<div dir="ltr"><div dir="ltr"><br></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">Le jeu. 28 mai 2020 à 13:00, Andreas Tille <<a href="mailto:tille@debian.org">tille@debian.org</a>> a écrit :<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi Olivier and Vincent<br>
<br>
On Thu, May 28, 2020 at 09:47:37AM +0300, Adrian Bunk wrote:<br>
> <br>
> picard-tools build depends on libguava-java-doc,<br>
> which is no longer built by src:guava-libraries.<br></blockquote><div><br></div><div>Hi andreas,</div><div>looking at issue, where did you find that libguava-java-doc is no longer built ?</div><div>I looked at <a href="https://packages.debian.org/source/sid/guava-libraries">https://packages.debian.org/source/sid/guava-libraries</a> and still see -doc package</div><div><br></div><div>Olivier</div><div><br></div><div> </div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
<br>
I've tried to simply leave out libguava-java-doc but either this breaks<br>
a test or the package is failing its build time test for some other<br>
reason:<br>
<br>
<br>
* Exception is:<br>
org.gradle.api.tasks.TaskExecutionException: Execution failed for task ':barclayTest'.<br>
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:100)<br>
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.execute(ExecuteActionsTaskExecuter.java:70)<br>
at org.gradle.api.internal.tasks.execution.OutputDirectoryCreatingTaskExecuter.execute(OutputDirectoryCreatingTaskExecuter.java:51)<br>
at org.gradle.api.internal.tasks.execution.SkipUpToDateTaskExecuter.execute(SkipUpToDateTaskExecuter.java:62)<br>
at org.gradle.api.internal.tasks.execution.ResolveTaskOutputCachingStateExecuter.execute(ResolveTaskOutputCachingStateExecuter.java:54)<br>
at org.gradle.api.internal.tasks.execution.ValidatingTaskExecuter.execute(ValidatingTaskExecuter.java:60)<br>
at org.gradle.api.internal.tasks.execution.SkipEmptySourceFilesTaskExecuter.execute(SkipEmptySourceFilesTaskExecuter.java:97)<br>
at org.gradle.api.internal.tasks.execution.CleanupStaleOutputsExecuter.execute(CleanupStaleOutputsExecuter.java:87)<br>
at org.gradle.api.internal.tasks.execution.ResolveTaskArtifactStateTaskExecuter.execute(ResolveTaskArtifactStateTaskExecuter.java:52)<br>
at org.gradle.api.internal.tasks.execution.SkipTaskWithNoActionsExecuter.execute(SkipTaskWithNoActionsExecuter.java:52)<br>
at org.gradle.api.internal.tasks.execution.SkipOnlyIfTaskExecuter.execute(SkipOnlyIfTaskExecuter.java:54)<br>
at org.gradle.api.internal.tasks.execution.ExecuteAtMostOnceTaskExecuter.execute(ExecuteAtMostOnceTaskExecuter.java:43)<br>
at org.gradle.api.internal.tasks.execution.CatchExceptionTaskExecuter.execute(CatchExceptionTaskExecuter.java:34)<br>
at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker$1.run(DefaultTaskGraphExecuter.java:248)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)<br>
at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:241)<br>
at org.gradle.execution.taskgraph.DefaultTaskGraphExecuter$EventFiringTaskWorker.execute(DefaultTaskGraphExecuter.java:230)<br>
at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.processTask(DefaultTaskPlanExecutor.java:123)<br>
at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.access$200(DefaultTaskPlanExecutor.java:79)<br>
at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:104)<br>
at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker$1.execute(DefaultTaskPlanExecutor.java:98)<br>
at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.execute(DefaultTaskExecutionPlan.java:626)<br>
at org.gradle.execution.taskgraph.DefaultTaskExecutionPlan.executeWithTask(DefaultTaskExecutionPlan.java:581)<br>
at org.gradle.execution.taskgraph.DefaultTaskPlanExecutor$TaskExecutorWorker.run(DefaultTaskPlanExecutor.java:98)<br>
at org.gradle.internal.concurrent.ExecutorPolicy$CatchAndRecordFailures.onExecute(ExecutorPolicy.java:63)<br>
at org.gradle.internal.concurrent.ManagedExecutorImpl$1.run(ManagedExecutorImpl.java:46)<br>
at org.gradle.internal.concurrent.ThreadFactoryImpl$ManagedThreadRunnable.run(ThreadFactoryImpl.java:55)<br>
Caused by: org.gradle.api.GradleException: There were failing tests. See the report at: file:///build/picard-tools-2.18.25+dfsg/build/reports/tests/barclayTest/index.html<br>
at org.gradle.api.tasks.testing.AbstractTestTask.handleTestFailures(AbstractTestTask.java:547)<br>
at org.gradle.api.tasks.testing.AbstractTestTask.executeTests(AbstractTestTask.java:464)<br>
at org.gradle.api.tasks.testing.Test.executeTests(Test.java:530)<br>
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)<br>
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)<br>
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)<br>
at org.gradle.internal.reflect.JavaMethod.invoke(JavaMethod.java:73)<br>
at org.gradle.api.internal.project.taskfactory.StandardTaskAction.doExecute(StandardTaskAction.java:46)<br>
at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:39)<br>
at org.gradle.api.internal.project.taskfactory.StandardTaskAction.execute(StandardTaskAction.java:26)<br>
at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:780)<br>
at org.gradle.api.internal.AbstractTask$TaskActionWrapper.execute(AbstractTask.java:747)<br>
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter$1.run(ExecuteActionsTaskExecuter.java:121)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:336)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor$RunnableBuildOperationWorker.execute(DefaultBuildOperationExecutor.java:328)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor.execute(DefaultBuildOperationExecutor.java:199)<br>
at org.gradle.internal.progress.DefaultBuildOperationExecutor.run(DefaultBuildOperationExecutor.java:110)<br>
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeAction(ExecuteActionsTaskExecuter.java:110)<br>
at org.gradle.api.internal.tasks.execution.ExecuteActionsTaskExecuter.executeActions(ExecuteActionsTaskExecuter.java:92)<br>
... 29 more<br>
<br>
<br>
* Get more help at <a href="https://help.gradle.org" rel="noreferrer" target="_blank">https://help.gradle.org</a><br>
<br>
<br>
The actual test that fails is<br>
src/test/java/picard/sam/PipedDataTest.java (for whatever reason).<br>
<br>
We are lagging behind upstream anyway and I wonder whether you might<br>
find some time to update the package to the recent upstream version. I<br>
would do so but from the past I've learned that this package always<br>
creates hassle I can't solve when trying to upgrade. So any help would<br>
be really welcome here - specifically since I'm currently hunting behind<br>
so many other stuff that I'd love to avoid things where I've proven to<br>
be incompetent for.<br>
<br>
Kind regards<br>
<br>
Andreas.<br>
<br>
-- <br>
<a href="http://fam-tille.de" rel="noreferrer" target="_blank">http://fam-tille.de</a><br>
</blockquote></div><br clear="all"><div><br></div>-- <br><div dir="ltr" class="gmail_signature"><pre cols="72">gpg key id: 4096R/326D8438 (<a href="http://keyring.debian.org/" target="_blank">keyring.debian.org</a>)</pre><pre cols="72">Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438</pre></div></div>