[From nobody Fri Oct 23 20:23:08 2026 Received: (at submit) by bugs.debian.org; 23 Oct 2024 11:35:47 +0000 X-Spam-Checker-Version: SpamAssassin 3.4.6-bugs.debian.org_2005_01_02 (2021-04-09) on buxtehude.debian.org X-Spam-Level: X-Spam-Status: No, score=-105.5 required=4.0 tests=BAYES_00,DKIMWL_WL_HIGH, DKIM_SIGNED,DKIM_VALID,DKIM_VALID_AU,DKIM_VALID_EF,FROMDEVELOPER, SPF_HELO_NONE,SPF_NONE,UNPARSEABLE_RELAY,USER_IN_DKIM_WELCOMELIST, USER_IN_DKIM_WHITELIST autolearn=ham autolearn_force=no version=3.4.6-bugs.debian.org_2005_01_02 X-Spam-Bayes: score:0.0000 Tokens: new, 102; hammy, 150; neutral, 37; spammy, 0. spammytokens: hammytokens:0.000-+--Hx-spam-relays-external:sk:stravin, 0.000-+--H*RT:sk:stravin, 0.000-+--Hx-spam-relays-external:311, 0.000-+--H*RT:311, 0.000-+--H*RT:108 Return-path: <ginggs@debian.org> Received: from stravinsky.debian.org ([2001:41b8:202:deb::311:108]:44420) from C=NA, ST=NA, L=Ankh Morpork, O=Debian SMTP, OU=Debian SMTP CA, CN=stravinsky.debian.org, EMAIL=hostmaster@stravinsky.debian.org (verified) by buxtehude.debian.org with esmtps (TLS1.3:ECDHE_SECP256R1__RSA_PSS_RSAE_SHA256__AES_256_GCM:256) (Exim 4.94.2) (envelope-from <ginggs@debian.org>) id 1t3ZeV-00EpGD-EP for submit@bugs.debian.org; Wed, 23 Oct 2024 11:35:47 +0000 DKIM-Signature: v=1; a=rsa-sha256; q=dns/txt; c=relaxed/relaxed; d=debian.org; s=smtpauto.stravinsky; h=X-Debian-User:Content-Type:To:Subject:Message-ID: Date:From:MIME-Version:Reply-To:Cc:Content-Transfer-Encoding:Content-ID: Content-Description:In-Reply-To:References; bh=f461c9btqMZEcv4RhvhRQIxlJiRKBB6b7dxvTgUxUzo=; b=cLfqDOwZFRnx3Zw7X1R8eFDS2V TVC4fIxGkOQBKMr0DAhuuw6a2gXRcVkC3H2p7n+2j627NOUf5KzRrC+csua66jQjOSvY/K2ArDPWo vvAw6jKd7Z3QLm97MZ2cqHPkQ1PtWdbT7V42nFa2gFVbYUcPvcgG4qbTZo2kc1RDVmVrES8DrVtZE ir4spVrEoMw+diTcePXw1oq8Qf1wH84uYGtnsrQrIAbtqrtJeRkNoqEa3NsiRE25jkzN9pHXp3uTs QOJyKkeUx2kovUvcwBgAHOf7D0d/WT5HplkU4zz7x/+b1oHubhG7Q0DwJmvOE4KlHUjEpk4bsCeQj GA9kzMAg==; Received: from authenticated user by stravinsky.debian.org with esmtpsa (TLS1.3:ECDHE_X25519__RSA_PSS_RSAE_SHA256__AES_128_GCM:128) (Exim 4.94.2) (envelope-from <ginggs@debian.org>) id 1t3ZeT-002Sae-Gs for submit@bugs.debian.org; Wed, 23 Oct 2024 11:35:45 +0000 Received: by mail-oo1-f49.google.com with SMTP id 006d021491bc7-5eb60cc6da6so73301eaf.3 for <submit@bugs.debian.org>; Wed, 23 Oct 2024 04:35:45 -0700 (PDT) X-Gm-Message-State: AOJu0Yw6vTkbH8T3moAcC8girZnp/pvo9pRc+M7d606vSlsDU/YcQrwG E6EM7pLD5xOSM7AqzxGKk0vkOJX7kyD3O0rk4udy11/YbaGHP5Fyqu/ZsA6pdEIcji5i95qhO9C 3LpgcSfdvQIs1dOY+dhWviSV74lM= X-Google-Smtp-Source: AGHT+IHZJAFTF59e5ypp7wvdyjY5nTS4k9OJONriOSCM90+PYTGTTyIm4lt9zyDwPjvvpj9zjFFG/hgA4SBT0SY3i0o= X-Received: by 2002:a05:6820:26c3:b0:5eb:5241:210c with SMTP id 006d021491bc7-5ebee2f907fmr233491eaf.0.1729683343910; Wed, 23 Oct 2024 04:35:43 -0700 (PDT) MIME-Version: 1.0 From: Graham Inggs <ginggs@debian.org> Date: Wed, 23 Oct 2024 11:35:32 +0000 X-Gmail-Original-Message-ID: <CAM8zJQv1A+__14Or24qOBf2JepRBvLi=2w5RE-KUsom-fdL=kA@mail.gmail.com> Message-ID: <CAM8zJQv1A+__14Or24qOBf2JepRBvLi=2w5RE-KUsom-fdL=kA@mail.gmail.com> Subject: python-csb: Python SyntaxWarning To: Debian Bug Tracking System <submit@bugs.debian.org> Content-Type: text/plain; charset="UTF-8" X-Debian-User: ginggs Delivered-To: submit@bugs.debian.org Source: python-csb Version: 1.2.5+dfsg-10 User: debian-python@lists.debian.org Usertags: syntaxwarning Hi Maintainer The SyntaxWarning below were emitted when this package was tested with pipuarts[1]. Regards Graham [1] https://piuparts.debian.org/sid/source/p/python-csb.html Setting up python3-csb (1.2.5+dfsg-10) ... /usr/lib/python3/dist-packages/csb/bio/io/hhpred.py:210: SyntaxWarning: invalid escape sequence '\d' m = re.search('(\d+)\D+(\d+)', line).groups() /usr/lib/python3/dist-packages/csb/bio/io/hhpred.py:260: SyntaxWarning: invalid escape sequence '\s' seq = re.sub('\s+', '', ''.join(lines[1:])) /usr/lib/python3/dist-packages/csb/bio/io/hhpred.py:307: SyntaxWarning: invalid escape sequence '\-' pattern = re.compile('^[A-Z\-]\s[0-9]+\s+') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:31: SyntaxWarning: invalid escape sequence '\s' input_file_name = re.compile('>>>-----.*?\n.*?\n\s*\|\s*(\S+)\s+') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:32: SyntaxWarning: invalid escape sequence '\d' residues = re.compile('(\d+)\s*residues\s\|') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:33: SyntaxWarning: invalid escape sequence '\s' ramachandran_plot = re.compile('Ramachandran\splot:\s*(\d+\.\d+)' + /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:34: SyntaxWarning: invalid escape sequence '\s' '%\s*core\s*(\d+\.\d+)%\s*allow\s*(\d+\.\d+)' + /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:35: SyntaxWarning: invalid escape sequence '\s' '%\s*gener\s*(\d+\.\d+)%\s*disall') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:36: SyntaxWarning: invalid escape sequence '\s' labelled_all = re.compile('Ramachandrans:\s*(\d+)\s*.*?out\sof\s*(\d+)') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:37: SyntaxWarning: invalid escape sequence '\s' labelled_chi = re.compile('Chi1-chi2\splots:\s*(\d+)\s*.*?out\sof\s*(\d+)') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:38: SyntaxWarning: invalid escape sequence '\s' bad_contacts = re.compile('Bad\scontacts:\s*(\d+)') /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:39: SyntaxWarning: invalid escape sequence '\s' g_factors = re.compile('G-factors\s*Dihedrals:\s*([0-9-+.]+)' + /usr/lib/python3/dist-packages/csb/bio/io/procheck.py:40: SyntaxWarning: invalid escape sequence '\s' '\s*Covalent:\s*([0-9-+.]+)\s*Overall:\s*([0-9-+.]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:32: SyntaxWarning: invalid escape sequence '\s' re_ramachandran = re.compile('Ramachandran\s*Z-score\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:33: SyntaxWarning: invalid escape sequence '\s' re_1st = re.compile('1st\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:34: SyntaxWarning: invalid escape sequence '\s' re_2nd = re.compile('2nd\s*generation\s*packing\s*quality\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:35: SyntaxWarning: invalid escape sequence '\s' re_backbone = re.compile('Backbone\s*conformation\s*Z-score\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/whatif.py:36: SyntaxWarning: invalid escape sequence '\S' re_rotamer = re.compile('chi-1\S*chi-2\s*rotamer\s*normality\s*:\s*([0-9.Ee-]+)') /usr/lib/python3/dist-packages/csb/bio/io/wwpdb.py:1222: SyntaxWarning: invalid escape sequence '\d' res = re.search("(\d+(?:\.\d+)?)\s+ANGSTROM", line) /usr/lib/python3/dist-packages/csb/bio/sequence/__init__.py:566: SyntaxWarning: invalid escape sequence '\w' self._residues += re.sub('([^\w\-\.])+', '', string) /usr/lib/python3/dist-packages/csb/bio/structure/__init__.py:2129: SyntaxWarning: invalid escape sequence '\s' string = ''.join(re.split('\s+', string)) /usr/lib/python3/dist-packages/csb/bio/structure/__init__.py:2131: SyntaxWarning: invalid escape sequence '\s' conf_string = ''.join(re.split('\s+', conf_string)) /usr/lib/python3/dist-packages/csb/statistics/__init__.py:341: SyntaxWarning: invalid escape sequence '\s' """ /usr/lib/python3/dist-packages/csb/test/cases/io/__init__.py:482: SyntaxWarning: invalid escape sequence '\w' "([0-9a-zA-Z]([-.\w]*[0-9a-zA-Z])"] ]