[From nobody Tue Sep 22 21:23:05 2026 Received: (at submit) by bugs.debian.org; 15 Sep 2026 10:31:45 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-120.0 required=4.0 tests=BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FROMDEVELOPER,FVGT_m_MULTI_ODD, HAS_PACKAGE,RCVD_IN_DNSWL_MED,SPF_HELO_PASS,SPF_PASS, USER_IN_DKIM_WELCOMELIST,X_DEBBUGS_CC autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 48; hammy, 150; neutral, 101; spammy, 0. spammytokens: hammytokens:0.000-+--pkgbuilddir, 0.000-+--PKGBUILDDIR, 0.000-+--HTo:N*Debian, 0.000-+--forky, 0.000-+--H*F:U*sanvila Return-path: <sanvila@debian.org> Received: from mitropoulos.debian.org ([2001:648:2ffc:deb:216:61ff:fe9d:958d]:38306) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1x6QS1-00653P-1L for submit@bugs.debian.org; Tue, 15 Sep 2026 10:31:45 +0000 Received: via submission from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by mitropoulos.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1x6QRz-005vdz-2U for submit@bugs.debian.org; Tue, 15 Sep 2026 10:31:43 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Subject:To:From:Reply-To:Cc: MIME-Version:Content-Type:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=v9i36jO46e07Fc+X3KM1SvXaQDcL+VOC+8dNQCDgNgk=; b=bxDSwdUwXu+2stVQMojkflw4D6 t/Ek5FhpvuGKOKUUinUxCljO0oyDsOghvin3vB4pV9dCUMUiQkmHKOkHrkntzNAcICbY6q4HUic7t 03Yw7sGJwN2eRN+ClKlSU8n5ESH+/RhLzKH6WmDPYsniGyvFJ/KoLeWeC1B04huqZuiDIFHfoQA32 WC8rbr3Z49YX0/JF4WumC+mJ/TzGdmXe3tuhOepiN4TGGQS70+ShsVKlmfk1818LNlfMfd0+mDrKm 8A7F0qroHCmPhvvXRch+AcOsYbjzbg+RTjbvRZbhpfEb3OXwsQqdHP1IPQY/63t/EuCNx0uXfNn9y wg1UwFZg==; Received: from sanvila by paradis.debian.org with local (Exim 4.96) (envelope-from <sanvila@debian.org>) id 1x6QRy-005PWC-0S for submit@bugs.debian.org; Tue, 15 Sep 2026 10:31:42 +0000 From: Santiago Vila <sanvila@debian.org> To: Debian BTS <submit@bugs.debian.org> Subject: python-seqcluster: FTBFS: ModuleNotFoundError: No module named 'pkg_resources' X-Debbugs-Cc: sanvila@debian.org Message-Id: <E1x6QRy-005PWC-0S@paradis.debian.org> Date: Tue, 15 Sep 2026 10:31:42 +0000 Delivered-To: submit@bugs.debian.org Package: src:python-seqcluster Version: 1.2.9+ds-7 Severity: serious Tags: ftbfs forky sid Dear maintainer: During a rebuild of all packages in unstable, this package failed to build. Below you will find the last part of the build log (probably the most relevant part, but not necessarily). If required, the full build log is available here: https://people.debian.org/~sanvila/build-logs/202609/ About the archive rebuild: The build was made on virtual machines from AWS, using sbuild and a reduced chroot with only build-essential packages. If you cannot reproduce the bug please contact me privately, as I am willing to provide ssh access to a virtual machine where the bug is fully reproducible. If this is really a bug in one of the build-depends, please use reassign and add an affects on src:python-seqcluster, so that this is still visible in the BTS web page for this package. Thanks. -------------------------------------------------------------------------------- [...] from seqcluster.prepare_data import _read_fastq_files, _create_matrix_uniq_seq File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_seqcluster/build/seqcluster/__init__.py", line 2, in <module> from seqcluster.libs import config File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_seqcluster/build/seqcluster/libs/config.py", line 1, in <module> import pkg_resources ModuleNotFoundError: No module named 'pkg_resources' ---------------------------------------------------------------------- Ran 5 tests in 0.048s FAILED (errors=4) seqcluster cluster -m ../../data/examples/cluster/seqs_set.ma -a ../../data/examples/cluster/seqs_map.bam --gtf ../../data/examples/cluster/ann_reduced.gtf -r ../../data/genomes/genome.fa -o test_out_res seqcluster seqbuster --sps hsa --hairpin ../../data/examples/miraligner/hairpin.fa --mirna ../../data/examples/miraligner/miRNA.str --gtf ../../data/examples/miraligner/hsa.gff3 -o test_out_mirs_fasta --miraligner ../../data/examples/miraligner/sim_isomir.fa E: pybuild pybuild:485: test: plugin custom failed with: exit code=1: cd /<<PKGBUILDDIR>>; export PATH=/<<PKGBUILDDIR>>/debian/python3-seqcluster/usr/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games ; cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.14_seqcluster/build; export PYTHONPATH=/<<PKGBUILDDIR>>:; python3.14 -m nose2 -q dh_auto_test: error: pybuild --test --test-nose2 -i python{version} -p 3.14 --parallel=2 returned exit code 13 make[1]: *** [debian/rules:34: override_dh_auto_test] Error 25 make[1]: Leaving directory '/<<PKGBUILDDIR>>' make: *** [debian/rules:8: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess failed with exit status 2 -------------------------------------------------------------------------------- ]