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I have been using samtools for many HTS workflows now, and I recently started building some Docker images that need to include it. </div>
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I noticed that <span style="font-family: Consolas, Courier, monospace;">apt-cache depends samtools</span> lists as "Recommends" packages both cwltool and python. </div>
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I suggest that if someone knows they need cwltool (I've used it), they will install it separately. I can see samtools as Recommends for cwltool given the frequency that HTS workflows would need it. Python is completely unrelated to samtools in my mind, except
that it's a requirement for cwltool. </div>
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If anything, I think that those cwltool dependency can be changed from "Recommends" to "Suggests", and I think the python dependency could be removed entirely, given that cwltool already has python3 as a dependency. </div>
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That way I wouldn't need to include --no-install-recommends whenever I apt-get install samtools.</div>
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Thanks, alan</div>
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<div>--</div>
<div>Alan Hoyle - alanh@unc.edu</div>
<div>Bioinformatics Scientist</div>
<div>UNC Lineberger - Bioinformatics Core</div>
<div>https://lbc.unc.edu/</div>
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