[From nobody Tue Oct 20 19:51:05 2026 Received: (at 1118526-close) by bugs.debian.org; 20 Oct 2026 18:49:37 +0000 X-Spam-Checker-Version: SpamAssassin 4.0.1-bugs.debian.org_2005_01_02 (2024-03-25) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-111.0 required=4.0 tests=BAYES_00,DKIM_SIGNED, DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FOURLA,FVGT_m_MULTI_ODD, HAS_BUG_NUMBER,MD5_SHA1_SUM,MEDS2,PGPSIGNATURE,RCVD_IN_DNSWL_MED, SPF_HELO_PASS,SPF_PASS,USER_IN_DKIM_WELCOMELIST autolearn=ham autolearn_force=no version=4.0.1-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 94; hammy, 150; neutral, 172; spammy, 0. spammytokens: hammytokens:0.000-+--HX-Debian:DAK, 0.000-+--H*rp:D*ftp-master.debian.org, 0.000-+--HX-DAK:process-upload, 0.000-+--UD:debian.tar.xz, 0.000-+--H*r:sk:fasolo. Return-path: <envelope@ftp-master.debian.org> Received: from mitropoulos.debian.org ([2001:648:2ffc:deb:216:61ff:fe9d:958d]:53188) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <envelope@ftp-master.debian.org>) id 1xJEu1-004Lwq-33 for 1118526-close@bugs.debian.org; Tue, 20 Oct 2026 18:49:37 +0000 Received: via submission from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=fasolo.debian.org, EMAIL=hostmaster@fasolo.debian.org (verified) by mitropoulos.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.96) (envelope-from <envelope@ftp-master.debian.org>) id 1xJEtz-001RNy-1O for 1118526-close@bugs.debian.org; Tue, 20 Oct 2026 18:49:35 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=ftp-master.debian.org; s=smtpauto.fasolo; h=Date:Message-Id:Content-Type: Subject:MIME-Version:To:Reply-To:From:Cc:Content-Transfer-Encoding:Content-ID :Content-Description:In-Reply-To:References; bh=ToCg6eP8OYgj71bj/RnB+DqJG+cJNqbaIp0YtF0IwSk=; b=YF+33BNGw2v6PNOqaxmGLqwmxR P1fTHWchldMLG+YXaA7yYL8flCwhxfpd52Qj3NUgk2B4iToD7mZ45nXnBUrVqvKOQ5JecOw8yaNPm CPmbTW5ioMNHiUTkJ8DZj0qOfaMVSPA3CTr9606OZQ4U2UqdHbOOaoweBVLYMy5fO1sY8Z+neh/+E wCB6fXSjdA5gA+ea27S2DDv5IJQ82sUZ3MGYLc9j05TsLRLR6S5jHT0JCvh8dxUsH0vXk5cawMgvH JOLd8+VRA/yYz7CzhVNhVoTt/7ODsN/KKf7bTqBYZ01zcrY6CR0wUGkp8Q30cqUOsqpit51+oouGi 5xA9swqA==; Received: from dak by fasolo.debian.org with local (Exim 4.98.2) (envelope-from <envelope@ftp-master.debian.org>) id 1xJEty-00000007hQQ-126V; Tue, 20 Oct 2026 18:49:34 +0000 From: Debian FTP Masters <ftpmaster@ftp-master.debian.org> Reply-To: Andreas Tille <tille@debian.org> To: 1118526-close@bugs.debian.org X-DAK: dak process-upload X-Debian: DAK X-Debian-Package: kallisto Debian: DAK Debian-Changes: kallisto_0.52.0+dfsg-1_source.changes Debian-Source: kallisto Debian-Version: 0.52.0+dfsg-1 Debian-Architecture: source Debian-Suite: unstable Debian-Archive-Action: accept MIME-Version: 1.0 Subject: Bug#1118526: fixed in kallisto 0.52.0+dfsg-1 Content-Type: multipart/signed; micalg="pgp-sha256"; protocol="application/pgp-signature"; boundary="===============1920919977783470952==" Message-Id: <E1xJEty-00000007hQQ-126V@fasolo.debian.org> Date: Tue, 20 Oct 2026 18:49:34 +0000 --===============1920919977783470952== Content-Type: text/plain; charset="utf-8" Content-Transfer-Encoding: quoted-printable Source: kallisto Source-Version: 0.52.0+dfsg-1 Done: Andreas Tille <tille@debian.org> We believe that the bug you reported is fixed in the latest version of kallisto, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 1118526@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Andreas Tille <tille@debian.org> (supplier of updated kallisto package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Tue, 20 Oct 2026 19:44:13 +0200 Source: kallisto Architecture: source Version: 0.52.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debi= an.org> Changed-By: Andreas Tille <tille@debian.org> Closes: 1118526 Changes: kallisto (0.52.0+dfsg-1) unstable; urgency=3Dmedium . * New upstream version * Adapt patches to new upstream version * Build the bundled bifrost with the same MAX_KMER_SIZE as kallisto instead of compiling it with MAX_KMER_SIZE=3D31. The mismatched k-mer size caus= ed heap corruption and test failures. Closes: #1118526 * Drop 'Rules-Requires-Root: no' from d/control (routine-update) * Reformat the Last-Update date as ISO YYYY-MM-DD. * Remove unused patch to use Debian packaged bifrost Checksums-Sha1: 489575a4aef3fbf6482cbf9efffd378b7461860c 2181 kallisto_0.52.0+dfsg-1.dsc 629e2a15bdfb9eca2b69f6d22077f16d3cc11c5c 3469176 kallisto_0.52.0+dfsg.orig.t= ar.xz c2b2f47c5aade22a8051d50ec642feff1b9e1d21 8908 kallisto_0.52.0+dfsg-1.debian.= tar.xz 886ccd6176b260b9c139ca80df1e26f549c241d5 11731 kallisto_0.52.0+dfsg-1_amd64.= buildinfo Checksums-Sha256: 8be38f258c0aa40bf40199ced7aa50c19fc007f0b44d77900b363233a3e411bd 2181 kallis= to_0.52.0+dfsg-1.dsc ca13d7265a0bcf23c0035a8b2d25e88be4231f253fd1685f800d8ed5a802a757 3469176 kal= listo_0.52.0+dfsg.orig.tar.xz db373cdd908b2070061b5783fa27d395def0190931bfef505b0564b7a8a58093 8908 kallis= to_0.52.0+dfsg-1.debian.tar.xz d326e8ce35e47b918fafcd8d49de782a44269b2385f4cac9e4397502795457db 11731 kalli= sto_0.52.0+dfsg-1_amd64.buildinfo Files: 27b218b55750a6985fb3984ef4747e11 2181 science optional kallisto_0.52.0+dfsg-= 1.dsc 1e6e5931da0ede9a1763868f07ceeece 3469176 science optional kallisto_0.52.0+df= sg.orig.tar.xz efa1ec2329e87eda74fcf83b0dc819cc 8908 science optional kallisto_0.52.0+dfsg-= 1.debian.tar.xz 8c0e933bff9347de80b8b8888c84393d 11731 science optional kallisto_0.52.0+dfsg= -1_amd64.buildinfo -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmrXsaoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEhjA/+L6TMNFI2l104CcxfoSvYWsDovRScwn/Y V4AlSkdJrf2mLCrVDTGMry1SRYkPdwKEwd1hG1cPA072O02PJoB1jewkJ1j36L3Z RpJ8/UUXN95l1J1/B71jk40pr+7Rf+njcBh5k8v6pYOILZBqIiwcPDfRb2W7pgko LYO+0VFq+z5MEKKAR68wByWLz5zSeyEErjvqgAfjVH3pGtDEcu8VXyH7+zG1yaCN gc4+I4cv2vMwV3fO5bhqcMGqI++0qXniii98TeYT2iaf/Z+gYaWowWB2PI3qMfJc QjJgPvFo9ypnyyoLkuc10fzatP0Opt25vAf37pNkf9klO8D0gs+TOiBqmHn//YNW pvt3imtwA4WMUGggfEpa46OA/G1rWSio6zqlD6YaISLoGbIRI1Ut8Lj3Tmwa9RhO lu1jc4y2QCEMV2hNgXwIuse3fkuM3R5H//xalNXFccL5sbuYYD2MYVOd4lSc+8Md r8Bqzcfpx7kH1dU28xqDTFV+6cg7J0znUTnqMTvJ0OsM/9UyvPHsIW1DCEj+8/PY qQGbMEYyoWR/PXsB3NrPARBc5PSJEKl0xs2Z7vedU17pxdnRxz/GQuGJPYKnwOzv /b/P185NizJxq/JkFinot0TzRBxSLTkzuZ5mMaaxG0yMK5ira5N8/m5UFED7PSBw TejvxIfkkAY=3D =3DEM/w -----END PGP SIGNATURE----- --===============1920919977783470952== Content-Type: application/pgp-signature -----BEGIN PGP SIGNATURE----- iHUEABYIAB0WIQTziqJOuF8J+ZI8pJSb9qggYcy5IQUCate3vgAKCRCb9qggYcy5 IcpbAQCLUcWnV2akOxxsKPffuYgQ+ISicAVik94KkwVpF1UmlwD+PL6K3aX3G9Tc 4UwtZUSmDYkSPILsYMWv0Ygq+/nyOgI= =9OAv -----END PGP SIGNATURE----- --===============1920919977783470952==-- ]