[From nobody Sun Jul 5 22:37:05 2026 Received: (at submit) by bugs.debian.org; 30 Jun 2026 17:45:56 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-122.5 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FROMDEVELOPER,HAS_PACKAGE, SPF_HELO_NONE,SPF_PASS,USER_IN_DKIM_WELCOMELIST,XMAILER_REPORTBUG autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 48; hammy, 150; neutral, 225; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <wrar@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:35394) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <wrar@debian.org>) id 1wecWy-006ifl-0R for submit@bugs.debian.org; 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Tue, 30 Jun 2026 19:45:54 +0200 Received: by belkar.localdomain (Postfix, from userid 1000) id 18AB86A39203; Tue, 30 Jun 2026 22:45:53 +0500 (+05) Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit From: Andrey Rakhmatullin <wrar@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: ariba: Autopkgtests fail: The following reads file(s) were not found Message-ID: <178284155308.510639.17577121055961012459.reportbug@belkar.wrar.name> X-Mailer: reportbug 13.2.0+nmu1 Date: Tue, 30 Jun 2026 22:45:53 +0500 X-Debian-User: wrar Delivered-To: submit@bugs.debian.org Package: ariba Version: 2.14.7+ds-12 Severity: serious ___________________________ Assembling each cluster ___________________________ Will run 1 cluster(s) in parallel Not constructing cluster cluster because it only has 2 reads (1 of 9) Constructing cluster cluster_1 (2 of 9) Constructing cluster cluster_2 (3 of 9) Constructing cluster cluster_3 (4 of 9) Constructing cluster cluster_4 (5 of 9) Constructing cluster gene (6 of 9) Constructing cluster gene_1 (7 of 9) Constructing cluster noncoding (8 of 9) Constructing cluster noncoding_1 (9 of 9) The following reads file(s) were not found: reads_1.fq reads_2.fq Cannot continue Traceback (most recent call last): File "/usr/bin/ariba", line 312, in <module> args.func(args) ~~~~~~~~~^^^^^^ File "/usr/lib/python3/dist-packages/ariba/tasks/run.py", line 65, in run c.run() ~~~~~^^ File "/usr/lib/python3/dist-packages/ariba/clusters.py", line 612, in run self._run() ~~~~~~~~~^^ File "/usr/lib/python3/dist-packages/ariba/clusters.py", line 637, in _run self._init_and_run_clusters() ~~~~~~~~~~~~~~~~~~~~~~~~~~~^^ File "/usr/lib/python3/dist-packages/ariba/clusters.py", line 465, in _init_and_run_clusters manager = multiprocessing.Manager() File "/usr/lib/python3.14/multiprocessing/context.py", line 57, in Manager m.start() ~~~~~~~^^ File "/usr/lib/python3.14/multiprocessing/managers.py", line 566, in start self._process.start() ~~~~~~~~~~~~~~~~~~~^^ File "/usr/lib/python3.14/multiprocessing/process.py", line 121, in start self._popen = self._Popen(self) ~~~~~~~~~~~^^^^^^ File "/usr/lib/python3.14/multiprocessing/context.py", line 306, in _Popen return Popen(process_obj) File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 35, in __init__ super().__init__(process_obj) ~~~~~~~~~~~~~~~~^^^^^^^^^^^^^ File "/usr/lib/python3.14/multiprocessing/popen_fork.py", line 20, in __init__ self._launch(process_obj) ~~~~~~~~~~~~^^^^^^^^^^^^^ File "/usr/lib/python3.14/multiprocessing/popen_forkserver.py", line 51, in _launch self.sentinel, w = forkserver.connect_to_new_process(self._fds) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^ File "/usr/lib/python3.14/multiprocessing/forkserver.py", line 106, in connect_to_new_process connection.answer_challenge( ~~~~~~~~~~~~~~~~~~~~~~~~~~~^ wrapped_client, self._forkserver_authkey) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3.14/multiprocessing/connection.py", line 995, in answer_challenge message = connection.recv_bytes(256) # reject large message File "/usr/lib/python3.14/multiprocessing/connection.py", line 226, in recv_bytes buf = self._recv_bytes(maxlength) File "/usr/lib/python3.14/multiprocessing/connection.py", line 451, in _recv_bytes buf = self._recv(4) File "/usr/lib/python3.14/multiprocessing/connection.py", line 416, in _recv chunk = read(handle, to_read) ConnectionResetError: [Errno 104] Connection reset by peer -- System Information: Debian Release: forky/sid APT prefers unstable-debug APT policy: (500, 'unstable-debug'), (500, 'unstable'), (500, 'testing'), (101, 'experimental') Architecture: amd64 (x86_64) Foreign Architectures: i386 Kernel: Linux 7.0.13+deb14-amd64 (SMP w/16 CPU threads; PREEMPT) Kernel taint flags: TAINT_OOT_MODULE, TAINT_UNSIGNED_MODULE Locale: LANG=ru_RU.UTF-8, LC_CTYPE=ru_RU.UTF-8 (charmap=UTF-8), LANGUAGE not set Shell: /bin/sh linked to /usr/bin/dash Init: systemd (via /run/systemd/system) LSM: AppArmor: enabled Versions of packages ariba depends on: pn bowtie2 <none> pn cd-hit <none> pn fastaq <none> ii libc6 2.42-17 pn libfml0 <none> ii libgcc-s1 16.1.0-2 pn libminimap0 <none> ii libstdc++6 16.1.0-2 pn mash <none> pn mummer <none> ii python3 3.13.9-3+b1 pn python3-biopython <none> ii python3-bs4 4.15.0-1 pn python3-dendropy <none> ii python3-matplotlib 3.10.7+dfsg1-5 pn python3-pymummer <none> pn python3-pysam <none> ii python3-tk 3.14.6-1 ii zlib1g 1:1.3.dfsg+really1.3.2-3 ariba recommends no packages. Versions of packages ariba suggests: pn spades <none> ]