[From nobody Fri Jul 17 22:07:05 2026 Received: (at submit) by bugs.debian.org; 9 Jul 2026 16:42:31 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-121.6 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER,HAS_PACKAGE, PP_MIME_FAKE_ASCII_TEXT,SPF_HELO_PASS,SPF_PASS, USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 52; hammy, 150; neutral, 173; spammy, 0. spammytokens: hammytokens:0.000-+--python3, 0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--HTo:N*Debian, 0.000-+--forky Return-path: <sanvila@debian.org> Received: from mailly.debian.org ([2001:41b8:202:deb:6564:a62:52c3:4b72]:55330) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1whrpX-00HHZY-2P for submit@bugs.debian.org; Thu, 09 Jul 2026 16:42:31 +0000 Received: via submission from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by mailly.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1whrpV-005LWk-2f for submit@bugs.debian.org; Thu, 09 Jul 2026 16:42:30 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Subject:To:From:Reply-To:Cc: MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=V6EqXSC/ydWomS1gDk1RENk9kBbd0stRGm8uvgw5RxA=; b=ZYS6itQ1+72IadxBjEgXJlOST7 OMSzGMT0NnWISLCsYJcG8L14IddUtVKEdGn7d2VEs4WqgWv1QXBMBO6AW+d6RL3PPZTzWbacY1XDc 1Qo86zz3cg+JYGoJ8vFCzTPtGoxjsrv5ZbIJoI5cwp0ZUoQtx2X0GFP+9q3RBRm5Hkfu8Du77dPSl wBZbQqSqO4qI1XktYY0SHz0gEds36SevjPAuHGKpXEpd2pOZLKsBmEnzAENpdF0QZ88OPe4QdQVCx X5MyChsHI0xbuc10sCs30cODlcsYPT8PPOsKYw4WCRA5f+yWKD9oMM8/iOvsDtCW0kWr6D7rYTQlu fVmbpYVA==; Received: from sanvila by paradis.debian.org with local (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1whrpV-004hiQ-00 for submit@bugs.debian.org; Thu, 09 Jul 2026 16:42:29 +0000 From: Santiago Vila <sanvila@debian.org> To: Debian BTS <submit@bugs.debian.org> Subject: unifrac-tools: FTBFS with the nocheck build profile X-Debbugs-Cc: sanvila@debian.org Message-Id: <E1whrpV-004hiQ-00@paradis.debian.org> Date: Thu, 09 Jul 2026 16:42:29 +0000 Delivered-To: submit@bugs.debian.org Package: src:unifrac-tools Version: 1.6.1-1 Severity: serious Tags: forky sid ftbfs User: debian-qa@lists.debian.org Usertags: ftbfs-nocheck-profile Dear maintainer: During a rebuild of all packages in unstable using the nocheck build profile, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202607/ A wiki page discussing how to reproduce bugs in this category and possible solutions is available here: https://wiki.debian.org/qa.debian.org/FTBFS/nocheck About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:unifrac-tools, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] make api_cpu_basic make[5]: Entering directory '/<<PKGBUILDDIR>>' export BUILD_VARIANT=cpu_basic ; export BUILD_FULL_OPTIMIZATION=False ; cd src && make clean && make api make[6]: Entering directory '/<<PKGBUILDDIR>>/src' rm -f *.o ssu_cpu_basic faithpd_cpu_basic *.a test_su test_ska test_api test_su_api libssu_cpu_basic.so unifrac_task_noclass_*.cpp unifrac_task_api_*.h unifrac_task.cpp make[6]: Leaving directory '/<<PKGBUILDDIR>>/src' make[6]: Entering directory '/<<PKGBUILDDIR>>/src' h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c tree.cpp -o tree.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom.cpp -o biom.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom_inmem.cpp -o biom_inmem.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c biom_subsampled.cpp -o biom_subsampled.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c tsv.cpp -o tsv.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c unifrac.cpp -o unifrac.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c cmd.cpp -o cmd.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c skbio_alt.cpp -o skbio_alt.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib api.cpp -c -o api.o -fPIC cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ h5c++ -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -DUNIFRAC_ENABLE_ACC_NV=1 -DUNIFRAC_ENABLE_ACC_AMD=1 -Wall -std=c++17 -pedantic -I. -O3 -fPIC -L/<<PKGBUILDDIR>>/debian/tmp/usr/lib -c unifrac_internal.cpp -o unifrac_internal.o cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ python3 generate_unifrac_task_noclass.py cpu direct > unifrac_task_noclass_cpu.cpp /bin/sh: 1: python3: not found make[6]: *** [Makefile:189: unifrac_task_noclass_cpu.cpp] Error 127 make[6]: Leaving directory '/<<PKGBUILDDIR>>/src' make[5]: *** [Makefile:139: api_cpu_basic] Error 2 make[5]: Leaving directory '/<<PKGBUILDDIR>>' make[4]: *** [Makefile:62: all_cpu_basic] Error 2 make[4]: Leaving directory '/<<PKGBUILDDIR>>' make[3]: *** [Makefile:39: all_cpu] Error 2 make[3]: Leaving directory '/<<PKGBUILDDIR>>' make[2]: *** [Makefile:28: all] Error 2 make[2]: Leaving directory '/<<PKGBUILDDIR>>' dh_auto_build: error: make -j1 INSTALL="install --strip-program=true" PREFIX=/<<PKGBUILDDIR>>/debian/tmp/usr returned exit code 2 make[1]: *** [debian/rules:15: override_dh_auto_build] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:10: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]