14.12
+ sam_hdr_str at Base 1.14.12
+ sam_hdr_update at Base 1.14.12
+ sam_hdr_vadd at Base 1.14.12
+ scf2read at Base 1.14.12
+ scf_allocate at Base 1.14.12
+ scf_deallocate at Base 1.14.12
+ scf_delta_samples1 at Base 1.14.12
+ scf_delta_samples2 at Base 1.14.12
+ scf_version_float2str at Base 1.14.12
+ scf_version_str2float at Base 1.14.12
+ scram_close at Base 1.14.12
+ scram_get_header at Base 1.14.12
+ scram_get_refs at Base 1.14.12
+ scram_get_seq at Base 1.14.12
+ scram_init at Base 1.14.12
+ scram_input_bam_block at Base 1.14.12
+ scram_line at Base 1.14.12
+ scram_next_seq at Base 1.14.12
+ scram_open at Base 1.14.12
+ scram_open_cram_via_callbacks at Base 1.14.12
+ scram_put_seq at Base 1.14.12
+ scram_set_header at Base 1.14.12
+ scram_set_option at Base 1.14.12
+ scram_set_refs at Base 1.14.12
+ scram_write_header at Base 1.14.12
+ set_compression_method at Base 1.14.12
+ set_scf_version at Base 1.14.12
+ shrink_16to8 at Base 1.14.12
+ shrink_32to8 at Base 1.14.12
+ srf_construct_cont_hdr at Base 1.14.12
+ srf_construct_trace_body at Base 1.14.12
+ srf_construct_trace_hdr at Base 1.14.12
+ srf_create at Base 1.14.12
+ srf_destroy at Base 1.14.12
+ srf_destroy_cont_hdr at Base 1.14.12
+ srf_destroy_trace_body at Base 1.14.12
+ srf_destroy_trace_hdr at Base 1.14.12
+ srf_find_trace at Base 1.14.12
+ srf_index_add_cont_hdr at Base 1.14.12
+ srf_index_add_trace_body at Base 1.14.12
+ srf_index_add_trace_hdr at Base 1.14.12
+ srf_index_create at Base 1.14.12
+ srf_index_destroy at Base 1.14.12
+ srf_index_stats at Base 1.14.12
+ srf_index_write at Base 1.14.12
+ srf_next_block_details at Base 1.14.12
+ srf_next_block_type at Base 1.14.12
+ srf_next_trace at Base 1.14.12
+ srf_next_ztr at Base 1.14.12
+ srf_next_ztr_flags at Base 1.14.12
+ srf_open at Base 1.14.12
+ srf_read_cont_hdr at Base 1.14.12
+ srf_read_index_hdr at Base 1.14.12
+ srf_read_pstring at Base 1.14.12
+ srf_read_trace_body at Base 1.14.12
+ srf_read_trace_hdr at Base 1.14.12
+ srf_read_uint32 at Base 1.14.12
+ srf_read_uint64 at Base 1.14.12
+ srf_read_xml at Base 1.14.12
+ srf_write_cont_hdr at Base 1.14.12
+ srf_write_index_hdr at Base 1.14.12
+ srf_write_pstring at Base 1.14.12
+ srf_write_pstringb at Base 1.14.12
+ srf_write_trace_body at Base 1.14.12
+ srf_write_trace_hdr at Base 1.14.12
+ srf_write_uint32 at Base 1.14.12
+ srf_write_uint64 at Base 1.14.12
+ srf_write_xml at Base 1.14.12
+ sthuff at Base 1.14.12
+ store_bytes at Base 1.14.12
+ store_codes at Base 1.14.12
+ store_codes_single at Base 1.14.12
+ str2conf at Base 1.14.12
+ str2opos at Base 1.14.12
+ str_tolower at Base 1.14.12
+ str_toupper at Base 1.14.12
+ string_alloc at Base 1.14.12
+ string_dup at Base 1.14.12
+ string_ndup at Base 1.14.12
+ string_pool_create at Base 1.14.12
+ string_pool_destroy at Base 1.14.12
+ stringify_argv at Base 1.14.12
+ t_pool_delete_result at Base 1.14.12
+ t_pool_destroy at Base 1.14.12
+ t_pool_dispatch2 at Base 1.14.12
+ t_pool_dispatch at Base 1.14.12
+ t_pool_flush at Base 1.14.12
+ t_pool_init at Base 1.14.12
+ t_pool_next_result at Base 1.14.12
+ t_pool_next_result_wait at Base 1.14.12
+ t_pool_results_queue_empty at Base 1.14.12
+ t_pool_results_queue_len at Base 1.14.12
+ t_pool_results_queue_sz at Base 1.14.12
+ t_results_queue_destroy at Base 1.14.12
+ t_results_queue_init at Base 1.14.12
+ tokenise_search_path at Base 1.14.12
+ trace_type_int2str at Base 1.14.12
+ trace_type_str2int at Base 1.14.12
+ trace_type_str at Base 1.14.12
+ tshift at Base 1.14.12
+ uncompress_chunk at Base 1.14.12
+ uncompress_ztr at Base 1.14.12
+ unfollow1 at Base 1.14.12
+ unlog2_data at Base 1.14.12
+ unqshift at Base 1.14.12
+ unrle at Base 1.14.12
+ unsthuff at Base 1.14.12
+ untshift at Base 1.14.12
+ unxrle2 at Base 1.14.12
+ unxrle at Base 1.14.12
+ vflen at Base 1.14.12
+ write_abi at Base 1.14.12
+ write_alf at Base 1.14.12
+ write_pln at Base 1.14.12
+ write_reading at Base 1.14.12
+ write_scf at Base 1.14.12
+ write_scf_base at Base 1.14.12
+ write_scf_bases3 at Base 1.14.12
+ write_scf_bases at Base 1.14.12
+ write_scf_comment at Base 1.14.12
+ write_scf_header at Base 1.14.12
+ write_scf_sample1 at Base 1.14.12
+ write_scf_sample2 at Base 1.14.12
+ write_scf_samples1 at Base 1.14.12
+ write_scf_samples2 at Base 1.14.12
+ write_scf_samples31 at Base 1.14.12
+ write_scf_samples32 at Base 1.14.12
+ xcalloc at Base 1.14.12
+ xfree at Base 1.14.12
+ xmalloc at Base 1.14.12
+ xrealloc at Base 1.14.12
+ xrle2 at Base 1.14.12
+ xrle at Base 1.14.12
+ zfclose at Base 1.14.12
+ zfeof at Base 1.14.12
+ zfgets at Base 1.14.12
+ zfopen at Base 1.14.12
+ zfpeek at Base 1.14.12
+ zfputs at Base 1.14.12
+ zfseeko at Base 1.14.12
+ zftello at Base 1.14.12
+ zlib_dehuff at Base 1.14.12
+ zlib_huff at Base 1.14.12
+ zlib_mem_inflate at Base 1.14.12
+ ztr2read at Base 1.14.12
+ ztr_add_hcode at Base 1.14.12
+ ztr_add_text at Base 1.14.12
+ ztr_dup at Base 1.14.12
+ ztr_find_chunks at Base 1.14.12
+ ztr_find_hcode at Base 1.14.12
+ ztr_find_hcode_chunk at Base 1.14.12
+ ztr_lookup_mdata_value at Base 1.14.12
+ ztr_new_chunk at Base 1.14.12
+ ztr_process_text at Base 1.14.12
+ ztr_read_chunk_hdr at Base 1.14.12
+ ztr_read_header at Base 1.14.12
+ ztr_store_hcodes at Base 1.14.12
diff -Nru staden-io-lib-1.15.0/debian/rules staden-io-lib-1.15.0/debian/rules
--- staden-io-lib-1.15.0/debian/rules 2024-01-20 19:35:25.000000000 +0000
+++ staden-io-lib-1.15.0/debian/rules 2024-03-01 12:46:05.000000000 +0000
@@ -26,6 +26,7 @@
#
# Call d-shlibmove to comply with library packaging guide
d-shlibmove --commit \
+ --t64 \
--multiarch \
--devunversioned \
--exclude-la \
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