<div dir="ltr"><div dir="ltr"><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Control: tags -1 moreinfo</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Control: severity -1 important</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Control: tags -1 unreproducible</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif"><br></div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Hi Andreas,</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">I tried reproducing this bug but all tests simply pass for me, even when I manually install the specified versions.</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">The compression doesn't seem to have any effect on the tests for me.</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif"><br></div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Regards,</div><div class="gmail_default" style="font-family:arial,helvetica,sans-serif">Pranav</div></div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Tue, Jul 21, 2020 at 3:46 PM Andreas Tille <<a href="mailto:tille@debian.org">tille@debian.org</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">Hi Pranav,<br>
<br>
On Mon, Jul 06, 2020 at 12:06:06PM +0300, Adrian Bunk wrote:<br>
> <br>
> The actual problem is:<br>
> Due to the dh compat bump in gff2aplot the gffread autopkgtest runs<br>
> additional tests, and on two of these gffread is segfaulting.<br>
<br>
I've checked the debdiff of the two binary packages in question<br>
which are affected by the debhelper compat bump:<br>
<br>
$ debdiff gff2aplot_2.0-11_amd64.deb gff2aplot_2.0-12_amd64.deb<br>
[The following lists of changes regard files as different if they have<br>
different names, permissions or owners.]<br>
<br>
Files in second .deb but not in first<br>
-------------------------------------<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/README<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sim<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sim.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs.fa<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/kk.sim<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/mm.fa<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/<a href="http://KCRB.AG" target="_blank">KCRB.AG</a>.hs-mm.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/<a href="http://KCRB.GT" target="_blank">KCRB.GT</a>.hs-mm.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/<a href="http://KCRB.hs.gb" rel="noreferrer" target="_blank">KCRB.hs.gb</a><br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/<a href="http://KCRB.mm.gb" rel="noreferrer" target="_blank">KCRB.mm.gb</a><br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/README<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/README<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/<a href="http://taf6.hs.gene.gb" rel="noreferrer" target="_blank">taf6.hs.gene.gb</a><br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/<a href="http://taf6.mm.gene.gb" rel="noreferrer" target="_blank">taf6.mm.gene.gb</a><br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff<br>
<br>
Files in first .deb but not in second<br>
-------------------------------------<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/README.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sim.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.sim.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs-mm.tblastx.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/hs.fa.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/kk.sim.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/mhcregion/mm.fa.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/<a href="http://KCRB.AG" target="_blank">KCRB.AG</a>.hs-mm.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/<a href="http://KCRB.GT" target="_blank">KCRB.GT</a>.hs-mm.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.hs.gb.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/KCRB.mm.gb.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/splice_sites/README.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/README.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.hs.gene.gb.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mm.gene.gb.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.full.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.blastn.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.aplot.gff.gz<br>
-rw-r--r-- root/root /usr/share/doc/gff2aplot/examples/wublast/taf6.mmhs.genomic.tblastx.gff.gz<br>
<br>
Control files: lines which differ (wdiff format)<br>
------------------------------------------------<br>
Installed-Size: [-647-] {+1451+}<br>
Version: [-2.0-11-] {+2.0-12+}<br>
<br>
<br>
So the files are not compressed now any more. Could you have<br>
a look at the consequences this has on the test in gffread?<br>
<br>
Kind regards<br>
<br>
Andreas.<br>
<br>
-- <br>
<a href="http://fam-tille.de" rel="noreferrer" target="_blank">http://fam-tille.de</a><br>
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