[From nobody Wed Jul 1 23:21:07 2026 Received: (at submit) by bugs.debian.org; 29 Jun 2026 09:04:48 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-111.5 required=4.0 tests=ALL_TRUSTED,BAYES_00, DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF, FOURLA,FROMDEVELOPER,SPF_HELO_NONE,SPF_PASS,USER_IN_DKIM_WELCOMELIST, XMAILER_REPORTBUG autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 49; hammy, 150; neutral, 104; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <wrar@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:50436) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <wrar@debian.org>) id 1we7v6-001fcM-0T for submit@bugs.debian.org; Mon, 29 Jun 2026 09:04:48 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Date:Message-ID:Subject:To:From: Content-Transfer-Encoding:MIME-Version:Content-Type:Reply-To:Cc:Content-ID: Content-Description:In-Reply-To:References; bh=IV1++ceZVTo3zyVX9SI4Q3+3BtQPpvceAnEc81BKvFk=; b=tbSlNTrAMnM9HYgtiw9d1lFpb/ mM5UikXWbVDnYBOObpvRiyblbtb2UGvIFCfFbuj7ehxbbbUSnR6iqSwzGJtFPq+IdMEshDbzidIAl V7C3nxcBujKmAxhuKxSOlpMu60Mv350Jz8zwTKXPOFlQM6+5A4wsHyVGMXq+UjV9Ht0wVQ9ECPg14 lXdjwInBhZloHKslBWTiTw+ydg//rDgKmybTmYqjUawqBzCa7QHnxooIyRfD0QMIfbMjMF179ekmw iVkcH1xAXNsXoadgmhSuMxQYNO9hayUYGtzUnJiWxIMHpLjLMT0+V5YYfWSZ3NV4QeWmic2WuxhPZ C5dRUJiQ==; Received: from authenticated-user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <wrar@debian.org>) id 1we7v4-006BEA-1I; Mon, 29 Jun 2026 09:04:46 +0000 Received: from [188.226.55.174] (helo=belkar.localdomain) by durkon.wrar.name with esmtpsa (TLS1.3) tls TLS_ECDHE_RSA_WITH_AES_256_GCM_SHA384 (Exim 4.99.4) (envelope-from <wrar@debian.org>) id 1we7v3-000000065tr-2hr6; Mon, 29 Jun 2026 11:04:45 +0200 Received: by belkar.localdomain (Postfix, from userid 1000) id D550D6A39203; Mon, 29 Jun 2026 14:04:44 +0500 (+05) Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit From: Andrey Rakhmatullin <wrar@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: snakemake: FTBFS: KeyError Message-ID: <178272388485.3561680.11505699919201070823.reportbug@belkar.wrar.name> X-Mailer: reportbug 13.2.0+nmu1 Date: Mon, 29 Jun 2026 14:04:44 +0500 X-Debian-User: wrar Delivered-To: submit@bugs.debian.org Source: snakemake Version: 7.32.4-11 Severity: serious Tags: ftbfs _______________________________ test_config_ref ________________________________ self = <jsonschema.validators._RefResolver object at 0x7f39ef516710> url = 'file:/tmp/pytest-of- wrar/pytest-0/test_config_ref0/schema/bar.schema.yaml' def resolve_from_url(self, url): """ Resolve the given URL. """ url, fragment = urldefrag(url) if not url: url = self.base_uri try: > document = self.store[url] ^^^^^^^^^^^^^^^ /usr/lib/python3/dist-packages/jsonschema/validators.py:1118: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = {'http://json-schema.org/draft-06/schema': {'$schema': 'http://json- schema.org/draft-06/schema#', '$id': 'http://json-...ult': 'json', '$ref': '/tmp/pytest-of- wrar/pytest-0/test_config_ref0/schema/bar.schema.json#/definitions/jsonbar'}}}}}} uri = 'file:/tmp/pytest-of- wrar/pytest-0/test_config_ref0/schema/bar.schema.yaml' def __getitem__(self, uri): > return self.store[self.normalize(uri)] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ E KeyError: 'file:///tmp/pytest-of- wrar/pytest-0/test_config_ref0/schema/bar.schema.yaml' There is some output in the earlier log that looks like a crash log so it's possible that some binary modules are the real cause. -- System Information: Debian Release: forky/sid APT prefers unstable-debug APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'), (101, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 7.0.12+deb14.1-amd64 (SMP w/16 CPU threads; PREEMPT) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled ]