[From nobody Sun Aug 16 11:37:09 2026 Received: (at submit) by bugs.debian.org; 17 Feb 2026 12:02:27 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-109.2 required=4.0 tests=BAYES_00,DKIMWL_WL_HIGH, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER, SPF_HELO_NONE,SPF_NONE,UNPARSEABLE_RELAY,USER_IN_DKIM_WELCOMELIST, XMAILER_REPORTBUG autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 24; hammy, 115; neutral, 20; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <dparsons@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:34548) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <dparsons@debian.org>) id 1vsJmc-000C3M-2k for submit@bugs.debian.org; Tue, 17 Feb 2026 12:02:27 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Date:Message-ID:Subject:To:From: Content-Transfer-Encoding:MIME-Version:Content-Type:Reply-To:Cc:Content-ID: Content-Description:In-Reply-To:References; bh=gxn9g33g7IVXEi4DFQs58nKC2FlCUa/nVbfbAJ9eI8Q=; b=k4PCy44Y4i6Ibi7CQHNLZydwVw Q1D29NJlDPUYIMAcNbBmwz2+Y3Crw7eCkk4B5f1oIQ8yCPJlKHQUJ6PL+YrC6uAExcZYthSnogd1/ lNKF9g7LxFNClzOeIfvC1OitpW9b5+4Q290qbb7oLNY0XEuAryj0U1c7uIXcfx4iyc7M3OoKAILFn SM+rc7Vf3PGlaUMLKLfVsBXywHszk2yS4aOkiWTuKPv+6h9sMRH852V4wpfCKcsg9vaQhQO+Kki7F 5+gAaTKuS11biCNex3DfFk+W+GdMBkukFsmnzIwW/t9COw1FkaN9C2TSaY/ShR7EcS380TQ6ga5vm 8xb1YgcQ==; Received: from authenticated user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <dparsons@debian.org>) id 1vsJmc-004JAs-2E; Tue, 17 Feb 2026 12:02:24 +0000 Received: from drew by sandy with local (Exim 4.99.1) (envelope-from <dparsons@debian.org>) id 1vsJmZ-00000002VXo-0CsS; Tue, 17 Feb 2026 13:02:23 +0100 Content-Type: text/plain; charset="us-ascii" MIME-Version: 1.0 Content-Transfer-Encoding: 7bit From: Drew Parsons <dparsons@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: python-skbio: tests fail with scipy 1.17 Message-ID: <177132974301.597652.3954743027417049155.reportbug@sandy> X-Mailer: reportbug 13.2.0 Date: Tue, 17 Feb 2026 13:02:23 +0100 X-Debian-User: dparsons Delivered-To: submit@bugs.debian.org Source: python-skbio Version: 0.6.3-1 Severity: normal python-skbio is failing tests with scipy 1.17, currently available in experimental. 794s =========================== short test summary info ============================ 794s FAILED diversity/tests/test_driver.py::BetaDiversityTests::test_available_metrics 794s FAILED diversity/tests/test_driver.py::BetaDiversityTests::test_qualitative_bug_issue_1549 794s FAILED stats/distance/tests/test_permdisp.py::testPERMDISP::test_centroids_null 794s FAILED stats/tests/test_composition.py::AncomTests::test_ancom_no_signal - As... 794s ===== 4 failed, 3056 passed, 30 skipped, 76 warnings in 664.43s (0:11:04) ====== The error appears to be use of a deprecated API: 794s E ValueError: Unknown Distance Metric: sokalmichener python-skbio 0.7 has been released, does it fix the problem? ]