[From nobody Fri Jun 12 15:35:10 2026 Received: (at maintonly) by bugs.debian.org; 11 May 2026 20:41:28 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-15.3 required=4.0 tests=BAYES_00, BODY_INCLUDES_PACKAGE,DKIM_SIGNED,DKIM_VALID,DKIM_VALID_EF, FREEMAIL_FORGED_FROMDOMAIN,FREEMAIL_FROM,FROMDEVELOPER, FVGT_m_MULTI_ODD,HEADER_FROM_DIFFERENT_DOMAINS,MONEY,PGPSIGNATURE, RCVD_IN_DNSWL_NONE,SPF_HELO_NONE,SPF_PASS autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 126; hammy, 150; neutral, 146; spammy, 0. spammytokens: hammytokens:0.000-+--sk:iQIzBAE, 0.000-+--sk:iqizbae, 0.000-+--forky, 0.000-+--wdatetime, 0.000-+--Wdatetime Return-path: <gladky.anton@gmail.com> Received: from mail-wm1-x336.google.com ([2a00:1450:4864:20::336]:53445) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_X25519__RSA_PSS_RSAE_SHA256__AES_128_GCM:128) (Exim 4.96) (envelope-from <gladky.anton@gmail.com>) id 1wMXRO-00738B-1i for maintonly@bugs.debian.org; Mon, 11 May 2026 20:41:28 +0000 Received: by mail-wm1-x336.google.com with SMTP id 5b1f17b1804b1-488e1a8ac40so46965125e9.2 for <maintonly@bugs.debian.org>; Mon, 11 May 2026 13:41:26 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20251104; t=1778532084; x=1779136884; darn=bugs.debian.org; h=date:message-id:subject:from:to:sender:from:to:cc:subject:date :message-id:reply-to; bh=GJbdjIzUwAitao9vaU2j4FuYFwAWS0FDe62Kzu2cnGs=; b=E3PAlL2o7n+o8ZHoMHcsMnG09dlqp4rXsQC1bUPDqPQLP7eFOW861K4wk9Vh8NsNPN zXjJ5bypsM4EfdzqzUmazzUt1tMXqiysExAibwJ8x/hM+I5fliUnmHH2YZLSnL+YAMA3 EUcy2TZ5CXrZpG7pE6IX9GmnTaRKQfJTsbSMvmkAwJBz+ety4T76vZTjsowzaGkuueDA RQPwqoY4jvebjKojJZXFy96s821GZft4w4DG/f+GoT6fEpo/HXh1y3b+AfI7fKZrFFcK m5HW4oFa+LGysHyKfw2LOsc343PH5IjllXr7ASDwmJBjSe+Kc83FOzGmUR0WZ5rem8Av oF3g== X-Google-DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=1e100.net; s=20251104; t=1778532084; x=1779136884; h=date:message-id:subject:from:to:sender:x-gm-gg:x-gm-message-state :from:to:cc:subject:date:message-id:reply-to; bh=GJbdjIzUwAitao9vaU2j4FuYFwAWS0FDe62Kzu2cnGs=; b=X/oZZyebStHWm0Y2lmcZXPzPYXiR8ZEOvPPKSr6wPHSwOKAPGgqmi02z+qCoJQJzB4 Syu2UrgOmo+0TMxyRUjOh91eibWtBpRvo+HXk1e/Ogo1aej6fwLN5C6L7wrI9Tpzgydg MjI7IZgoEOnc6VYDlNGNvUuA/JRa9UDjHsJq0tdwxODRHaWlyLMIfd/o7RQ86wHiUyW3 S2MY8nURWJ/AMXhKmwF7BdGzihsj2KZCX8FgHMT9cMm8Jj2gs1PZ1kuDtBbxOeD/sPG3 CJs1qwrxebOWwVFMv+zVFsslFTOfCZNtKgkXeWT9NkHHvIw0pHMvuXRK4oRlYjGJZFvc z+Xw== X-Gm-Message-State: AOJu0YxomWIsjYCpjZm77RDcWMpnLPpTWWnYW5FcwxCO4IT14a9/EvnU 2Im2fMnjFkWqMA+yQVECQghy7G6RI/YxEhrQtrvl3L2zm44XVhOoEZqzhcqp1A== X-Gm-Gg: Acq92OF6a+EMU+W0GvZ25MDhhXPLPuk9CIIE17cZHmpdXPkz6A4JQt6MjWnfehTkBgx rP3k8ZquX3QU4xX7o8iCjmgISui7kM4sM8jdmHlOaNZYgtLWqf7iEObn1hRSLM+pU6lyIPhE/7Z ah/NaEo73d8woUfzD5N1joe42ZPdX39lNEMNfT4VN2GDzoTLAPbdUT/dATxto5YaohyNv7RkOsL 2rPS8IaizDM3RbuRFEmKHIjz/Rd3VfeaZhKtsTjN1QiHRaLVXPD5BMPKF/GYQGjtSirur56I1Pi rOohwf1HN+ZybK6VDr157EZodic5m3eexUJIbtMXn6QIdeY2TFGYpQg/l33exurPU1r/molTMxk ru6lH7gFq4jTtosp8TOswftz9X60GaAB4FrNX1n77H9MrNjANQDQoqEQtZVvSruyKN5qknMQFri ZycxiDirPjsIYOU9Jc+s2O0xVECPiAsahh2kJ6IDg3+KfnQqSCyPk= X-Received: by 2002:a05:600c:8b77:b0:48e:8741:fd42 with SMTP id 5b1f17b1804b1-48e8fe59c3amr1800835e9.12.1778532084167; Mon, 11 May 2026 13:41:24 -0700 (PDT) Received: from MacBook-Air-von-Anton.local ([2a01:239:200:7f00::1]) by smtp.gmail.com with ESMTPSA id 5b1f17b1804b1-48e8f3f5174sm3225245e9.5.2026.05.11.13.41.22 for <maintonly@bugs.debian.org> (version=TLS1_3 cipher=TLS_CHACHA20_POLY1305_SHA256 bits=256/256); Mon, 11 May 2026 13:41:23 -0700 (PDT) Sender: Anton Gladky <gladky.anton@gmail.com> Received: by MacBook-Air-von-Anton.local (Postfix, from userid 501) id CB9BDBE6A79; Mon, 11 May 2026 22:41:21 +0200 (CEST) To: maintonly@bugs.debian.org From: Anton Gladky <gladk@debian.org> Subject: qtltools: FTBFS with libeigen3-dev 5.0 (major version transition) Message-Id: <20260511204121.CB9BDBE6A79@MacBook-Air-von-Anton.local> Date: Mon, 11 May 2026 22:41:21 +0200 (CEST) Delivered-To: maintonly@bugs.debian.org -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Package: src:qtltools Version: 1.3.1+dfsg-4 Severity: important Tags: sid forky ftbfs User: debian-devel@lists.debian.org Usertags: eigen3-5.0 Dear Maintainer, your package depends on libeigen3-dev. The upstream released a new major version of this mathematical library, 5.0.0. Some basic information about new features and changes in this version can be found here: https://libeigen.gitlab.io/releases/5.0/ This is a major version change and may require code changes in packages depending on eigen3. The key breaking changes include: - Minimum required C++ standard is now C++14 - Changes in the build system integration - Some API name changes qtltools FTBFS with libeigen3-dev 5.0.1. The full build log is available at: https://debusine.debian.net/debian/developers-gladk-eigen3/artifact/3761106/raw/qtltools_1.3.1+dfsg-4_amd64-2026-05-08T16:04:53Z.build Here is the most probably relevant part of the failing build log: =========================================== g++ -std=c++0x -o obj/data.o -c src/common/data.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_main.o -c src/mode_ase/ase_main.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib g++ -std=c++0x -o obj/ase_management.o -c src/mode_ase/ase_management.cpp -O3 -Wall -Wextra -Wno-sign-compare -Wno-unused-local-typedefs -Wno-deprecated -Wno-unused-parameter -g -O2 -ffile-prefix-map=/build/reproducible-path/qtltools-1.3.1+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/eigen3 -Ilib/OTools -Ilib In file included from /usr/include/eigen3/Eigen/Core:22, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_management.cpp:16: /usr/include/eigen3/Eigen/src/Core/util/Macros.h:749:2: error: #error Eigen requires at least c++14 support. 749 | #error Eigen requires at least c++14 support. | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:22, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60, from src/common/data.h:19, from src/common/data.cpp:16: /usr/include/eigen3/Eigen/src/Core/util/Macros.h:749:2: error: #error Eigen requires at least c++14 support. 749 | #error Eigen requires at least c++14 support. | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:22, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60, from src/mode_ase/../common/data.h:19, from src/mode_ase/ase_data.h:20, from src/mode_ase/ase_main.cpp:16: /usr/include/eigen3/Eigen/src/Core/util/Macros.h:749:2: error: #error Eigen requires at least c++14 support. 749 | #error Eigen requires at least c++14 support. | ^~~~~ In file included from /usr/include/eigen3/Eigen/Core:22, from /usr/include/eigen3/Eigen/Dense:1, from lib/OTools/residualizer.h:36, from lib/OTools/otools.h:60, from src/mode_cis/../common/data.h:19, from src/mode_cis/cis_data.h:33, from src/QTLtools.cpp:16: =========================================== libeigen3-dev_5.0.1-1 is available in experimental. When this package version lands into unstable (probably at the beginning of June 2026), this bug will be increased in severity to serious. Thanks, Anton -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEu71F6oGKuG/2fnKF0+Fzg8+n/wYFAmoCPvEACgkQ0+Fzg8+n /wZpzA//epb1SgbyFKkVlVYEzR8sU/a9qG0i2fcDILp/qifvcEiyoKL/PKNTUixC rxCnV7YbLfCDH+ec6f7iv+8VRNtBtEJhzEw0TkSUFFbY7x+HbhKlookmaQXaKu6u Jd1gJM9dj8lsRBNCRempG5f8X/MfR42DCQlr/s1zMwT0oc0nHFbkRpnRYsmxlL4S VT5tQKuUdzHTwfBV1blKeeWwEmJADnGzEdNF5YOHYCKmWJLyi6IzlmcakAcMyxiS m37f718MuCEWEfonS0Xg/SuQqRj4+1u5YJuTN9nafsx9uhCMADBeNiRY2hIkSmTq RqdJY6z2IC01Y29EyWUKPc9WVe248YeAnEjeTFkDr0aONL0wN59N12EHXyiH9SMB vvdLx82cNL6xz8h5RCaaT6hAGXTggkXnBNgHXtWMQDiFQf6avQUyxJoG18KrMwQv ZUtYyBPGzmak/625r82/XmdIpbaVCdHj3G3DUomhYVKW9kNeoyPYibPRGKCYtJrG zf6NwaiwsvwJV1nGhE+7MfeUu48zqrffsMtN6UaokFgLjzowL8ziisPQrEF1JAkg DKGaqA4RIXC/+kxn3sVk6/QuvT937bPaQykHJxEux3LnaEZ+a6wbRZat2f4O0T2b 2zFcHZg2bqDhQtDBo9DQJ4IQsno4Hm9svKfVUgQsWDA1sDFCNgA= =4ENe -----END PGP SIGNATURE----- ]