[From nobody Thu Sep 24 14:21:06 2026 Received: (at maintonly) by bugs.debian.org; 17 Feb 2025 17:50:19 +0000 X-Spam-Checker-Version: SpamAssassin 3.4.6-bugs.debian.org_2005_01_02 (2021-04-09) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-118.1 required=4.0 tests=ALL_TRUSTED,BAYES_00, BODY_INCLUDES_PACKAGE,DKIMWL_WL_HIGH,DKIM_SIGNED,DKIM_VALID, DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FROMDEVELOPER,FVGT_m_MULTI_ODD, HAS_PACKAGE,USER_IN_DKIM_WELCOMELIST,USER_IN_DKIM_WHITELIST autolearn=ham autolearn_force=no version=3.4.6-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 35; hammy, 150; neutral, 163; spammy, 0. spammytokens: hammytokens:0.000-+--trixie, 0.000-+--H*F:U*doko, 0.000-+--qalogsdebiannet, 0.000-+--UD:qa-logs.debian.net, 0.000-+--qa-logs.debian.net Return-path: <doko@paradis.debian.org> Received: from muffat.debian.org ([2607:f8f0:614:1::1274:33]:45812) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=muffat.debian.org, EMAIL=hostmaster@muffat.debian.org (verified) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <doko@paradis.debian.org>) id 1tk5G6-00Ahqq-SU for maintonly@bugs.debian.org; Mon, 17 Feb 2025 17:50:19 +0000 Received: from paradis.debian.org ([2607:f8f0:614:1::1274:67]:48934) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=paradis.debian.org, EMAIL=hostmaster@paradis.debian.org (verified) by muffat.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <doko@paradis.debian.org>) id 1tk5G6-00GZHC-G0 for maintonly@bugs.debian.org; Mon, 17 Feb 2025 17:50:18 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.paradis; h=Date:Message-Id:Content-Transfer-Encoding:Content-Type: MIME-Version:From:Subject:To:Reply-To:Cc:Content-ID:Content-Description: In-Reply-To:References; bh=9QCisTLuJAlBGXd8wuBxrKiRfzRHUW7WqcdHEqVpTf4=; b=nx k/U95f2/Mfr1tmJoeHA2d5IrPND2ojkJF4Q7oXGalLiDEYoinFU0by8hYkOG+qQKsxaZjxqOH2VHz 8Sm325J4++V88KweHa8GX/DmX1kw8ocWNK+7iBG50aZ/AY6YD37p01hZOzfoPt4RIIWbPdkyyXbnQ d89wDzmS3h8mwx4bcLr+yfO7VQxxBFl51Iqy9ARXA7hPkwI/qE01sZi4Sbf4GlIHe3wvWm/YkdXvs RlyRSWe/tETzNkGy+rJh0a36y6ub4A0xjoNOteiletjlWVdokSWPQiOgRozxe2vvcv/HtcEpZdS8a CCkLck+0FnMm78PaFNehGbLjAOI+lurg==; Received: from doko by paradis.debian.org with local (Exim 4.94.2) (envelope-from <doko@paradis.debian.org>) id 1tk5G5-009Pb4-JH for maintonly@bugs.debian.org; Mon, 17 Feb 2025 17:50:17 +0000 To: maintonly@bugs.debian.org Subject: relion: ftbfs with GCC-15 From: Matthias Klose <doko@debian.org> MIME-Version: 1.0 Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: 8bit Message-Id: <E1tk5G5-009Pb4-JH@paradis.debian.org> Date: Mon, 17 Feb 2025 17:50:17 +0000 Delivered-To: maintonly@bugs.debian.org Package: src:relion Version: 3.1.3-4 Severity: important Tags: sid forky User: debian-gcc@lists.debian.org Usertags: ftbfs-gcc-15 [This bug is NOT targeted to the upcoming trixie release] Please keep this issue open in the bug tracker for the package it was filed for. If a fix in another package is required, please file a bug for the other package (or clone), and add a block in this package. Please keep the issue open until the package can be built in a follow-up test rebuild. The package fails to build in a test rebuild on at least amd64 with gcc-15/g++-15, but succeeds to build with gcc-14/g++-14. The severity of this report will be raised before the forky release. The full build log can be found at: http://qa-logs.debian.net/2025/02/16/amd64exp/relion_3.1.3-4_unstable_gccexp.log.gz The last lines of the build log are at the end of this report. To build with GCC 15, either set CC=gcc-15 CXX=g++-15 explicitly, or install the gcc, g++, gfortran, ... packages from experimental. apt-get -t=experimental install g++ GCC 15 now defaults to the C23/C++23 standards, exposing many FTBFS. Other Common build failures are new warnings resulting in build failures with -Werror turned on, or new/dropped symbols in Debian symbols files. For other C/C++ related build failures see the porting guide at http://gcc.gnu.org/gcc-15/porting_to.html [...] from /build/reproducible-path/relion-3.1.3/src/jaz/tomo/backprojection_helper.h:24, from /build/reproducible-path/relion-3.1.3/src/jaz/tomo/backprojection_helper.cpp:23: /build/reproducible-path/relion-3.1.3/src/rwTIFF.h: In member function ‘int Image<T>::readTIFF(TIFF*, long int, bool, bool, const FileName&)’: /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:43:16: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 43 | uint32 width, length; // apparent dimensions in the file | ^~~~~ In file included from /usr/include/x86_64-linux-gnu/tiffio.h:31, from /build/reproducible-path/relion-3.1.3/src/image.h:57: /usr/include/x86_64-linux-gnu/tiff.h:86:38: note: declared here 86 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:43:23: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 43 | uint32 width, length; // apparent dimensions in the file | ^~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:86:38: note: declared here 86 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:44:16: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 44 | uint16 sampleFormat, bitsPerSample, resolutionUnit; | ^~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:44:30: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 44 | uint16 sampleFormat, bitsPerSample, resolutionUnit; | ^~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:44:45: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 44 | uint16 sampleFormat, bitsPerSample, resolutionUnit; | ^~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:185:32: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 185 | uint32 cur_width, cur_length; | ^~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:86:38: note: declared here 86 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:185:43: warning: ‘uint32’ is deprecated [-Wdeprecated-declarations] 185 | uint32 cur_width, cur_length; | ^~~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:86:38: note: declared here 86 | typedef TIFF_MSC_DEPRECATED uint32_t uint32 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:186:32: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 186 | uint16 cur_sampleFormat, cur_bitsPerSample; | ^~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ /build/reproducible-path/relion-3.1.3/src/rwTIFF.h:186:50: warning: ‘uint16’ is deprecated [-Wdeprecated-declarations] 186 | uint16 cur_sampleFormat, cur_bitsPerSample; | ^~~~~~~~~~~~~~~~~ /usr/include/x86_64-linux-gnu/tiff.h:83:38: note: declared here 83 | typedef TIFF_MSC_DEPRECATED uint16_t uint16 TIFF_GCC_DEPRECATED; | ^~~~~~ make[4]: *** [src/apps/CMakeFiles/relion_lib.dir/build.make:1790: src/apps/CMakeFiles/relion_lib.dir/__/jaz/img_proc/filter_helper.cpp.o] Error 1 make[4]: *** Waiting for unfinished jobs.... make[4]: Leaving directory '/build/reproducible-path/relion-3.1.3/build' make[3]: *** [CMakeFiles/Makefile2:321: src/apps/CMakeFiles/relion_lib.dir/all] Error 2 make[3]: Leaving directory '/build/reproducible-path/relion-3.1.3/build' make[2]: *** [Makefile:139: all] Error 2 make[2]: Leaving directory '/build/reproducible-path/relion-3.1.3/build' make[1]: *** [debian/rules:41: override_dh_auto_build] Error 2 make[1]: Leaving directory '/build/reproducible-path/relion-3.1.3' make: *** [debian/rules:33: binary] Error 2 dpkg-buildpackage: error: debian/rules binary subprocess returned exit status 2 ]