[From nobody Thu Sep 24 14:21:08 2026 Received: (at maintonly) by bugs.debian.org; 31 Aug 2025 23:03:56 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-109.0 required=4.0 tests=BAYES_00,DKIMWL_WL_HIGH, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,FOURLA,FROMDEVELOPER, FVGT_m_MULTI_ODD,MD5_SHA1_SUM,MEDS2,MSGID_FROM_MTA_HEADER,PGPSIGNATURE, SPF_HELO_NONE,SPF_NONE,UNPARSEABLE_RELAY,USER_IN_DKIM_WELCOMELIST autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 98; hammy, 150; neutral, 334; spammy, 0. spammytokens: hammytokens:0.000-+--UD:debian.tar.xz, 0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311 Return-path: <roehling@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:55136) by buxtehude.debian.org with utf8esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <roehling@debian.org>) id 1usr5Y-00AjWR-1l for maintonly@bugs.debian.org; Sun, 31 Aug 2025 23:03:56 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:To:From:Subject:MIME-Version: Content-Transfer-Encoding:Content-Type:Message-ID:Date:Reply-To:Cc:Content-ID :Content-Description:In-Reply-To:References; bh=HD5qrzlwyUeXa3DlL3/vi9P5mIDmjubleO2FEoY60cE=; b=umuK/zD6xVFhhJUjZNmkpKfHX6 wmrJj/AJIhpWSa9p7ICPUCDL6DWlj0ysT3+h7SabArvARPKfmTfTdiWTVE7y9sxs5mBD0A11TL/1D gcRY4QeprZTm51hUtFkZsmAfhCDCbeYD7TlZWs8Ogz8vZDXa/pl/iFW+d1cwNtAdHu9/vhFcMMIgC TphWFAS9IfrcjaYSvxnwZcfoekuGoC7DBjh4LmYn1ZQtHti/Ha4p7hPGit40JANwmn5rJSt8AjXF9 KcAVREZaM/46c1TweqW8e2JCVzPCwWOxnmRQwE2zYg59iIdLMIDkJLyO5WjF0okQJe1R6LXiDegoG BK3RwR2Q==; Received: from authenticated user by stravinsky.debian.org with utf8esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <roehling@debian.org>) id 1usr5W-000OHG-CO for maintonly@bugs.debian.org; Sun, 31 Aug 2025 23:03:55 +0000 Date: Mon, 01 Sep 2025 01:03:54 +0200 Message-ID: <af9a71a7b764cd90444783acf7aeb482@debian.org> Received: from roehling3.cms.fkie.fraunhofer.de (localhost.localdomain [127.0.0.1]) by localhost.localdomain [127.0.0.1] (msmtpd) with ESMTP; Mon, 01 Sep 2025 01:03:53 +0200 Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable MIME-Version: 1.0 Subject: relion: FTBFS with CMake 4 From: roehling@debian.org To: maintonly@bugs.debian.org X-Debian-User: roehling Delivered-To: maintonly@bugs.debian.org Source: relion Version: 3.1.3-4 Severity: serious User: cmake@packages.debian.org Usertags: cmake-4 Tags: ftbfs, forky, sid Dear maintainer, During a test rebuild for CMake 4, relion failed to rebuild. Log Summary: -----------------------------------------------------------------------------= -- [...] +----------------------------------------------------------------------------= --+ | Build Sat, 30 Aug 2025 16:57:46 +000= 0 | +----------------------------------------------------------------------------= --+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: relion Binary: relion, relion-gui Architecture: any Version: 3.1.3-4 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debi= an.org> Uploaders: Roland Fehrenbacher <rfehren@debian.org>, Andreas Tille <tille@deb= ian.org>, Homepage: https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/relion Vcs-Git: https://salsa.debian.org/med-team/relion.git Testsuite: autopkgtest Build-Depends: cmake, debhelper-compat (=3D 13), libfftw3-dev, libfltk1.3-dev= , mpi-default-dev, libtiff-dev, fluid Package-List: relion deb science optional arch=3Dany relion-gui deb science optional arch=3Dany Checksums-Sha1: c6ca397db6c711f87305bd803f672345f7487bae 2345487 relion_3.1.3.orig.tar.gz cbd977bd73a6270bab2fc9aca5779296c528315b 12056 relion_3.1.3-4.debian.tar.xz Checksums-Sha256: f10934058e0670807b7004899d7b5103c21ad77841219352c66a33f98586d42e 2345487 rel= ion_3.1.3.orig.tar.gz 5dfd505bf26bb03602300ad0b21ed1e6459f97491725abdb5dfa79427972a46a 12056 relio= n_3.1.3-4.debian.tar.xz Files: 5ddaf9afe51d743c5f58f625d9fd1cb7 2345487 relion_3.1.3.orig.tar.gz d7e1621d2cf43aa84fc9c84f31ece31b 12056 relion_3.1.3-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmcvqOQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq5XhAAi2JZBOvwNQepfXxfokEG0B/f52Qh wjokzJyLMtdn4jOCMucgKwDkLiYKE3IhijrB7PHEHvbLUwa7pOU/mkxf36uYwY58 53e/zJrYmmdfnGO2DCtHCmSagbTU5NB2PI8rWi7ZOPPxkDKHzXJj+SN6nTXvSZb9 bEH9lBVbsgpxiUo40SN24unL1SrIqBDaOMvaiXJvSu50cF+ibeXhWISXyDS3etuS 9ARzfN8JltyeC/fp0Pawcan+OxytEvsIG1QMzNy3v2NAy98H1HeOL/hm7A4TgRgP R3fhOdfqloOTZAvdL2TVSJS+LznwoPUfPNlRjUEjPjIXj27Q8IRVakt9ENyaEVjK AXk4DtOaSEqx2qWa/M4GND1tBc5VqtefeVA+5+epFvCABbnBD2nJcHgmkZc95VDy hsYGbps6xzHnhTSc+Fq5VR1/rym7Q/LFFTc1qk2QU9YEXr7oONP+e0gZmhiUGSxE 2yOc60ihgvr1MT6uksq+C8OPQDB9Tsk22clT2xresUVIGXQxg9HI0L+tlrqkcxz1 +uTI9RzkxQz+bvULKvNmdBjMYhTBoRv7+0pvycVzqO4c2MTlRXc7jE8PvEI66S0m V7FYN/n2Jh4eksRWSC9dFPIIKhnYm1nlXz3JIKgFXeRThQ20tixfQTeoKYKZ8SdE cjIJ+ooqY1d8WUs=3D =3D+RH5 -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./relion_3.1.3-4.dsc= : no acceptable signature found dpkg-source: info: extracting relion in /build/reproducible-path/relion-3.1.3 dpkg-source: info: unpacking relion_3.1.3.orig.tar.gz dpkg-source: info: unpacking relion_3.1.3-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Repair-wrong-comment-sign-pointed-out-by-Ale= xey-Roma.patch dpkg-source: info: applying typos.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=3D/var/lib/sbuild/apt.conf HOME=3D/sbuild-nonexistent LANG=3DC.UTF-8 LC_ALL=3DC.UTF-8 LOGNAME=3Dsbuild PATH=3D/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SHELL=3D/bin/sh USER=3Dsbuild dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -us -uc -b dpkg-buildpackage: info: source package relion dpkg-buildpackage: info: source version 3.1.3-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by =C3=89tienne Mollier <emollier@deb= ian.org> dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/relion-3.1.3' dh_clean rm -rf build make[1]: Leaving directory '/build/reproducible-path/relion-3.1.3' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/relion-3.1.3' mkdir /build/reproducible-path/relion-3.1.3/build cd /build/reproducible-path/relion-3.1.3/build; \ CC=3Dgcc CXX=3Dg++ cmake -DCMAKE_INSTALL_PREFIX=3D/usr -DCMAKE_FIND_PACKAGE_N= O_PACKAGE_REGISTRY=3DON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=3DON -DCM= AKE_SKIP_RPATH=3DTRUE -DDoublePrec_GPU=3DON -DGUI=3DON -DCUDA=3DOFF /build/re= producible-path/relion-3.1.3 CMake Error at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.5 has been removed from CMake. Update the VERSION argument <min> value. Or, use the <min>...<max> syntax to tell CMake that the project requires at least <min> but has been updated to work with policies introduced by <max> or earlier. Or, add -DCMAKE_POLICY_VERSION_MINIMUM=3D3.5 to try configuring anyway. -- Configuring incomplete, errors occurred! make[1]: *** [debian/rules:37: override_dh_auto_configure] Error 1 make[1]: Leaving directory '/build/reproducible-path/relion-3.1.3' make: *** [debian/rules:33: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status= 2 -----------------------------------------------------------------------------= --- Build finished at 2025-08-30T16:57:57Z -----------------------------------------------------------------------------= -- The above is just how the build ends and not necessarily the most relevant pa= rt. If required, the full build log is available here (for the next 30 days): https://debusine.debian.net/artifact/2410094/ The most likely cause of build failures is the removed backwards compatibilit= y for CMake versions earlier than 3.5. You can find additional information in my debian-devel announcement: https://lists.debian.org/debian-devel/2025/04/msg00310.html About the archive rebuild: The build was made on debusine.debian.net, using sbuild. You can find the build task here: https://debusine.debian.net/work-request/154727/ If this is really a bug in one of the build-depends, please use reassign and affects, so that this is still visible in the BTS web page for this package. Thanks, Timo ]