<div dir="auto"><div style="font-family:sans-serif" dir="auto">Hi Andreas,</div><div dir="auto" style="font-family:sans-serif"><br></div><div dir="auto" style="font-family:sans-serif"><div dir="auto">Yes definitely, this is long overdue. I have a report due for submission tonight, so I'll get to this tomorrow for sure.</div><div dir="auto"><br></div>Regards,</div><div dir="auto" style="font-family:sans-serif">Pranav</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, 9 Jun, 2020, 7:41 PM Andreas Tille, <<a href="mailto:andreas@an3as.eu">andreas@an3as.eu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Pranav,<br>
<br>
since you dealt with tests in this package could you please have<br>
a look?<br>
<br>
Kind regards<br>
<br>
Andreas.<br>
<br>
On Sat, May 16, 2020 at 02:50:12PM +0300, Adrian Bunk wrote:<br>
> Source: tree-puzzle<br>
> Version: 5.3~rc16+dfsg-1<br>
> Severity: serious<br>
> Tags: ftbfs<br>
> <br>
> Based on the "Important remark" below, test failures shouldn't be fatal.<br>
> This would also make them not suitable for autopkgtest.<br>
> <br>
> <br>
> <a href="https://buildd.debian.org/status/package.php?p=tree-puzzle&suite=sid" rel="noreferrer noreferrer" target="_blank">https://buildd.debian.org/status/package.php?p=tree-puzzle&suite=sid</a><br>
> <br>
> ...<br>
> FAIL: qp-hky-rhet-nucl<br>
> ======================<br>
> <br>
> <br>
> Testing: nucleotide data, HKY, rate heterogeneity, quartet puzzling (qp-hky-rhet-nucl)<br>
> 327c327<br>
> < Dasyurus 3 0.00001 0.00268 11 0.07879 0.07178<br>
> ---<br>
> > Dasyurus 3 0.00001 0.00141 11 0.07879 0.07178<br>
> FAIL qp-hky-rhet-nucl.test (exit status: 1)<br>
> <br>
> FAIL: qp-hky-rhet-clock-nucl<br>
> ============================<br>
> <br>
> <br>
> Testing: nucleotide data, HKY, clock, rate heterogeneity, quartet puzzling (qp-hky-rhet-clock-nucl)<br>
> 327c327<br>
> < Dasyurus 3 0.00001 0.00268 11 0.07879 0.07178<br>
> ---<br>
> > Dasyurus 3 0.00001 0.00141 11 0.07879 0.07178<br>
> FAIL qp-hky-rhet-clock-nucl.test (exit status: 1)<br>
> <br>
> FAIL: qp-jtt-rhet-prot<br>
> ======================<br>
> <br>
> <br>
> Testing: protein data, JTT, rate heterogeneity, quartet puzzling (qp-jtt-rhet-prot)<br>
> 295c295<br>
> < HBA_HUMAN 3 0.01975 0.02293 10 0.74671 0.14184<br>
> ---<br>
> > HBA_HUMAN 3 0.01975 0.02294 10 0.74671 0.14184<br>
> FAIL qp-jtt-rhet-prot.test (exit status: 1)<br>
> <br>
> FAIL: qp-jtt-rhet-clock-prot<br>
> ============================<br>
> <br>
> <br>
> Testing: protein data, JTT, clock, rate heterogeneity, quartet puzzling (qp-jtt-rhet-clock-prot)<br>
> 295c295<br>
> < HBA_HUMAN 3 0.01975 0.02293 10 0.74671 0.14184<br>
> ---<br>
> > HBA_HUMAN 3 0.01975 0.02294 10 0.74671 0.14184<br>
> FAIL qp-jtt-rhet-clock-prot.test (exit status: 1)<br>
> <br>
> FAIL: ut-pure-prot<br>
> ==================<br>
> <br>
> <br>
> Testing: protein data, default model, user tree evaluation (ut-pure-prot)<br>
> 178c178<br>
> < HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00105<br>
> ---<br>
> > HBB_HORSE 2 0.12686 0.03876 9 0.00001 0.00100<br>
> 218c218<br>
> < HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08777<br>
> ---<br>
> > HBB_HUMAN 1 0.04915 0.03158 8 0.28347 0.08778<br>
> 258c258<br>
> < HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15663<br>
> ---<br>
> > HBB_HORSE 2 0.12653 0.03874 9 0.12334 0.15661<br>
> FAIL ut-pure-prot.test (exit status: 1)<br>
> <br>
> FAIL: cons-pure-prot<br>
> ====================<br>
> <br>
> <br>
> Testing: protein data, default model, consensus construction (cons-pure-prot)<br>
> 230c230<br>
> < HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08745<br>
> ---<br>
> > HBB_HUMAN 1 0.04834 0.03148 8 0.28040 0.08746<br>
> FAIL cons-pure-prot.test (exit status: 1)<br>
> <br>
> SKIP: build-remark<br>
> ==================<br>
> <br>
> <br>
> ***<br>
> *** !!! Important remark !!!<br>
> ***<br>
> *** Please note that only the output file *.puzzle is checked<br>
> *** for identity. The overall precision reached in the program<br>
> *** is heavily dependent on the compiler as well as the optimization<br>
> *** level (-O) used to compile the executable.<br>
> *** Hence, even if tests are marked as failed this might just be<br>
> *** due to differences in less significant digits caused by rounding<br>
> *** errors from less acurate computations for the sake of faster<br>
> *** running times. (If you want to be sure about this please refer<br>
> *** to your compiler's manual!)<br>
> ***<br>
> *** Please check the output file differences which are printed during the tests.<br>
> *** The template files which the results are checked against have been<br>
> *** generated with TREE-PUZZLE 5.2 compiled with GCC version 3.3-20030226<br>
> *** and default compiler flags '-g -O2' and using the SPRNG random number<br>
> *** generator.<br>
> ***<br>
> <br>
> SKIP build-remark (exit status: 77)<br>
> <br>
> ============================================================================<br>
> Testsuite summary for tree-puzzle 5.3.rc16<br>
> ============================================================================<br>
> # TOTAL: 19<br>
> # PASS: 11<br>
> # SKIP: 2<br>
> # XFAIL: 0<br>
> # FAIL: 6<br>
> # XPASS: 0<br>
> # ERROR: 0<br>
> ============================================================================<br>
> See tests/test-suite.log<br>
> ============================================================================<br>
> make[5]: *** [Makefile:563: test-suite.log] Error 1<br>
> make[5]: Leaving directory '/<<PKGBUILDDIR>>/tests'<br>
> <br>
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<br>
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</blockquote></div>