[From nobody Tue Oct 20 13:51:04 2026 Received: (at submit) by bugs.debian.org; 5 Dec 2024 20:11:06 +0000 X-Spam-Checker-Version: SpamAssassin 3.4.6-bugs.debian.org_2005_01_02 (2021-04-09) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-113.2 required=4.0 tests=BAYES_00,DKIMWL_WL_HIGH, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER, PGPSIGNATURE,SPF_HELO_NONE,SPF_NONE,UNPARSEABLE_RELAY, USER_IN_DKIM_WELCOMELIST,USER_IN_DKIM_WHITELIST autolearn=ham autolearn_force=no version=3.4.6-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 24; hammy, 150; neutral, 142; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <emollier@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:42262) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=stravinsky.debian.org, EMAIL=hostmaster@stravinsky.debian.org (verified) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <emollier@debian.org>) id 1tJIBm-00Fs6o-JL for submit@bugs.debian.org; Thu, 05 Dec 2024 20:11:06 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Content-Type:MIME-Version:Message-ID: Subject:To:From:Date:Reply-To:Cc:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=1xW7SUZyhUiYd6K3VxL7IxqubZn0J97ys63c06TNihA=; b=h1rEZ1EyIIQvrzr6S6SUe6Uot4 svxLze8kDygqCDz15ktaIEUIzwM6+3zU1SJO40PR/kjsuJcOR69vNgKgBaUNDJTFwIheyxzBLX2es sVBtXxEDdi9HnU16/XXoRL++z6lbi5xEfNdyBETwOlIha059XOfL3v4YfLjcRyryaUdR59CwJUkb3 gxqaaSJEQkcJ/zc38P7/7jIdxBkx2zKnQIOu+3RnAm+6SjmTrQv7bP2OvVJWH/GFT308Uidchlx+O jhWiYqd16YOcCk+JUfkjQbtVA+1k1eyoeJzrmbhGUBoIDjx0Cltum09Zu8I262sslwVLOg2T3WXdd wwUNvPFw==; Received: from authenticated user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <emollier@debian.org>) id 1tJIBk-002xJh-Gg; Thu, 05 Dec 2024 20:11:04 +0000 Date: Thu, 5 Dec 2024 21:11:02 +0100 From: =?utf-8?Q?=C3=89tienne?= Mollier <emollier@debian.org> To: Debian Bug Tracking System <submit@bugs.debian.org> Subject: umis: tracebacks normally fatal during autopkgtest runs Message-ID: <Z1II1g2imMG3XIJY@emlwks999.eu> MIME-Version: 1.0 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="ycvTl7i8EfaRMrhd" Content-Disposition: inline X-Reportbug-Version: 13.0.2 X-Debian-User: emollier Delivered-To: submit@bugs.debian.org --ycvTl7i8EfaRMrhd Content-Type: text/plain; charset=utf-8 Content-Disposition: inline Content-Transfer-Encoding: quoted-printable Source: umis Version: 1.0.9-1 Severity: serious Justification: superficial-autopkgtest Hi, While looking at umis to tackle Python SyntaxWarnings, I ended up realizing that it is affected by a couple of tracebacks which should normally be fatal: Traceback (most recent call last): File "/usr/bin/umis", line 33, in <module> sys.exit(load_entry_point('umis=3D=3D1.0.9', 'console_scripts', 'umis'= )()) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1157, in __cal= l__ return self.main(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1078, in main rv =3D self.invoke(ctx) ^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1434, in invoke return ctx.invoke(self.callback, **ctx.params) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 783, in invoke return __callback(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/umis/umis.py", line 299, in fastqtr= ansform read1_dict['MB'] =3D read1_dict['MB1'] + read1_dict['MB2'] ~~~~~~~~~~^^^^^^^ KeyError: 'MB1' and: Traceback (most recent call last): File "/usr/bin/umis", line 33, in <module> sys.exit(load_entry_point('umis=3D=3D1.0.9', 'console_scripts', 'umis'= )()) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1157, in __cal= l__ return self.main(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1078, in main rv =3D self.invoke(ctx) ^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 1434, in invoke return ctx.invoke(self.callback, **ctx.params) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/click/core.py", line 783, in invoke return __callback(*args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/umis/umis.py", line 502, in tagcount cb_hist =3D pd.read_csv(cb_histogram, index_col=3D0, header=3DNone, sq= ueeze=3DTrue, sep=3D"\t") ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^= ^^^^^^^^^^^^^^^ TypeError: read_csv() got an unexpected keyword argument 'squeeze' autopkgtest is currently passing though, because due to missing option -e, the test unfolds despite errors, and a scripting bug in the data consistency check at the end of the script gets it to be routed straight through the "Tests passed" code path: test.sh: 198: [: Files: unexpected operator Tests passed. autopkgtest [20:07:46]: test run-unit-test: -----------------------] I may have a closer look at this in the upcoming weekend, but if not, at least let's leave a target open for the ongoing Advent Calendar Bug Squashing Party. ;) Have a nice day, :) --=20 .''`. =C3=89tienne Mollier <emollier@debian.org> : :' : pgp: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da `. `' sent from /dev/pts/2, please excuse my verbosity `- on air: Cloverseeds - Avalon --ycvTl7i8EfaRMrhd Content-Type: application/pgp-signature; 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