[From nobody Mon Jun 15 16:51:04 2026 Received: (at submit) by bugs.debian.org; 10 Jun 2026 08:32:31 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-10.6 required=4.0 tests=BAYES_00,FOURLA, FROMDEVELOPER,FVGT_m_MULTI_ODD,HEADER_FROM_DIFFERENT_DOMAINS, PGPSIGNATURE,SPF_HELO_NONE,SPF_PASS autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 56; hammy, 150; neutral, 163; spammy, 0. spammytokens: hammytokens:0.000-+--HTo:N*Debian, 0.000-+--H*Ad:N*Bug, 0.000-+--H*Ad:N*Tracking, 0.000-+--sk:taint_o, 0.000-+--sk:TAINT_O Return-path: <SRS0=a6bP=EG=debian.org=pini@bou-fi.net> Received: from mail.bou-fi.net ([51.255.91.82]:47650) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_X25519__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <SRS0=a6bP=EG=debian.org=pini@bou-fi.net>) id 1wXEMR-00ETA9-1P for submit@bugs.debian.org; Wed, 10 Jun 2026 08:32:31 +0000 Content-Type: multipart/mixed; boundary="===============1403378997214997036==" Authentication-Results: mail.bou-fi.net; auth=pass smtp.mailfrom=pini@debian.org MIME-Version: 1.0 From: Gilles Filippini <pini@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: mapsembler2: FTBFS against HDF5 2.1.0 Message-ID: <178108034818.58796.10399785643921261849.reportbug@pinibrem14> Date: Wed, 10 Jun 2026 10:32:28 +0200 X-Spamd-Bar: -- Delivered-To: submit@bugs.debian.org This is a multi-part MIME message sent by reportbug. --===============1403378997214997036== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: inline Source: mapsembler2 Version: 2.2.4+dfsg1-6 Severity: important Tags: ftbfs patch -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Hi, During a test rebuild of HDF5's reverse dependencies against HDF5 2.1.0 currently in experimental, mapsembler2 FTBFS because its build toolchain doesn't support this new major release. The attached patch is a workaround for this issue and supports both HDF5 1.14.6 in unstable and HDF5 2.1.0 in experimental. Best, _g. - -- System Information: Debian Release: 12.0 Architecture: amd64 (x86_64) Kernel: Linux 6.1.0-44-amd64 (SMP w/12 CPU threads; PREEMPT) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled -----BEGIN PGP SIGNATURE----- iQEzBAEBCgAdFiEEoJObzArDE05WtIyR7+hsbH/+z4MFAmopIRQACgkQ7+hsbH/+ z4MuBAf+K9jwcou1vhvX3FjQBqAtOeCbUEbnhs28rmU61/6/1Wh7rYuHs42qsIPT bTUhs4n8n+FcuOPavtBWX9FGbOyuYr2ORT/lTGkOEuEXMdA60IRk/I81m7wSral8 75YZxZrSV1YdjjOzyrx+sjy6M9xuDp7UJSPrL9Gt7r/EK1BwypQoHKqeIlRmq6bM lZCc06mwYUGOWtkkGZEwfyKMexiR/J/m0SWlVfJlfdIO6/z/VqaKfSCInVUYo98D lJRUHdd/0HPJd0VvbdmyTiDn6ujcJ5ct07jQiShl5dTvhbDUMlt33KI5pxUONxu2 UHZIlGHUf9dVD9uQFaO/zQSj6tU7bw== =/7El -----END PGP SIGNATURE----- --===============1403378997214997036== Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit Content-Disposition: attachment; filename="mapsembler2.debdiff" diff -Nru mapsembler2-2.2.4+dfsg1/debian/changelog mapsembler2-2.2.4+dfsg1/debian/changelog --- mapsembler2-2.2.4+dfsg1/debian/changelog 2026-04-28 14:51:08.000000000 +0200 +++ mapsembler2-2.2.4+dfsg1/debian/changelog 2026-06-01 17:29:09.000000000 +0200 @@ -1,3 +1,10 @@ +mapsembler2 (2.2.4+dfsg1-6.1) UNRELEASED; urgency=medium + + * Non-maintainer upload. + * Fix FTBFS against HDF5 2.1.0 + + -- Gilles Filippini <pini@debian.org> Mon, 01 Jun 2026 17:29:09 +0200 + mapsembler2 (2.2.4+dfsg1-6) unstable; urgency=medium * Fix build with CMake 4 diff -Nru mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch --- mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch 1970-01-01 01:00:00.000000000 +0100 +++ mapsembler2-2.2.4+dfsg1/debian/patches/hdf5-2.1.0.patch 2026-06-01 17:29:09.000000000 +0200 @@ -0,0 +1,12 @@ +Index: mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt +=================================================================== +--- mapsembler2-2.2.4+dfsg1.orig/mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt ++++ mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/CMakeLists.txt +@@ -221,7 +221,6 @@ ADD_SUBDIRECTORY(thirdparty) + find_package (HDF5 REQUIRED) + if (HDF5_FOUND) + include_directories (${HDF5_INCLUDE_DIRS}) +- set (gatb-core-libraries ${gatb-core-libraries} ${HDF5_LIBRARIES}) + set (gatb-core-libraries ${gatb-core-libraries} PARENT_SCOPE) + endif() + diff -Nru mapsembler2-2.2.4+dfsg1/debian/patches/series mapsembler2-2.2.4+dfsg1/debian/patches/series --- mapsembler2-2.2.4+dfsg1/debian/patches/series 2026-04-28 14:51:08.000000000 +0200 +++ mapsembler2-2.2.4+dfsg1/debian/patches/series 2026-06-01 17:29:09.000000000 +0200 @@ -11,3 +11,4 @@ cross.patch gcc11.patch cmake4.patch +hdf5-2.1.0.patch --===============1403378997214997036==-- ]