<div dir="ltr">To elaborate: when I look at <a href="https://salsa.debian.org/med-team/plink2/-/tree/master">https://salsa.debian.org/med-team/plink2/-/tree/master</a> , I can see that plink2.cc, include/plink2_base.h, and include/plink2_base.cc don't have the same contents as the v2.00a3-20220218 GitHub tag/release. So I don't know where you grabbed the code from this time, but it does not appear to be from GitHub.</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Feb 19, 2022 at 7:54 AM Chris Chang <<a href="mailto:chrchang523@gmail.com">chrchang523@gmail.com</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex"><div dir="ltr">If you build off the current head, the version string should say "18 Feb 2022", not "17 Feb 2022".</div><br><div class="gmail_quote"><div dir="ltr" class="gmail_attr">On Sat, Feb 19, 2022 at 7:02 AM Andreas Tille <<a href="mailto:andreas@an3as.eu" target="_blank">andreas@an3as.eu</a>> wrote:<br></div><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left-width:1px;border-left-style:solid;border-left-color:rgb(204,204,204);padding-left:1ex">Hi again,<br>
<br>
Am Sat, Feb 19, 2022 at 12:28:21AM -0800 schrieb Chris Chang:<br>
> Ok, new release/tag created.<br>
<br>
I've built the new version now. The bad news is that it keeps on<br>
SEGFAULTing for me:<br>
<br>
...<br>
(gdb) run<br>
Starting program: /usr/lib/plink2/plink2-sse3 --debug --pfile tmp_data --export vcf vcf-dosage=DS --out tmp_data2<br>
[Thread debugging using libthread_db enabled]<br>
Using host libthread_db library "/lib/x86_64-linux-gnu/libthread_db.so.1".<br>
[New Thread 0x7ffff4cc7640 (LWP 985019)]<br>
[New Thread 0x7ffff44c6640 (LWP 985020)]<br>
[New Thread 0x7fffebcc5640 (LWP 985021)]<br>
PLINK v2.00a3 64-bit (17 Feb 2022) <a href="http://www.cog-genomics.org/plink/2.0/" rel="noreferrer" target="_blank">www.cog-genomics.org/plink/2.0/</a><br>
(C) 2005-2022 Shaun Purcell, Christopher Chang GNU General Public License v3<br>
Logging to tmp_data2.log.<br>
Options in effect:<br>
--debug<br>
--export vcf vcf-dosage=DS<br>
--out tmp_data2<br>
--pfile tmp_data<br>
<br>
Start time: Sat Feb 19 16:00:00 2022<br>
31998 MiB RAM detected; reserving 15999 MiB for main workspace.<br>
Using up to 4 compute threads.<br>
[New Thread 0x7ffff7fc5640 (LWP 985022)]<br>
<br>
Thread 1 "plink2-sse3" received signal SIGSEGV, Segmentation fault.<br>
plink2::LoadPsam (psamname=psamname@entry=0x7fffffffbe60 "tmp_data.psam", pheno_range_list_ptr=<optimized out>, fam_cols=..., pheno_ct_max=<optimized out>, <br>
missing_pheno=<optimized out>, affection_01=0, max_thread_ct=4, piip=0x7fffffff8870, sample_include_ptr=0x7fffffff8790, founder_info_ptr=0x7fffffff87a8, sex_nm_ptr=0x7fffffff8798, <br>
sex_male_ptr=0x7fffffff87a0, pheno_cols_ptr=0x7fffffff8770, pheno_names_ptr=0x7fffffff8780, raw_sample_ct_ptr=0x7fffffff8728, pheno_ct_ptr=0x7fffffff8720, <br>
max_pheno_name_blen_ptr=0x7fffffff87b0) at ../plink2_psam.cc:611<br>
611 pheno_cols[pheno_idx].nonmiss = nullptr;<br>
<br>
<br>
Please let me know if I can do further checks.<br>
<br>
Kind regards<br>
<br>
Andreas.<br>
<br>
-- <br>
<a href="http://fam-tille.de" rel="noreferrer" target="_blank">http://fam-tille.de</a><br>
</blockquote></div>
</blockquote></div>