[From nobody Sat Sep 5 07:09:21 2026 Received: (at submit) by bugs.debian.org; 13 May 2025 19:03:19 +0000 X-Spam-Checker-Version: SpamAssassin 3.4.6-bugs.debian.org_2005_01_02 (2021-04-09) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-105.2 required=4.0 tests=BAYES_00,DKIMWL_WL_HIGH, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FOURLA, FROMDEVELOPER,MONEY,SPF_HELO_NONE,SPF_NONE,STOCKLIKE,UNPARSEABLE_RELAY, USER_IN_DKIM_WELCOMELIST,USER_IN_DKIM_WHITELIST autolearn=ham autolearn_force=no version=3.4.6-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 49; hammy, 150; neutral, 508; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <lucas@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:44128) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=stravinsky.debian.org, EMAIL=hostmaster@stravinsky.debian.org (verified) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <lucas@debian.org>) id 1uEuuM-006zce-Pf for submit@bugs.debian.org; Tue, 13 May 2025 19:03:19 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Content-Transfer-Encoding:Content-Type :MIME-Version:Message-ID:Subject:To:From:Date:Reply-To:Cc:Content-ID: Content-Description:In-Reply-To:References; bh=2edGfFq3pEjZHKvH6pSq/KIXKnDruUc/BQIlFzwQ6Ms=; b=FcemyXVUkU90vhaCw9Fx3NTK79 ZLuImsBgz85DNbAiRDLrexqtbJBXgMAhb357EmHht8vq4cXvys5RR2nDtG3C7XklpuS3PXkfZ0azC My7Pd3Nke6nTnNclikyrwJdf7i1aF5ugWJb9ALY4cqfERLpkBTdXQcS1We+9kdbTJjixLQppgACgQ WU6LF4TjgMdsHv1m2iOllIs/z1jwDB4cPpzOD3Pj3IP4xchvO9M2p5vC9AF6OfIAQkbRmVceUc0DG U2asa+sp7Px9mNc9/UU4e6H/34ll7zdK8unBDvo5jldFBeeO9I5e0esvyRs/egP7cZr84D11mKJe6 J9w5O71g==; Received: from authenticated user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <lucas@debian.org>) id 1uEuuK-00Apmy-Ue for submit@bugs.debian.org; Tue, 13 May 2025 19:03:17 +0000 Date: Tue, 13 May 2025 21:01:36 +0200 From: Lucas Nussbaum <lucas@debian.org> To: submit@bugs.debian.org Subject: ivar: FTBFS with make --shuffle=reverse: dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=-j1 --verbose" VERBOSE=1 returned exit code 2 Message-ID: <aCOXEIBHPCvaR1EA@grub.nussbaum.fr> MIME-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline Content-Transfer-Encoding: quoted-printable X-Debian-User: lucas Delivered-To: submit@bugs.debian.org Source: ivar Version: 1.4.4+dfsg-1 Severity: minor Tags: trixie sid ftbfs User: lucas@debian.org Usertags: ftbfs-shuffle Hi, GNU Make now has a --shuffle option that simulates non-deterministic orderi= ng of target prerequisites. See https://trofi.github.io/posts/238-new-make-shuffle-mode.html and also previ= ous work in Debian by Santiago Vila: https://people.debian.org/~sanvila/make-shuffle/ This package fails to build with make --shuffle=3Dreverse. This is likely to be caused by a missing dependency in debian/rules or an upstream Makefile. More information about this mass bug filing is available at https://wiki.debian.org/qa.debian.org/FTBFS/Shuffle Relevant part (hopefully): > make[5]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tes= ts' > Makefile:1268: update target 'check_strand_variants.log' due to: target d= oes not exist > p=3D'check_strand_variants'; \ > b=3D'check_strand_variants'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_strand_variants.log" in */*) am__odir= =3D`echo "./check_strand_variants.log" | sed 's|/[^/]*$||'`;; *) am__odir= =3D.;; esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/= mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif tes= t -f "$f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_str= and_variants.log'; if test -n ''; then am__collect_skipped_logs=3D'--collec= t-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; = then am__enable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; ca= se " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dye= s;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-na= me "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_strand_variants > Makefile:1261: update target 'check_quality_trim_unpaired.log' due to: ta= rget does not exist > p=3D'check_quality_trim_unpaired'; \ > b=3D'check_quality_trim_unpaired'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_quality_trim_unpaired.log" in */*) am_= _odir=3D`echo "./check_quality_trim_unpaired.log" | sed 's|/[^/]*$||'`;; *)= am__odir=3D.;; esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || = /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./;= elif test -f "$f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'= check_quality_trim_unpaired.log'; if test -n ''; then am__collect_skipped_l= ogs=3D'--collect-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; = if test -n ''; then am__enable_hard_errors=3Dno; else am__enable_hard_error= s=3Dyes; fi; case " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expe= ct_failure=3Dyes;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-d= river --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_quality_trim_unpaired > Makefile:1254: update target 'check_consensus_min_insert_threshold.log' d= ue to: target does not exist > p=3D'check_consensus_min_insert_threshold'; \ > b=3D'check_consensus_min_insert_threshold'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_consensus_min_insert_threshold.log" in= */*) am__odir=3D`echo "./check_consensus_min_insert_threshold.log" | sed '= s|/[^/]*$||'`;; *) am__odir=3D.;; esac; test "x$am__odir" =3D x"." || test = -d "$am__odir" || /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$= f"; then dir=3D./; elif test -f "$f"; then dir=3D; else dir=3D"./"; fi; tst= =3D$dir$f; log=3D'check_consensus_min_insert_threshold.log'; if test -n '';= then am__collect_skipped_logs=3D'--collect-skipped-logs no'; else am__coll= ect_skipped_logs=3D''; fi; if test -n ''; then am__enable_hard_errors=3Dno;= else am__enable_hard_errors=3Dyes; fi; case " " in *[\ \ ]$f[\ \ ]* | *[\= \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am__expect_failure=3Dno;; = esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_consensus_min_insert_threshold > Makefile:1247: update target 'check_amplicon_search.log' due to: target d= oes not exist > p=3D'check_amplicon_search'; \ > b=3D'check_amplicon_search'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_amplicon_search.log" in */*) am__odir= =3D`echo "./check_amplicon_search.log" | sed 's|/[^/]*$||'`;; *) am__odir= =3D.;; esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/= mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif tes= t -f "$f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_amp= licon_search.log'; if test -n ''; then am__collect_skipped_logs=3D'--collec= t-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; = then am__enable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; ca= se " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dye= s;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-na= me "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_amplicon_search > Makefile:1240: update target 'check_interval_tree.log' due to: target doe= s not exist > p=3D'check_interval_tree'; \ > b=3D'check_interval_tree'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_interval_tree.log" in */*) am__odir=3D= `echo "./check_interval_tree.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; = esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -= p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$= f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_interval_t= ree.log'; if test -n ''; then am__collect_skipped_logs=3D'--collect-skipped= -logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; then am__= enable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " i= n *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am= __expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_interval_tree > Makefile:1233: update target 'check_isize_trim.log' due to: target does n= ot exist > p=3D'check_isize_trim'; \ > b=3D'check_isize_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_isize_trim.log" in */*) am__odir=3D`ec= ho "./check_isize_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; esac; = test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p "$am= __odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"; th= en dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_isize_trim.log';= if test -n ''; then am__collect_skipped_logs=3D'--collect-skipped-logs no'= ; else am__collect_skipped_logs=3D''; fi; if test -n ''; then am__enable_ha= rd_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " in *[\ \ ]= $f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am__expect_= failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_isize_trim > Makefile:1226: update target 'check_primer_trim_edge_cases.log' due to: t= arget does not exist > p=3D'check_primer_trim_edge_cases'; \ > b=3D'check_primer_trim_edge_cases'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_primer_trim_edge_cases.log" in */*) am= __odir=3D`echo "./check_primer_trim_edge_cases.log" | sed 's|/[^/]*$||'`;; = *) am__odir=3D.;; esac; test "x$am__odir" =3D x"." || test -d "$am__odir" |= | /usr/bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D.= /; elif test -f "$f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log= =3D'check_primer_trim_edge_cases.log'; if test -n ''; then am__collect_skip= ped_logs=3D'--collect-skipped-logs no'; else am__collect_skipped_logs=3D'';= fi; if test -n ''; then am__enable_hard_errors=3Dno; else am__enable_hard_= errors=3Dyes; fi; case " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am_= _expect_failure=3Dyes;; *) am__expect_failure=3Dno;; esac; /bin/bash ../t= est-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_primer_trim_edge_cases > Makefile:1219: update target 'check_unpaired_trim.log' due to: target doe= s not exist > p=3D'check_unpaired_trim'; \ > b=3D'check_unpaired_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_unpaired_trim.log" in */*) am__odir=3D= `echo "./check_unpaired_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; = esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -= p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$= f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_unpaired_t= rim.log'; if test -n ''; then am__collect_skipped_logs=3D'--collect-skipped= -logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; then am__= enable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " i= n *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am= __expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_unpaired_trim > Makefile:1212: update target 'check_common_variants.log' due to: target d= oes not exist > p=3D'check_common_variants'; 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log=3D'check_com= mon_variants.log'; if test -n ''; then am__collect_skipped_logs=3D'--collec= t-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; = then am__enable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; ca= se " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dye= s;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-na= me "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_common_variants > Makefile:1205: update target 'check_variants.log' due to: target does not= exist > p=3D'check_variants'; \ > b=3D'check_variants'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; 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mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_removereads.log" in */*) am__odir=3D`e= cho "./check_removereads.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; esac= ; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p "$= am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"; = then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_removereads.lo= g'; if test -n ''; then am__collect_skipped_logs=3D'--collect-skipped-logs = no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; then am__enable= _hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " in *[\ = \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am__expe= ct_failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > FAIL: check_removereads > Makefile:1191: update target 'check_getmasked.log' due to: target does no= t exist > p=3D'check_getmasked'; 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if= test -n ''; then am__collect_skipped_logs=3D'--collect-skipped-logs no'; e= lse am__collect_skipped_logs=3D''; fi; if test -n ''; then am__enable_hard_= errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " in *[\ \ ]$f[= \ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am__expect_fai= lure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_getmasked > Makefile:1184: update target 'check_primer_bed.log' due to: target does n= ot exist > p=3D'check_primer_bed'; \ > b=3D'check_primer_bed'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; 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*) am__expect_= failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_primer_bed > Makefile:1177: update target 'check_consensus_seq_id.log' due to: target = does not exist > p=3D'check_consensus_seq_id'; \ > b=3D'check_consensus_seq_id'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_consensus_seq_id.log" in */*) am__odir= =3D`echo "./check_consensus_seq_id.log" | sed 's|/[^/]*$||'`;; *) am__odir= =3D.;; esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/= mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif tes= t -f "$f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_con= sensus_seq_id.log'; if test -n ''; then am__collect_skipped_logs=3D'--colle= ct-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; if test -n '';= then am__enable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; c= ase " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dy= es;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-n= ame "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_consensus_seq_id > Makefile:1170: update target 'check_consensus_min_depth.log' due to: targ= et does not exist > p=3D'check_consensus_min_depth'; 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fi; tst=3D$dir$f; log=3D'chec= k_consensus_min_depth.log'; if test -n ''; then am__collect_skipped_logs=3D= '--collect-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; if tes= t -n ''; then am__enable_hard_errors=3Dno; else am__enable_hard_errors=3Dye= s; fi; case " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_fai= lure=3Dyes;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-driver = --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_consensus_min_depth > Makefile:1163: update target 'check_consensus_threshold.log' due to: targ= et does not exist > p=3D'check_consensus_threshold'; \ > b=3D'check_consensus_threshold'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_consensus_threshold.log" in */*) am__o= dir=3D`echo "./check_consensus_threshold.log" | sed 's|/[^/]*$||'`;; *) am_= _odir=3D.;; esac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr= /bin/mkdir -p "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; eli= f test -f "$f"; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'chec= k_consensus_threshold.log'; if test -n ''; then am__collect_skipped_logs=3D= '--collect-skipped-logs no'; else am__collect_skipped_logs=3D''; fi; if tes= t -n ''; then am__enable_hard_errors=3Dno; else am__enable_hard_errors=3Dye= s; fi; case " " in *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_fai= lure=3Dyes;; *) am__expect_failure=3Dno;; esac; /bin/bash ../test-driver = --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_consensus_threshold > Makefile:1156: update target 'check_allele_depth.log' due to: target does= not exist > p=3D'check_allele_depth'; \ > b=3D'check_allele_depth'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_allele_depth.log" in */*) am__odir=3D`= echo "./check_allele_depth.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; es= ac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p = "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"= ; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_allele_depth= =2Elog'; if test -n ''; then am__collect_skipped_logs=3D'--collect-skipped-= logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; then am__e= nable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " in= *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am_= _expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_allele_depth > Makefile:1149: update target 'check_consensus.log' due to: target does no= t exist > p=3D'check_consensus'; \ > b=3D'check_consensus'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_consensus.log" in */*) am__odir=3D`ech= o "./check_consensus.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; esac; te= st "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p "$am__= odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"; then= dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_consensus.log'; if= test -n ''; then am__collect_skipped_logs=3D'--collect-skipped-logs no'; e= lse am__collect_skipped_logs=3D''; fi; if test -n ''; then am__enable_hard_= errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " in *[\ \ ]$f[= \ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am__expect_fai= lure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_consensus > Makefile:1142: update target 'check_quality_trim.log' due to: target does= not exist > p=3D'check_quality_trim'; \ > b=3D'check_quality_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_quality_trim.log" in */*) am__odir=3D`= echo "./check_quality_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; es= ac; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p = "$am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"= ; then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_quality_trim= =2Elog'; if test -n ''; then am__collect_skipped_logs=3D'--collect-skipped-= logs no'; else am__collect_skipped_logs=3D''; fi; if test -n ''; then am__e= nable_hard_errors=3Dno; else am__enable_hard_errors=3Dyes; fi; case " " in= *[\ \ ]$f[\ \ ]* | *[\ \ ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am_= _expect_failure=3Dno;; esac; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_quality_trim > Makefile:1135: update target 'check_trim.log' due to: target does not exi= st > p=3D'check_trim'; \ > b=3D'check_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_trim.log" in */*) am__odir=3D`echo "./= check_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; esac; test "x$am__= odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p "$am__odir" || e= xit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"; then dir=3D; e= lse dir=3D"./"; fi; tst=3D$dir$f; log=3D'check_trim.log'; if test -n ''; th= en am__collect_skipped_logs=3D'--collect-skipped-logs no'; else am__collect= _skipped_logs=3D''; fi; if test -n ''; then am__enable_hard_errors=3Dno; el= se am__enable_hard_errors=3Dyes; fi; case " " in *[\ \ ]$f[\ \ ]* | *[\ \ = ]$dir$f[\ \ ]*) am__expect_failure=3Dyes;; *) am__expect_failure=3Dno;; esa= c; /bin/bash ../test-driver --test-name "$f" \ > --log-file $b.log --trs-file $b.trs \ > --color-tests "$am__color_tests" $am__collect_skipped_logs --enable-hard-= errors "$am__enable_hard_errors" --expect-failure "$am__expect_failure" -= - \ > "$tst"=20 > PASS: check_trim > Makefile:1128: update target 'check_primer_trim.log' due to: target does = not exist > p=3D'check_primer_trim'; \ > b=3D'check_primer_trim'; \ > case $- in *e*) set +e;; esac; srcdirstrip=3D`echo "." | sed 's|.|.|g'`; = case $p in ./*) f=3D`echo "$p" | sed "s|^$srcdirstrip/||"`;; *) f=3D$p;; es= ac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg=3D std=3D; am__color_tests=3Dn= o; if test "X" =3D Xno; then am__color_tests=3Dno; elif test "X" =3D Xalway= s; then am__color_tests=3Dyes; elif test "X$TERM" !=3D Xdumb && { test -t 1= ; } 2>/dev/null; then am__color_tests=3Dyes; fi; if test $am__color_tests = =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0;32m'; lgn=3D'=1B[1;32m'; blu= =3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[1m'; std=3D'=1B[m'; fi; }; sr= cdir=3D.; export srcdir; case "check_primer_trim.log" in */*) am__odir=3D`e= cho "./check_primer_trim.log" | sed 's|/[^/]*$||'`;; *) am__odir=3D.;; esac= ; test "x$am__odir" =3D x"." || test -d "$am__odir" || /usr/bin/mkdir -p "$= am__odir" || exit $?; if test -f "./$f"; then dir=3D./; elif test -f "$f"; = then dir=3D; else dir=3D"./"; fi; tst=3D$dir$f; 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then :; else \ > st=3D0; \ > errmsg=3D"fatal: making test-suite.log: failed to create"; \ > for i in $redo_bases; do \ > test -f $i.trs && test -r $i.trs \ > || { echo "$errmsg $i.trs" >&2; st=3D1; }; \ > test -f $i.log && test -r $i.log \ > || { echo "$errmsg $i.log" >&2; st=3D1; }; \ > done; \ > test $st -eq 0 || exit 1; \ > fi > case $- in *e*) set +e;; esac; { mgn=3D red=3D grn=3D lgn=3D blu=3D brg= =3D std=3D; am__color_tests=3Dno; if test "X" =3D Xno; then am__color_tests= =3Dno; elif test "X" =3D Xalways; then am__color_tests=3Dyes; elif test "X$= TERM" !=3D Xdumb && { test -t 1; } 2>/dev/null; then am__color_tests=3Dyes;= fi; if test $am__color_tests =3D yes; then red=3D'=1B[0;31m'; grn=3D'=1B[0= ;32m'; lgn=3D'=1B[1;32m'; blu=3D'=1B[1;34m'; mgn=3D'=1B[0;35m'; brg=3D'=1B[= 1m'; std=3D'=1B[m'; fi; }; bases=3D'check_primer_trim.log check_trim.log ch= eck_quality_trim.log check_consensus.log check_allele_depth.log check_conse= nsus_threshold.log check_consensus_min_depth.log check_consensus_seq_id.log= check_primer_bed.log check_getmasked.log check_removereads.log check_varia= nts.log check_common_variants.log check_unpaired_trim.log check_primer_trim= _edge_cases.log check_isize_trim.log check_interval_tree.log check_amplicon= _search.log check_consensus_min_insert_threshold.log check_quality_trim_unp= aired.log check_strand_variants.log'; bases=3D`for i in $bases; do echo $i;= done | sed 's/\.log$//'`; bases=3D`echo $bases`; \ > ws=3D'[ ]'; \ > results=3D`for b in $bases; do echo $b.trs; done`; \ > test -n "$results" || results=3D/dev/null; \ > all=3D` grep "^$ws*:test-result:" $results | wc -l`; \ > pass=3D` grep "^$ws*:test-result:$ws*PASS" $results | wc -l`; \ > fail=3D` grep "^$ws*:test-result:$ws*FAIL" $results | wc -l`; \ > skip=3D` grep "^$ws*:test-result:$ws*SKIP" $results | wc -l`; \ > xfail=3D`grep "^$ws*:test-result:$ws*XFAIL" $results | wc -l`; \ > xpass=3D`grep "^$ws*:test-result:$ws*XPASS" $results | wc -l`; \ > error=3D`grep "^$ws*:test-result:$ws*ERROR" $results | wc -l`; \ > if test `expr $fail + $xpass + $error` -eq 0; then \ > success=3Dtrue; \ > else \ > success=3Dfalse; \ > fi; \ > br=3D'=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D'; br=3D$b= r$br$br$br; \ > result_count () \ > { \ > if test x"$1" =3D x"--maybe-color"; then \ > maybe_colorize=3Dyes; \ > elif test x"$1" =3D x"--no-color"; then \ > maybe_colorize=3Dno; \ > else \ > echo "test-suite.log: invalid 'result_count' usage" >&2; exit 4; \ > fi; \ > shift; \ > desc=3D$1 count=3D$2; \ > if test $maybe_colorize =3D yes && test $count -gt 0; then \ > color_start=3D$3 color_end=3D$std; \ > else \ > color_start=3D color_end=3D; \ > fi; \ > echo "${color_start}# $desc $count${color_end}"; \ > }; \ > create_testsuite_report () \ > { \ > result_count $1 "TOTAL:" $all "$brg"; \ > result_count $1 "PASS: " $pass "$grn"; \ > result_count $1 "SKIP: " $skip "$blu"; \ > result_count $1 "XFAIL:" $xfail "$lgn"; \ > result_count $1 "FAIL: " $fail "$red"; \ > result_count $1 "XPASS:" $xpass "$red"; \ > result_count $1 "ERROR:" $error "$mgn"; \ > }; \ > output_system_information () \ > { \ > echo; \ > { uname -a | mawk '{ \ > printf "System information (uname -a):"; \ > for (i =3D 1; i < NF; ++i) \ > { \ > if (i !=3D 2) \ > printf " %s", $i; \ > } \ > printf "\n"; \ > }'; } 2>&1; \ > if test -r /etc/os-release; then \ > echo "Distribution information (/etc/os-release):"; \ > sed 8q /etc/os-release; \ > elif test -r /etc/issue; then \ > echo "Distribution information (/etc/issue):"; \ > cat /etc/issue; \ > fi; \ > }; \ > please_report () \ > { \ > echo "Some test(s) failed. Please report this to gkarthik@scripps.edu,";= \ > echo "together with the test-suite.log file (gzipped) and your system"; = \ > echo "information. Thanks."; = \ > }; \ > { \ > echo "ivar 1.4.4: tests/test-suite.log" | \ > { sed 's/.*/ & /;h;s/./=3D/g;p;x;s/ *$//;p;g' && echo; }; \ > create_testsuite_report --no-color; \ > output_system_information; \ > echo; \ > echo ".. contents:: :depth: 2"; \ > echo; \ > for b in $bases; do echo $b; done \ > | mawk ' function fatal(msg) { print "fatal: making test-suite.log: "= msg | "cat >&2"; exit 1; } function rst_section(header) { print header; le= n =3D length(header); for (i =3D 1; i <=3D len; i =3D i + 1) printf "=3D"; = printf "\n\n"; } { copy_in_global_log =3D 1; global_test_result =3D "RUN"; = while ((rc =3D (getline line < ($0 ".trs"))) !=3D 0) { if (rc < 0) fatal("f= ailed to read from " $0 ".trs"); if (line ~ /^[ ]*:global-test-result:[ ]= */) { sub("^[ ]*:global-test-result:[ ]*", "", line); sub("[ ]*$", "", l= ine); global_test_result =3D line; } else if (line ~ /^[ ]*:copy-in-global= -log:[ ]*[nN][oO]/) copy_in_global_log =3D 0; }; if (copy_in_global_log) {= rst_section(global_test_result ": " $0); while ((rc =3D (getline line < ($= 0 ".log"))) !=3D 0) { if (rc < 0) fatal("failed to read from " $0 ".log"); = print line; }; printf "\n"; }; close ($0 ".trs"); close ($0 ".log"); }'; = \ > } >test-suite.log.tmp || exit 1; \ > mv test-suite.log.tmp test-suite.log; \ > if $success; then \ > col=3D"$grn"; \ > else \ > col=3D"$red"; \ > test x"$VERBOSE" =3D x || cat test-suite.log; \ > fi; \ > echo "${col}$br${std}"; \ > echo "${col}Testsuite summary"' for ivar 1.4.4'"${std}"; \ > echo "${col}$br${std}"; \ > create_testsuite_report --maybe-color; \ > echo "$col$br$std"; \ > if $success; then :; else \ > echo "${col}See tests/test-suite.log for debugging.${std}";\ > if test -n "gkarthik@scripps.edu"; then \ > please_report | sed -e "s/^/${col}/" -e s/'$'/"${std}"/; \ > fi; \ > echo "$col$br$std"; \ > fi; \ > $success || exit 1 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D > ivar 1.4.4: tests/test-suite.log > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D >=20 > # TOTAL: 21 > # PASS: 20 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 >=20 > System information (uname -a): Linux 6.1.0-32-cloud-amd64 #1 SMP PREEMPT_= DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 > Distribution information (/etc/os-release): > PRETTY_NAME=3D"Debian GNU/Linux trixie/sid" > NAME=3D"Debian GNU/Linux" > VERSION_CODENAME=3Dtrixie > ID=3Ddebian > HOME_URL=3D"https://www.debian.org/" > SUPPORT_URL=3D"https://www.debian.org/support" > BUG_REPORT_URL=3D"https://bugs.debian.org/" >=20 > .. contents:: :depth: 2 >=20 > FAIL: check_removereads > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D >=20 > Found 8 primers in BED file > Writing to ../data/test.trimmed.masked.bam > [E::idx_find_and_load] Could not retrieve index file for '../data/test.tr= immed.sorted.bam' > Number of references: 1 > Reference Name: Consensus_ZI-27_threshold_0_quality_20 > Reference Length: 10086 > Using Region: Consensus_ZI-27_threshold_0_quality_20 > Sorted By Coordinate > Results: > 0 reads were removed. > FAIL check_removereads (exit status: 1) >=20 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D > Testsuite summary for ivar 1.4.4 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D > # TOTAL: 21 > # PASS: 20 > # SKIP: 0 > # XFAIL: 0 > # FAIL: 1 > # XPASS: 0 > # ERROR: 0 > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D > See tests/test-suite.log for debugging. > Some test(s) failed. Please report this to gkarthik@scripps.edu, > together with the test-suite.log file (gzipped) and your system > information. Thanks. > =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D > make[5]: *** [Makefile:976: test-suite.log] Error 1 shuffle=3Dreverse > make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/test= s' > make[4]: *** [Makefile:1111: check-TESTS] Error 2 shuffle=3Dreverse > make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/test= s' > make[3]: *** [Makefile:1323: check-am] Error 2 shuffle=3Dreverse > make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/test= s' > make[2]: *** [Makefile:377: check-recursive] Error 1 shuffle=3Dreverse > make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' > dh_auto_test: error: make -j1 check "TESTSUITEFLAGS=3D-j1 --verbose" VERB= OSE=3D1 returned exit code 2 The full build log is available from: http://qa-logs.debian.net/2025/05/05/shuffle/reverse/ivar_1.4.4+dfsg-1_unst= able_reverse.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects ]