[From nobody Thu Aug 13 19:12:31 2026 Received: (at submit) by bugs.debian.org; 4 Nov 2025 19:02:20 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-5.8 required=4.0 tests=BAYES_00,DKIM_SIGNED, DKIM_VALID,FROMDEVELOPER,RCVD_IN_DNSWL_LOW,SPF_HELO_PASS,SPF_NONE autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 30; hammy, 150; neutral, 34; spammy, 0. spammytokens: hammytokens:0.000-+--XDebbugsCc, 0.000-+--X-Debbugs-Cc, 0.000-+--HX-ME-Sender:xms, 0.000-+--U*lamby, 0.000-+--sk:lambyd Return-path: <lamby@debian.org> Received: from fout-b6-smtp.messagingengine.com ([202.12.124.149]:48103) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_X25519__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <lamby@debian.org>) id 1vGMIN-003meE-0J for submit@bugs.debian.org; Tue, 04 Nov 2025 19:02:20 +0000 Received: from phl-compute-08.internal (phl-compute-08.internal [10.202.2.48]) by mailfout.stl.internal (Postfix) with ESMTP id 14E2B1D0013B for <submit@bugs.debian.org>; Tue, 4 Nov 2025 14:02:19 -0500 (EST) Received: from phl-imap-18 ([10.202.2.89]) by phl-compute-08.internal (MEProxy); Tue, 04 Nov 2025 14:02:19 -0500 DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d= messagingengine.com; h=cc:content-type:content-type:date:date :feedback-id:feedback-id:from:from:in-reply-to:message-id :mime-version:reply-to:subject:subject:to:to:x-me-proxy :x-me-sender:x-me-sender:x-sasl-enc; s=fm3; t=1762282938; x= 1762369338; bh=nIxzjWgQKzZ1Tt/47A4WH58FxEKowT98Sjn0FY8vdeY=; b=K eeRwb6kOyglxsEPC1Oz5fBpQY+FhIeLArgc12sWctIR4oLLUw4bxOGr3lNA98tfC M/+bLjcj+YyTmR1tQnxz+0YdI82e8oAKJN1V9TvWi61X1KFPdUytt3tnk63m6Tif uVamtfPIQU2aBjKOKMFt5jLbuyC4Ph4lCNgscdBYoyhXdkcBsejIc/R8bdsCLno2 yLXrt4wY23UIe4D/tIH5Ahks2F+nA+icI6J0DB5pi2c/IU9rxLRZAQFEh/gyBdM7 53ExnncO+F03hQTbYlwg7XQu4WUpQ2gdoxn0v4Y6Sc5+0dTAFSgKTB6u2BHoh+F+ OhDeHKUmLZ6n5n9NXn8gw== X-ME-Sender: <xms:uk0KaXAtMncVW70Z544coNogglG7vPpprEvt47t6gOvESNff-isEow> <xme:uk0KaYXM_rO0vwb1S-YebzcYZksT0eKLjDfgzwfqomo9AtpLmP1xMGlQRmXPbRVYq r_Vcf_OoET1PFe8DZtcyx-54rpExU0diOA79aD_3AJaJaNX1A> X-ME-Proxy-Cause: gggruggvucftvghtrhhoucdtuddrgeeffedrtdeggddukedukeduucetufdoteggodetrf dotffvucfrrhhofhhilhgvmecuhfgrshhtofgrihhlpdfurfetoffkrfgpnffqhgenuceu rghilhhouhhtmecufedttdenucenucfjughrpefoggffhffvkffutgesmhdtreerredttd enucfhrhhomhepfdevhhhrihhsucfnrghmsgdfuceolhgrmhgshiesuggvsghirghnrdho rhhgqeenucggtffrrghtthgvrhhnpeffjeejjeelhffhleetueeludejvdffgeehieeuhf efkefgkeehgfefieegveelieenucffohhmrghinheprhgvphhrohguuhgtihgslhgvqdgs uhhilhgushdrohhrghenucevlhhushhtvghrufhiiigvpedtnecurfgrrhgrmhepmhgrih hlfhhrohhmpehlrghmsgihseguvggsihgrnhdrohhrghdpnhgspghrtghpthhtohepuddp mhhouggvpehsmhhtphhouhhtpdhrtghpthhtohepshhusghmihhtsegsuhhgshdruggvsg hirghnrdhorhhg X-ME-Proxy: <xmx:uk0KacSRBJr0fai-PELPv9OWByyZKj_GDaoxCh8diVFzJjxdPwj6Xg> <xmx:uk0KaZupDXAR8DWCXg8P4rGuic0LrNidipbDrlVB4yO8CMoL2ydYHg> <xmx:uk0KaWtuO2LnHVNmbGiMofv-2YREjYGKCEYMU9oefpJ9K-Pgn8OLXg> <xmx:uk0KaXwS0Y4bDz0KGEuveCiu3aowjZhysRRPE0vhNRFhQni61ONJZg> <xmx:uk0Kad8aZBlSvbKxyq1NaNbfvdS_RCQDVAJqjAr24oJ3CvZwsZAVzyj4> Feedback-ID: i1f084090:Fastmail Received: by mailuser.phl.internal (Postfix, from userid 501) id 8C89C15C0080; Tue, 4 Nov 2025 14:02:18 -0500 (EST) X-Mailer: MessagingEngine.com Webmail Interface MIME-Version: 1.0 X-ThreadId: AaOV7szQBHFw Date: Tue, 04 Nov 2025 11:01:57 -0800 From: "Chris Lamb" <lamby@debian.org> To: submit@bugs.debian.org Message-Id: <176228280369.6007.18233019286800262333@dbf79eec0aad> Subject: python-biom-format: please make the build reproducible Content-Type: multipart/mixed; boundary=74a7b4d7662f408da98b5605157a254b Delivered-To: submit@bugs.debian.org --74a7b4d7662f408da98b5605157a254b Content-Type: text/plain Content-Transfer-Encoding: 7bit Source: python-biom-format Version: 2.1.16-1 Severity: wishlist Tags: patch User: reproducible-builds@lists.alioth.debian.org Usertags: nocheck X-Debbugs-Cc: reproducible-bugs@lists.alioth.debian.org Hi, Whilst working on the Reproducible Builds effort [0], we noticed that python-biom-format could not be built reproducibly. This is because it generates different content whether the tests are run, and, relatedly, it installs an "examples/" directory directly under dist-packages. I believe it is this line that is the 'cause': export PYBUILD_BEFORE_TEST=cp -r {dir}/examples {build_dir} ... and a patch is attached that cleans up with: export PYBUILD_AFTER_TEST=rm -rf {build_dir}/examples [0] https://reproducible-builds.org/ Regards, -- ,''`. : :' : Chris Lamb `. `'` lamby@debian.org / chris-lamb.co.uk `- --74a7b4d7662f408da98b5605157a254b Content-Disposition: attachment; filename="python-biom-format.diff.txt" Content-Type: text/plain; name="python-biom-format.diff.txt" Content-Transfer-Encoding: base64 LS0tIGEvZGViaWFuL3J1bGVzCTIwMjUtMTEtMDQgMTA6NTM6MDAuMzQ5Nzg3Njc2IC0wODAw Ci0tLSBiL2RlYmlhbi9ydWxlcwkyMDI1LTExLTA0IDEwOjU5OjI0LjQ5ODc2NjI1NiAtMDgw MApAQCAtMTAsNiArMTAsNyBAQAogZXhwb3J0IGV4YW1wbGVwa2c9cHl0aG9uLSQoUFlCVUlM RF9OQU1FKS1leGFtcGxlcwogZXhwb3J0IFBZQlVJTERfQUZURVJfSU5TVEFMTF9weXRob24z PWRoX251bXB5MwogZXhwb3J0IFBZQlVJTERfQkVGT1JFX1RFU1Q9Y3AgLXIge2Rpcn0vZXhh bXBsZXMge2J1aWxkX2Rpcn0KK2V4cG9ydCBQWUJVSUxEX0FGVEVSX1RFU1Q9cm0gLXJmIHti dWlsZF9kaXJ9L2V4YW1wbGVzCiAKICMjIFdoZW4gdHJ5aW5nIGJldHRlciBoYXJkZW5pbmcg dGhlIGJ1aWxkIGZhaWxzCiAjIGV4cG9ydCBERUJfQlVJTERfTUFJTlRfT1BUSU9OUyA9IGhh cmRlbmluZz0rYWxsCg== --74a7b4d7662f408da98b5605157a254b-- ]