[From nobody Fri Sep 11 11:07:06 2026 Received: (at submit) by bugs.debian.org; 13 Aug 2023 20:24:49 +0000 X-Spam-Checker-Version: SpamAssassin 3.4.6-bugs.debian.org_2005_01_02 (2021-04-09) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-103.2 required=4.0 tests=ATTENDEES_DBSPAM_BODY3, ATTENDEES_DBSPAM_BODY7,BAYES_00,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER,FVGT_m_MULTI_ODD, MURPHY_DRUGS_REL8,SPF_HELO_NONE,SPF_NONE,UNPARSEABLE_RELAY, USER_IN_DKIM_WELCOMELIST,USER_IN_DKIM_WHITELIST autolearn=ham autolearn_force=no version=3.4.6-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 215; hammy, 150; neutral, 177; spammy, 0. spammytokens: hammytokens:0.000-+--python3, 0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin Return-path: <lucas@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:35222) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=stravinsky.debian.org, EMAIL=hostmaster@stravinsky.debian.org (verified) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <lucas@debian.org>) id 1qVHdq-00451l-DY for submit@bugs.debian.org; Sun, 13 Aug 2023 20:24:49 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Message-Id:Date:Subject:To:From: Reply-To:Cc:MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=IAFYFOhqj5XE1GWymHGbAVBe1JkvXfCoBkyiKcfMg8A=; b=f4h+12K2E6wEFJ5qLmYR+o7w6d LJwA/a7NDf2w4jiEpfeb8iHZ5sUoume56rAX3GW40jVo0GoengVOPaj6Yyh6HIWIbP0R144/VbCSZ gjLOw2eHBF73TXj2LfXcBwhanbbXufOq+5j4kk7xCTISKcahus9szhK/RmemX0Puu8QR7IpqjWd4a zwItEP9a9/RyIfAKTN16EB1Aj9amJT3xEy3Dfa1vJkWGtrBA7QuyoCia+D3pxcDBWRiHZ1/X9Xv4R gX4UOKrgnaYJSNWt3fbRPnG2dxHw+60F1r64yyZSUv/GEcwenrQwPNbpfCnskVd1goAShMSM74wxk rViL1sIg==; Received: from authenticated user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <lucas@debian.org>) id 1qVHdo-001uZx-C1 for submit@bugs.debian.org; Sun, 13 Aug 2023 20:24:47 +0000 From: Lucas Nussbaum <lucas@debian.org> To: submit@bugs.debian.org Subject: librcsb-core-wrapper: Fails to build source after successful build Date: Sun, 13 Aug 2023 21:20:54 +0200 Message-Id: <1691954454.672838.1278372.nullmailer@grub.nussbaum.fr> X-Debian-User: lucas Delivered-To: submit@bugs.debian.org Source: librcsb-core-wrapper Version: 1.005-11 Severity: minor Tags: trixie sid ftbfs User: lucas@debian.org Usertags: ftbfs-sab-20230813 ftbfs-source-after-build User: debian-qa@lists.debian.org Usertags: qa-doublebuild Hi, This package fails to build a source package after a successful build (dpkg-buildpackage ; dpkg-buildpackage -S). This is probably a clear violation of Debian Policy section 4.9 (clean target), but this is filed as severity:minor for now, because a discussion on debian-devel showed that we might want to revisit the requirement of a working 'clean' target. More information about this class of issues, included common problems and solutions, is available at https://wiki.debian.org/qa.debian.org/FTBFS/SourceAfterBuild Relevant part of the build log: > cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S > ----------------------------------------------------------------------------------------------------------------------------------------------- > > dpkg-buildpackage: info: source package librcsb-core-wrapper > dpkg-buildpackage: info: source version 1.005-11 > dpkg-buildpackage: info: source distribution unstable > dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org> > dpkg-source --before-build . > debian/rules clean > dh clean --with python3 > debian/rules override_dh_auto_clean > make[1]: Entering directory '/<<PKGBUILDDIR>>' > dh_auto_clean > make -j8 clean > make[2]: Entering directory '/<<PKGBUILDDIR>>' > rm -rf docs > > ------------------------------------------------------------ > **** Cleaning etc **** > ------------------------------------------------------------ > > ------------------------------------------------------------ > **** Cleaning common **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/common' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > > ------------------------------------------------------------ > **** Cleaning test results in dict-obj-file **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/dict-obj-file' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/dict-obj-file' > > ------------------------------------------------------------ > **** Cleaning test results in pdbml-parser **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/pdbml-parser' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/common' > > ------------------------------------------------------------ > **** Cleaning tables **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/tables' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/pdbml-parser' > rm -rf rcsb > make[3]: Leaving directory '/<<PKGBUILDDIR>>/tables' > > ------------------------------------------------------------ > **** Cleaning regex **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/regex' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/regex' > > ------------------------------------------------------------ > **** Cleaning cif-file **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/cif-file' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/cif-file' > > ------------------------------------------------------------ > **** Cleaning cif-parser **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/cif-parser' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/cif-parser' > > ------------------------------------------------------------ > **** Cleaning cif-file-util **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/cif-file-util' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/cif-file-util' > > ------------------------------------------------------------ > **** Cleaning dict-obj-file **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/dict-obj-file' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/dict-obj-file' > > ------------------------------------------------------------ > **** Cleaning pdbml-parser **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/pdbml-parser' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/pdbml-parser' > > ------------------------------------------------------------ > **** Cleaning cctbx **** > ------------------------------------------------------------ > make[3]: Entering directory '/<<PKGBUILDDIR>>/cctbx' > make[3]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule. > make[3]: Leaving directory '/<<PKGBUILDDIR>>/cctbx' > make[2]: Leaving directory '/<<PKGBUILDDIR>>' > rm -rf wrapper/python/build > make[1]: Leaving directory '/<<PKGBUILDDIR>>' > dh_clean > dpkg-source -b . > dpkg-source: info: using source format '3.0 (quilt)' > dpkg-source: info: building librcsb-core-wrapper using existing ./librcsb-core-wrapper_1.005.orig.tar.gz > dpkg-source: info: using patch list from debian/patches/series > dpkg-source: error: cannot represent change to wrapper/python/src: > dpkg-source: error: new version is symlink to ../src > dpkg-source: error: old version is nonexistent > dpkg-source: warning: ignoring deletion of file dict-obj-file/test/mmcif_std.odb, use --include-removal to override > dpkg-source: error: cannot represent change to .pybuild/cpython3_3.11/build/CorePyWrap.cpython-311-x86_64-linux-gnu.so: binary file contents changed > dpkg-source: error: add .pybuild/cpython3_3.11/build/CorePyWrap.cpython-311-x86_64-linux-gnu.so in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: warning: executable mode 0755 of '.pybuild/cpython3_3.11/build/CorePyWrap.cpython-311-x86_64-linux-gnu.so' will not be represented in diff > dpkg-source: error: cannot represent change to cif-file-util/obj/.libs/CifCorrector.o: binary file contents changed > dpkg-source: error: add cif-file-util/obj/.libs/CifCorrector.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file-util/obj/.libs/CifFileUtil.o: binary file contents changed > dpkg-source: error: add cif-file-util/obj/.libs/CifFileUtil.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file/obj/.libs/CifDataInfo.o: binary file contents changed > dpkg-source: error: add cif-file/obj/.libs/CifDataInfo.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file/obj/.libs/CifExcept.o: binary file contents changed > dpkg-source: error: add cif-file/obj/.libs/CifExcept.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file/obj/.libs/CifFile.o: binary file contents changed > dpkg-source: error: add cif-file/obj/.libs/CifFile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file/obj/.libs/CifParentChild.o: binary file contents changed > dpkg-source: error: add cif-file/obj/.libs/CifParentChild.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file/obj/.libs/DicFile.o: binary file contents changed > dpkg-source: error: add cif-file/obj/.libs/DicFile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-file/obj/.libs/ParentChild.o: binary file contents changed > dpkg-source: error: add cif-file/obj/.libs/ParentChild.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/CifFileReadDef.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/CifFileReadDef.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/CifParser.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/CifParser.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/CifParserBase.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/CifParserBase.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/CifScanner.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/CifScanner.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/CifScannerBase.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/CifScannerBase.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/DICParser.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/DICParser.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/DICParserBase.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/DICParserBase.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/DICScanner.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/DICScanner.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to cif-parser/obj/.libs/DICScannerBase.o: binary file contents changed > dpkg-source: error: add cif-parser/obj/.libs/DICScannerBase.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/BlockIO.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/BlockIO.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/CifString.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/CifString.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/DataInfo.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/DataInfo.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/Exceptions.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/Exceptions.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/GenCont.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/GenCont.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/GenString.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/GenString.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/RcsbFile.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/RcsbFile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/RcsbPlatform.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/RcsbPlatform.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/Serializer.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/Serializer.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/mapped_ptr_vector.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/mapped_ptr_vector.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to common/obj/.libs/mapped_vector.o: binary file contents changed > dpkg-source: error: add common/obj/.libs/mapped_vector.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to dict-obj-file/obj/.libs/DictDataInfo.o: binary file contents changed > dpkg-source: error: add dict-obj-file/obj/.libs/DictDataInfo.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to dict-obj-file/obj/.libs/DictObjCont.o: binary file contents changed > dpkg-source: error: add dict-obj-file/obj/.libs/DictObjCont.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to dict-obj-file/obj/.libs/DictObjContInfo.o: binary file contents changed > dpkg-source: error: add dict-obj-file/obj/.libs/DictObjContInfo.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to dict-obj-file/obj/.libs/DictObjFile.o: binary file contents changed > dpkg-source: error: add dict-obj-file/obj/.libs/DictObjFile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to dict-obj-file/obj/.libs/DictParentChild.o: binary file contents changed > dpkg-source: error: add dict-obj-file/obj/.libs/DictParentChild.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to pdbml-parser/obj/.libs/PdbMlFileUtil.o: binary file contents changed > dpkg-source: error: add pdbml-parser/obj/.libs/PdbMlFileUtil.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to pdbml-parser/obj/.libs/PdbMlParserHandler.o: binary file contents changed > dpkg-source: error: add pdbml-parser/obj/.libs/PdbMlParserHandler.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to pdbml-parser/obj/.libs/misc_util.o: binary file contents changed > dpkg-source: error: add pdbml-parser/obj/.libs/misc_util.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to regex/obj/.libs/regcomp.o: binary file contents changed > dpkg-source: error: add regex/obj/.libs/regcomp.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to regex/obj/.libs/regerror.o: binary file contents changed > dpkg-source: error: add regex/obj/.libs/regerror.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to regex/obj/.libs/regexec.o: binary file contents changed > dpkg-source: error: add regex/obj/.libs/regexec.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to regex/obj/.libs/regfree.o: binary file contents changed > dpkg-source: error: add regex/obj/.libs/regfree.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to tables/obj/.libs/ISTable.o: binary file contents changed > dpkg-source: error: add tables/obj/.libs/ISTable.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to tables/obj/.libs/ITTable.o: binary file contents changed > dpkg-source: error: add tables/obj/.libs/ITTable.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to tables/obj/.libs/TTable.o: binary file contents changed > dpkg-source: error: add tables/obj/.libs/TTable.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: cannot represent change to tables/obj/.libs/TableFile.o: binary file contents changed > dpkg-source: error: add tables/obj/.libs/TableFile.o in debian/source/include-binaries if you want to store the modified binary in the debian tarball > dpkg-source: error: unrepresentable changes to source > dpkg-buildpackage: error: dpkg-source -b . subprocess returned exit status 1 > > E: Command 'cd /<<PKGBUILDDIR>> && runuser -u user42 -- dpkg-buildpackage --sanitize-env -us -uc -rfakeroot -S' failed to run. The full build log is available from: http://qa-logs.debian.net/2023/08/13/librcsb-core-wrapper_1.005-11_unstable.log If you reassign this bug to another package, please mark it as 'affects'-ing this package. See https://www.debian.org/Bugs/server-control#affects If you fail to reproduce this, please provide a build log and diff it with mine so that we can identify if something relevant changed in the meantime. ]